BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18485.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929729 jgi|Araly1|929729|scaffold_302186.1 357 1e-97
> Ahg929729 jgi|Araly1|929729|scaffold_302186.1
Length=304
Score = 357 bits (193), Expect = 1e-97
Identities = 241/264 (91%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 886 TGTATTGCTGATAAGCGTGCAACCTATGAGTTCGGTTACCAGCTCAAAAGCACAGTTCGC 945
||||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1 TGTATCGCCGATAAGCGTGCAACCTATGAGTTCAGTTACCAGCTCAAAAGCACAGCTCGC 60
Query 946 AACCTCCCTCCCCTTGCGGAAGCACTTGCCGCCTTCTCTCAGACATATATCAGGATGTTT 1005
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 AACCTCCCTCCCTTTGCGGAAGCTGTTGCCGCCTTCTCTCAGACACATATCAGGATGTTT 120
Query 1006 CCTAACCAT-CCCTTCTTCGGGACGTTTGGGTCGAAAACTCTTGATCATGGCCCGTTCTG 1064
||||||||| ||||| ||||| ||| |||| |||||||||||||||||||||| ||||||
Sbjct 121 CCTAACCATCCCCTTTTTCGGTACGGTTGGATCGAAAACTCTTGATCATGGCCTGTTCTG 180
Query 1065 GAAAATAAGGCCTATTGGCTCCAGCCTTACC-GATAACAGCTCCTACCTCACTATCCCAT 1123
||||||||||||| |||||||| ||||| || ||||| ||| | ||||| || |||||||
Sbjct 181 GAAAATAAGGCCTCTTGGCTCCGGCCTT-CCTGATAAAAGCGCTTACCTTACCATCCCAT 239
Query 1124 CGATTGTCAAGCAAGCATTCAAAG 1147
||||||||||||||||||||||||
Sbjct 240 CGATTGTCAAGCAAGCATTCAAAG 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5