BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18490.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479351 jgi|Araly1|479351|fgenesh2_kg.3__2052__AT3G18490.1 2700 0.0
> Ahg479351 jgi|Araly1|479351|fgenesh2_kg.3__2052__AT3G18490.1
Length=1898
Score = 2700 bits (1462), Expect = 0.0
Identities = 1769/1913 (92%), Gaps = 37/1913 (2%)
Strand=Plus/Plus
Query 1 TTTCTCTCTATAAATTAAAAACATTACTTACTCTTTCTCTCTTCCACTTAACTCATATCA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TTTCTCTCTATAAATTAAAAACATTACTTACTCTTTTTCTCTTCCACTTAACTCATATCA 60
Query 61 ACCTTCGCCGGAAATAATGGCTTTCCCGCGATTTCTTTCTCTCCTCGCCGTCGTCACTCT 120
||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 61 ACCTTCGCCGGAAATAATGGCTTTCCCGCGATTACTTTCTCTCCTCACCACCGTCACTCT 120
Query 121 CTCTCTTTTCCTCACCACCACTGATGCTTCCTCTCGCTCTCTATCCACTCCACCTAAAAC 180
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 121 CTCTCTTTTCCTCACCACCACTGATGCTTCCTCTCGCTCTCTATCTACTTCACCTAAAAC 180
Query 181 GAAC-GTACTCGACGTCGTTTCATCTCTCCAGCAAACACAAACTATCCTCTCACTCGACC 239
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 G-ACAGTACTCGACGTCGTTTCATCTCTCCAGCAAACACAAACTATCCTCTCACTCGACC 239
Query 240 CGACTCGTTCCTCACTCACCACCACCAAACCCGAATCCCTATCCGACCCGGTTTTCTTCA 299
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 240 CGACTCGTTCCTCACTCACCACTACCAAACCCGAATCCATATCCGACCCGGTTTTCTTCA 299
Query 300 ATTCATCTTCACCACTATCTCTAGAGCTTCACTCTCGAGACACTTTCGTCGCGTCACAGC 359
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTCACCTTCGCCACTATCTCTAGAGCTTCACTCTCGAGACACTTTCGTCGCGTCACAGC 359
Query 360 ACAAAGACTACAAAAGCTTAACACTCAGTCGACTCGAGCGCGACTCATCCCGAGTCGCCG 419
||||||||||||||||| || ||| |||||||||||||| |||||||||||||||||||
Sbjct 360 ACAAAGACTACAAAAGCCTAGTACTGAGTCGACTCGAGCGTGACTCATCCCGAGTCGCCG 419
Query 420 GAATCGTCGCGAAGATCCGTTTCGCCGTCGAAGGAGTCGATAGATCCGATCTCAAACCCG 479
|||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 420 GAATCGCCGCGAAGATCCGTTTCGCCGTGGAAGGAATCGATAGATCTGATCTCAAACCCG 479
Query 480 TTTACAACGAAGATACACGATACCAAACCGAGGATCTAACGACACCTGTCGTCTCCGGAG 539
|| ||||||| |||| ||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 480 TTAACAACGAGGATAGTCGATATCAACCCGAGGCTCTAACGACACCTGTCGTCTCCGGAT 539
Query 540 CCTCTCAAGGAAGCGGCGAGTATTTCTCAAGAATCGGTGTCGGAACTCCGGCGAAAGAGA 599
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 TCTCCCAAGGAAGCGGCGAGTATTTCTCAAGAATCGGAGTCGGAACTCCGGCGAAAGAGA 599
Query 600 TGTACTTGGTTCTCGACACCGGAAGCGACGTAAATTGGATCCAGTGTGAACCTTGCGCCG 659
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 600 TGTACTTGGTTCTCGACACCGGAAGCGACGTGAATTGGATCCAGTGTGAACCTTGCTCCG 659
Query 660 ACTGTTACCAACAGTCCGACCCGGTTTTTAACCCGACTTCGTCTTCCACATACAAATCTC 719
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 660 ACTGTTACCAACAATCCGACCCGGTTTTTAACCCGACTTCATCTTCCACATACAAATCAC 719
Query 720 TCACTTGCTCTGCTCCACAGTGCTCTCTTCTCGAAACCTCCGCTTGTCGGTCAAACAAAT 779
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TCACTTGCTCTGCTCCACAGTGCTCTCTTCTCGAAACCTCCGCTTGTCGTTCAAACAAAT 779
Query 780 GTCTCTACCAAGTTAGTTACGGAGACGGATCTTTCACCGTCGGTGAACTCGCTACCGATA 839
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 GTCTCTACCAAGTTAGTTACGGCGACGGATCTTTCACCGTCGGTGAACTCGCTACCGATA 839
Query 840 CGGTGACGTTTGGTAACTCTGGTAAAATAAACAACGTCGCTTTGGGTTGTGGTCACGACA 899
||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 840 CGGTGACGTTTGGAAACTCTGGAAAAATAAACGACGTCGCTTTGGGTTGTGGTCACGATA 899
Query 900 ACGAAGGTCTCTTTACCGGAGCAGCCGGTTTACTCGGTTTAGGCGGTGGTGTTTTATCGA 959
||||||||||||| ||||||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct 900 ACGAAGGTCTCTTCACCGGAGCAGCCGGTATACTCGGTTTAGGTGGTGGAGCTTTATCGA 959
Query 960 TAACCAATCAAATGAAAGCGACGTCGTTTTCTTACTGCCTCGTTGACCGTGACTCGGGAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TAACCAATCAAATGAAAGCGACGTCGTTTTCTTACTGCCTCGTTGACCGTGACTCGGGAA 1019
Query 1020 AGTCCTCAAGTCTTGATTTCAACTCGGTCCAACTCGGTGGCGGAGACGCGACGGCGCCGC 1079
| || || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1020 AATCGTCGAGTCTTGATTTTAACTCGGTCCAACTCGGTAGCGGAGACGCGACGGCGCCGC 1079
Query 1080 TTCTACGTAACAAAAAGATCGACACTTTCTACTACGTCGGACTCAGTGGATTCAGCGTCG 1139
|||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 TTCTCCGTAACCAAAAGATCGACACTTTCTACTACGTCGGACTCAACGGATTCAGCGTCG 1139
Query 1140 GTGGTGAAAAAGTCGTGCTGCCTGATGCGATCTTCGATGTCGATGCTTCGGGAAGCGGAG 1199
||||| |||||||| | |||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 1140 GTGGTCAAAAAGTCATTATGCCTGATGCTATCTTCGACGTCGACGCTTCGGGAAGTGGAG 1199
Query 1200 GAGTGATCTTGGATTGTGGAACCGCCGTGACTCGTCTTCAGACGCAGGCTTATAACTCGC 1259
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1200 GAGTGATCTTGGATTGTGGAACCGCCGTGACTCGTCTTCAAACTCAGGCTTATAACTCGC 1259
Query 1260 TGCGTGACGCGTTTCTTAAACTCACCGTGAATCTCAAAAAAGGATCTTCGAGCATCTCTC 1319
| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1260 TACGTGACGCGTTTCTTAAACTCACCACGAATCTCAAAAAAGGAACTTCGAGCATCTCTC 1319
Query 1320 TGTTCGACACGTGTTACGATTTCTCGTCTCTCTCCACTGTGAAAGTACCGACGGTTGCGT 1379
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1320 TGTTCGACACGTGTTACGATTTCTCGTCTCTCTCCACCGTGAAAGTACCGACGGTTGCGT 1379
Query 1380 TTCATTTCACGGGAGGGAAGTCGCTTGATTTGCCGGCGAAGAATTATCTGATCCCTGTGG 1439
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1380 TTCATTTCACCGGAGGAAAGTCACTTGATTTGCCGGCGAAGAATTATCTGATCCCTGTAG 1439
Query 1440 ATGATAGTGGAACGTTTTGCTTCGCTTTTGCTCCGACGTCGTCGTCGTTGTCGATCATCG 1499
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1440 ATGATAACGGAACGTTCTGCTTCGCATTTGCTCCGACGTCGTCGTCGTTGTCGATCATCG 1499
Query 1500 GGAATGTGCAGCAGCAAGGGACACGTATCACTTACGATCTATCCAAAAATG-TTATCGGA 1558
| ||||||||||||||||||||||||||||||||||||||| | || || | ||||||||
Sbjct 1500 GAAATGTGCAGCAGCAAGGGACACGTATCACTTACGATCTAGCGAATAA-GATTATCGGA 1558
Query 1559 TTGTCAGGGAATAAATGCTAAACATGTCAAAGTAGAAAAATTAATAGTTTTACGGGTA-A 1617
|||||||||||||||||||||| | | |||||||| |||||| ||||||||| | || |
Sbjct 1559 TTGTCAGGGAATAAATGCTAAAGAAGA-AAAGTAGACAAATTATTAGTTTTACAGATATA 1617
Query 1618 TCAGTAAAACTTTTTATGGTACTAGCTAGCTACGGTAACAAGATGAAAA--CAAAA-TCC 1674
||||||||||||||||||| | | ||| | |||||||||| ||||| ||||| ||
Sbjct 1618 TCAGTAAAACTTTTTATGG-A--A-CTA-C---GGTAACAAGAAGAAAAAACAAAAATC- 1668
Query 1675 TT-AAGTGTGAATTTTTCTACCtt-t-tt-tttAATTAATCATAAGTTATTGTCGTCTTT 1730
|| |||||||||||||||| || | || ||||||| ||||||||||||| ||||||||
Sbjct 1669 TTCAAGTGTGAATTTTTCTT--TTATCTTCTTTAATTGATCATAAGTTATTTTCGTCTTT 1726
Query 1731 T-ATCGAATAATAATAGGATTAATTAATT-TTATTATAAAGTTGAAAGTGTTGTTGTCTC 1788
| ||||||||||||||||||| ||||||| |||| ||||| |||||| ||||||||||||
Sbjct 1727 TTATCGAATAATAATAGGATTGATTAATTATTAT-ATAAATTTGAAAATGTTGTTGTCTC 1785
Query 1789 AGCaagaagttttcagt----agt-ga-----agaagaagaagagtcaataaagtaagaa 1838
||||||||||||||||| ||| | |||||||||||||||||||||| |||
Sbjct 1786 AGCAAGAAGTTTTCAGTGTTTAGTAGTTTGTGAGAAGAAGAAGAGTCAATAAAGCCTGAA 1845
Query 1839 gttacaaaaaagaagGGTCTTTTTGTAACAAAAGTTTAGTCTTCAAAGAAACA 1891
||||||| ||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 1846 GTTACAACAAAGAAGGGCCTTTTTGTAACTAAAGAAAAGTCTTCAAAGAAACA 1898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5