BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G18518.1

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929733 jgi|Araly1|929733|scaffold_302190.1                        211    1e-54


> Ahg929733 jgi|Araly1|929733|scaffold_302190.1
Length=803

 Score =  211 bits (114),  Expect = 1e-54
 Identities = 132/140 (94%), Gaps = 3/140 (2%)
 Strand=Plus/Plus

Query  1    ATGAGGGAGAAGTACACAAAGGAGGAAGCAGTGAAGAATTGGGAGAAGAAGAAGAACAAG  60
            |||| ||||||||   | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct  28   ATGAAGGAGAAGT---CGAAGGAGGAGGCAGTGAAGAATTGGGACAAGAAGAAGAACAAG  84

Query  61   CCTTCTTCACCAAAAGGAGTTGGAGAGTTTCTGAAAAAGAAGAAAGGAAGGTTCTACATT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   CCTTCTTCACCAAAAGGAGTTGGAGAGTTTCTGAAAAAGAAGAAAGGAAGGTTCTACATT  144

Query  121  ATTGGAAAATGTATTACTAT  140
            ||||| ||||||||||||||
Sbjct  145  ATTGGGAAATGTATTACTAT  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5308168279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5