BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G18510.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479354 jgi|Araly1|479354|fgenesh2_kg.3__2055__AT3G18510.1         568    2e-161


> Ahg479354 jgi|Araly1|479354|fgenesh2_kg.3__2055__AT3G18510.1
Length=404

 Score =  568 bits (307),  Expect = 2e-161
 Identities = 386/421 (92%), Gaps = 18/421 (4%)
 Strand=Plus/Plus

Query  1    AAAGTTGGAATCGAAGGAAGAAGAGACAAGAGAAAGTGAGGAAATTAATGGCGTTGAGCT  60
            ||| ||||||||||||||||| |||| |||||  |||||||  |  ||||||||||||||
Sbjct  1    AAATTTGGAATCGAAGGAAGAGGAGAGAAGAG--AGTGAGG--A--AATGGCGTTGAGCT  54

Query  61   CAATGACATGGGGTTACGCACGGATCATAGCTGGAACACTTCTCGGCGGGG-CCCTCGGA  119
            | ||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct  55   CGATGACATGGGGTTACGCACGGATCATAGCTGGAACACTTCTAGG-GGGGACTCTCGGA  113

Query  120  TTCTACGTAATGCATCGCATCGAAGTTAGCTACAAGATGAGGATGGAGGAAGCGTTGAAT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  TTCTACGTAATGCATCGCATCGAAGTTAGCTACAAGATGAGGATGGAGGAAGCGTTGAAT  173

Query  180  CAATACGAGAAGGATATGCAGAAGAGACAAGAAGAAGAAAATCTTATTCAGATCAATGAA  239
            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  174  CAATACGAGAAGGATATGCAGAAGAGACAAGAAGAAGAGAATCTTAGTCAGATCAATGAA  233

Query  240  GAATCTGTTTAGCTTATTTCTTGGTAGCATGCCTTCAAAGTGTTCGATGAAATGCCCAAC  299
            ||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct  234  GAATCCGTTTAGCTT-TCTCTTGGTACCATGCCTTCAAAGTGTTCGATGAAATGCCCAAC  292

Query  300  AGATGTTTGATGCTGTTTTGACtttttttCTCTCATGTATTTTTCGGTTTGGTTTGGTCT  359
            |||||||| ||| |||||| |||      || |  ||| |||||||||||||||||||||
Sbjct  293  AGATGTTTTATGTTGTTTTTACT------CT-T--TGTGTTTTTCGGTTTGGTTTGGTCT  343

Query  360  GGCATTATGAAAATGTTTCATTTGTCTTTGGTTTAATAACTATATACCATGATGGTGGAC  419
            ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  344  GGCATTATGAAAAGGTTTCATTTGTCTTTGGTTTAAAAACTATATACCATGATGGTGGAC  403

Query  420  C  420
            |
Sbjct  404  C  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5