BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18520.2
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479356 jgi|Araly1|479356|fgenesh2_kg.3__2057__AT3G18520.1 2708 0.0
> Ahg479356 jgi|Araly1|479356|fgenesh2_kg.3__2057__AT3G18520.1
Length=1746
Score = 2708 bits (1466), Expect = 0.0
Identities = 1660/1752 (95%), Gaps = 19/1752 (1%)
Strand=Plus/Plus
Query 132 TTCAGCTGGTTAGTAGTTTTGAGTGACTACTGAGGTAACAATGGTTGTAGAAACTATCGA 191
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| | ||
Sbjct 4 TTCAGCTGGTTAGTAG-TTTCAGTGACTACTGAGGTAA-AATGGTTGTAGAAACTCTTGA 61
Query 192 GAGGTCTTGTGAGGGTTCAAAGAGAAGACATGTGAACGGTGGAGATATCGCTGTTCCTTG 251
|||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 62 GAGGTCCTGTGAGGGTTCAAAGAGAAGACATGTGAATGGTGGTGATGTCGCTGTTCCTTG 121
Query 252 TTCGGGAGAAGAGTGT-AGCAATGGAGATATAAATGTAGCTCCTGGAGTTTCAGCGAAAA 310
||||||||| |||| | ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 122 TTCGGGAGATGAGT-TAAGCAATGGAGATATAAATGCAGCTCCTGGAGTTTCAGCAAAAA 180
Query 311 GAGCTAGGGTTTCTAGAGAAATGACGTTTGAAGATATTTACGGTGCTGATGCATTACTCA 370
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 181 GAGCTAGGGTTTCAAGAGAAATGACGTTTGAAGATATTTACGGTGCTGATGCATTGCTGA 240
Query 371 ATGATGACGATGATGAGGATGATGATTGTGATTGGGAACCTGTGCAGGCGCCTATGGAGT 430
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATGATGATGATGATGAGGAGGATGATTGTGATTGGGAACCTGTGCAGGCGCCTGTGGAGT 300
Query 431 TTGTAAAATGGTGTTGTGTCAATTGCACTATGTCGAACCCTGGTGATATGGTCCACTGTT 490
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGTAAACTGGTGTTGCGTCAATTGCACTATGTCGAACCCTGGTGATATGGTCCACTGTT 360
Query 491 GTATATGCGGTGAGCACAAGGAATCTGGCATTTTGAGGCATGGATATTTAGCGTCTCCCT 550
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 361 ATATATGCGGTGAACACAAGGAATCTGGCATCCTGAGGCATGGATATTTAGCGTCTCCTT 420
Query 551 TTTTTAAAGACACTGGTCTCATTGAAGTCGAGGAGAAATATGGAGGAAGCTCATCTGCAA 610
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 421 TTTTTAAAGACACTGGTCTCATTGAAGTAGAAGAGAAATATGGAGGAAGCTCATCTGCAA 480
Query 611 CCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAATTTGAAGTGA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAATTTGAAGTGA 540
Query 671 AGGCACAACCACATCCAGAGAGACCTGATCGTCTTCGAGCTATAGCTGCTAGTCTTGCCA 730
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGCACATCCACATCCAGAGAGACCTGATCGTCTTCGAGCTATAGCTGCTAGTCTTGCCA 600
Query 731 CAGCTGGTGTTTTTCCTGGAAGATGCTTGCCTATCAATGCAAGGGAAATCACGAAACAAG 790
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 601 CAGCTGGTGTTTTTCCTGGAAGATGCTTGCCTATTAATGCAAGAGAAATCACGAAACAAG 660
Query 791 AACTCCAGATGGTCCACACTTCAGAGCATGTTGATGCTGTTGATACTACAAGCCAGCTTC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACTCCAGATGGTCCACACTTCAGAGCATGTTGATGCTGTTGATACTACAAGCCAGCTTC 720
Query 851 TCTATAGCTACTTCACCTCTGACACATATGCTAATGAGTATTCAGCACGTGCTGCTAGAC 910
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 TCTATAGCTACTTCACCTCTGACACGTATGCTAATGAGTATTCAGCACGTGCTGCTAGAC 780
Query 911 TTGCAGCAGGTTTGTGCGCTGATCTAGCTACAGATATTTTCACTGGCCGTGTAAAAAATG 970
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 781 TTGCAGCAGGTTTGTGCGCTGATCTAGCAACAGAAATTTTCACTGGCCGTGTAAAAAATG 840
Query 971 GTTTTGCTTTGGTTAGACCTCCCGGTCATCATGCTGGCGTCAGGCATGCTATGGGGTTTT 1030
|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 841 GTTTCGCTTTGGTTAGACCTCCGGGTCATCATGCTGGCATCAGGCATGCTATGGGGTTTT 900
Query 1031 GCCTTCACAATAATGCAGCCGTTGCTGCATTAGTAGCACAAGCAGCAGGGGCAAAGAAGG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCCTTCACAATAATGCAGCCGTTGCTGCATTAGTAGCACAAGCAGCAGGGGCAAAGAAGG 960
Query 1091 TGCTGATTGTGGACTGGGATGTCCATCATGGCAACGGAACCCAAGAGATATTCGAACAAA 1150
|||||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||||
Sbjct 961 TGCTGATTTTGGACTGGGATGTACATCATGGAAATGGAACTCAAGAGATATTCGAACAAA 1020
Query 1151 ACAAATCTGTATTGTACATATCCTTGCACAGACATGAGGGAGGAAACTTCTATCCCGGTA 1210
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 ACAAATCTGTATTGTACATATCCTTGCACAGACATGAGGGAGGACACTTCTATCCCGGTA 1080
Query 1211 CTGGAGCTGCTGATGAGGTTGGTTCTAATGGTGGGGAAGGTTATTGTGTAAATGTTCCAT 1270
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 1081 CTGGAGCTGCTGATGAGGTTGGTACAAATGGTGGGGAAGGTTATTGTGTAAATGTTCCTT 1140
Query 1271 GGAGTTGCGGTGGAGTTGGGGATAAAGACTATATCTTTGCGTTTCAACATGTGGTTCTCC 1330
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 GGAGTTGTGGTGGAGTTGGTGATAAAGACTATATCTTTGCGTTTCAACATGTGGTTCTTC 1200
Query 1331 CCATAGCTTCTGCATTTTCTCCAGATTTTGTCATCATATCTGCGGGATTTGATGCGGCTA 1390
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 1201 CCATAGCTTCTGCATTCTCTCCAGATTTTGTCATCGTATCAGCGGGATTTGATGCTGCTA 1260
Query 1391 GAGGAGACCCACTAGGATGCTGTGATGTGACTCCGGCTGGCTATTCTCGAATGACACAGA 1450
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GAGGAGACCCATTAGGATGCTGTGATGTGACTCCGGCTGGCTATTCTCGAATGACACAGA 1320
Query 1451 TGTTGGGTGATCTGTGTGGTGGGAAAATGCTAGTTATTCTCGAGGGCGGCTACAATCTTC 1510
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1321 TGTTGGGTGATCTGTGCGGTGGGAAAATGCTAGTTATTCTGGAAGGCGGCTACAATCTTC 1380
Query 1511 GCTCCATATCTGCTTCTGCAACAGCAGTGATCAAGGTGCTTCTGGGTGAAAATCCGGAGA 1570
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 GCTCCATATCTTCTTCTGCAACAGCAGTGATCAAGGTGCTTCTGGGTGAAATTCCGGAGA 1440
Query 1571 ACGAGTTGCCCATCGCCA-CCACGCCTTCA-GTAGCCGGCCTGCAAACTGTTCTTGATGT 1628
| | |||||||||| | ||||||||||| | || ||||| |||||||||||||||||
Sbjct 1441 ATAACCTGCCCATCGC-AGCCACGCCTTCAAG-AGAAGGCCTACAAACTGTTCTTGATGT 1498
Query 1629 ACTGAATATCCAACTGGAGTTCTGGCCATCACTTGCTATCAGCTACTCCAAATTACTCTC 1688
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACTGAATATTCAAATGAAGTTCTGGCCATCACTTGCTATCAGCTACTCCAAATTACTCTC 1558
Query 1689 AGAGTTGGAAGCACGTCTGATCGAAAACAAAAGTGAAAAATCAGATGAAAAGGAAGGTTG 1748
||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 1559 AGAGTGGGAAGCACGTCTGATCGAAAACAAAA---AAAA-TCAGATGAAAAGGAAGCTTG 1614
Query 1749 TTCGGGTTCCGACATGGTGGAAATGGGGACGAAAGAAGCTTTTGTACAACTTTCTCTCGG 1808
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1615 TTCGGGTTCCGACATGGTGGAAATGGGGACGAAAGAAGCTTTTGTACAAGTTTCTCTCAG 1674
Query 1809 CTCGTATGATTTCAAGATCAAA--G-T----GATTTTAGAAAGCATTCTTCCTAATCCGT 1861
| |||||||||||||||||||| | | ||||||||||||||||||||||||||| |
Sbjct 1675 CGCGTATGATTTCAAGATCAAAATGATTTATGATTTTAGAAAGCATTCTTCCTAATCCAT 1734
Query 1862 CGTAGGAATTGT 1873
|||||||| |||
Sbjct 1735 CGTAGGAACTGT 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5