BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18500.3
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929731 jgi|Araly1|929731|scaffold_302188.1 1773 0.0
> Ahg929731 jgi|Araly1|929731|scaffold_302188.1
Length=1348
Score = 1773 bits (960), Expect = 0.0
Identities = 1218/1335 (91%), Gaps = 48/1335 (4%)
Strand=Plus/Plus
Query 91 TTGTTCTTGGTCACGGCCAAGCGAAGCTTACCGTATCTTACCCTCCGGTGGTCACCTTTC 150
||||||||||||||||||||||||||||||||||||| | || || | || | |||
Sbjct 46 TTGTTCTTGGTCACGGCCAAGCGAAGCTTACCGTATC--ATCC-CC--T--TC-GC-TTC 96
Query 151 ATCTGGATTCCATCAATGTCCTTTATCGTCTCTATCTTTCCGTTCCTCTTTCGTGTGTTG 210
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 97 GTCTGGATTCCATCAATGTCCTTCATCGTCTCTATCTTTCCGTTCCTCTTTC--GTG-TG 153
Query 211 CTCCTCCTCCACATCTGGACCGTCCGATTCAAATCCCGAATCATCTTCAAATCGCTCTTA 270
| |||||||||||||||||||||||||||||||||||||||
Sbjct 154 ---------------T-----GTCCGATTCAAATCCCGAATCATCTTCAAATCGCTCTTA 193
Query 271 CAGCCGTAGATGGCAGAATCCTCTTCCCCGGCGTCAACATCCCGATCAAATACCGTCTTC 330
||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||| ||
Sbjct 194 CAGCCGTAGATGGCACAATCCCCTTCCCCGGCGTCGACATCCCGATCAAATGCCGTCATC 253
Query 331 TCAGATTGCTCGTGATTGGATCGATTCAGATACAACTCCAGTTTCTCAAGCTTTAGAGAG 390
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 254 TCGGATTGTTCGTGATTGGATCGATTCAGATACAACTCCAGTTTCCCAAGCTTCAGAGAG 313
Query 391 ATTCACTGTAGTGTCGTACAACATATTGGGAGATGGAAATTCATCATATCACAGAGAGTT 450
||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||
Sbjct 314 ATTCACTGTAGTGTCATACAACATACTGGGAGATAGAAATTCATCATATCATAGAGATTT 373
Query 451 GTACTCCAATGTGT-CTGTTCCTTACCTCAAGTGGGGCTACCGCAAAAGGTTGATATGCG 509
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 374 GTACTCCAATGTGTCCT-TTCCTTACCTCAAGTGGGGCTACCGCAAACGGTTGATATGCG 432
Query 510 AAGAACTCATTCGTCTCAATCCAGACATAATCTCTATGCAGGAAGTAGATAAATATTTTG 569
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 433 AAGAACTCATTCGTCTCAATCCAGACATAATCTGTATGCAGGAAGTAGACAAGTATTTTG 492
Query 570 ATCTATTCAGTATGATGGAGAAAGCTGGATATGCTGGCTCCTATAAGCGGCGAACTGGAG 629
|||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ATCTGTTCAGCACGACGGAGAAAGCTGGATATGCTGGCTCCTATAAGCGGCGAACTGGAG 552
Query 630 ATAACGTCGATGGTTGCGCAATGTTTTGGAAGGCTGACAGGTTTGGAGTTTTGGAGAGGG 689
||||| ||||||| ||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 553 ATAACATCGATGGGTGCGCAATGTTTTGGAAGGCTGATAGCTTTCGAGTTTTGGAGAGGG 612
Query 690 AAAACATTGAGTTTAGCCAGTTTGGTATGCGGGATAATGTTGCACAGCTTGCTGTTCTTG 749
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 613 AAAATATTGAGTTTAGCCAGTTTGGTATGCGCGATAATGTTGCGCAGCTTGCTGTTCTTG 672
Query 750 AGCTCCGGAAGTCTAATAAGTCAAGAAAGATACTGCTGGGTAACATTCACGTGCTTTATA 809
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AGCTGCGGAAGTCTAATAAGTCAAGAAAGATACTGCTGGGTAACATTCACGTGCTTTATA 732
Query 810 ATCCAAATCAAGGAGATGTGAAGCTGGGTCAGGTCCGTTCACTCTGCTCAAAGGCTCACT 869
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 733 ATCCAAATAAAGGAGATGTGAAGCTGGGTCAGATCCGTTCACTCTGCTCAAAGGCTCACT 792
Query 870 TGCTCTCTAAGAAATGGGGTGACATTCCCATTGTTCTATGCGGAGATTTCAATAGCACTC 929
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 793 TGCTCTCTAAGAAATGGGGAGACATTCCCATTGTTCTATGCGGGGATTTCAATAGCACTC 852
Query 930 CCAAGAGTCCATTGTACAACTTCTTGGCGTCCTCTGAGCTGAATGTCATGGAACATGACA 989
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 853 CCCAGAGTCCATTGTACAACTTCTTGGCGACCTCTGAGCTGAATGTCATGGAACATGACA 912
Query 990 AAAAAGAGCTGTCCGGCCAGAAAAATTGTCGTCCTACCAAAGTTCTTGAAACTGGTAGCA 1049
||| |||||| || |||||||||||||||| ||| |||||||||||||| ||||| ||||
Sbjct 913 AAAGAGAGCTCTCTGGCCAGAAAAATTGTCATCCAACCAAAGTTCTTGAGACTGGAAGCA 972
Query 1050 AATCCAGTAATACAATAACTTTCAGAAGTTTTTGTAGCTCTTGGACAAAAGAAGAGATCC 1109
|||| |||||||||||||||||||| || || | |||| || ||||||||||
Sbjct 973 AATCTAGTAATACAATAACTTTCAG---TT-------CT-T-GGACCAATGAAGAGATCC 1020
Query 1110 GTGTCGCAACCGGGCAAGAGAACTCGTACTGGGCTGCGCATCCTCT-GAAACTCAATAGC 1168
| || || |||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 1021 GAGTTGCGACCGGGCAAGAGAACTCGTACTGGGCTGTGCATCC-CTTGAAACTCAATAGC 1079
Query 1169 TCATACGCCTCAGTTAAGGGCTCAGCAAATACCAGGGACTCTGTTGGTGAACCTCTAGCA 1228
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1080 TCATACGCCTCAGTTAAGGGCTCACCAAATACCAGGGACTCTATTGGTGAACCTCTAGCA 1139
Query 1229 ACCTCATATCACTCGAAATTTCTCGGAACGGTTGATTATCTCTGGTACTCTGATGGTCTT 1288
||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1140 ACCTCGTATCACTCGAAATTTCTAGGAACTGTTGATTATCTTTGGTACTCTGATGGTCTT 1199
Query 1289 TTACCTGCAAGAGTTCTTGACACACTTCCTATTGATGTTCTATGCAAAACCAAAGGCCTT 1348
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 GTACCTGCAGGAGTTCTTGATACACTTCCTATTGATGTTCTCTGCAAAACCAAAGGCCTT 1259
Query 1349 CCTTGTCAAGAATTGGGAAGCGATCACTTGGCTCTTGTTTCTGAATTTGTCTTTGAACCG 1408
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1260 CCTTGTCAAGAATTGGGAAGCGATCACTTGGCACTTGTTTCTGAGTTTTTCTTTGAACCG 1319
Query 1409 GACGGTTAAAGGCAT 1423
||||||||||||||
Sbjct 1320 AACGGTTAAAGGCAT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5