BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18535.1 Length=1197 Score E Sequences producing significant alignments: (Bits) Value Ahg927619 jgi|Araly1|927619|scaffold_300076.1 1131 0.0 Ahg927618 jgi|Araly1|927618|scaffold_300075.1 270 1e-71 > Ahg927619 jgi|Araly1|927619|scaffold_300076.1 Length=835 Score = 1131 bits (612), Expect = 0.0 Identities = 687/720 (95%), Gaps = 17/720 (2%) Strand=Plus/Plus Query 280 GAA-GGAGTGATG-GATTTGGAACTAGGCGAAGGCGTGATGGAAAAACTCGTGAGCCCTT 337 ||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 GAAGGGAGTTA-GCGATTTGGAACTAGGCGAAGGCGTGATGGAAAAACTCGTGAGCCCTT 129 Query 338 CAGGGGAAGACATGAACTCGCGAGCTCAGC---A----AA--AT--T-GGAAGAATGTAA 385 |||||||||||||||||||||||||||||| | || || | |||||||||||| Sbjct 130 CAGGGGAAGACATGAACTCGCGAGCTCAGCAAAATGTCAAGGATAATCGGAAGAATGTAA 189 Query 386 CTGCTGAAGTGACCAGTAATT-ACTCTCGGATCACCTTTTACTTATTCGCTACCACAGTT 444 || ||| |||||||||| ||| ||||||||||||||||||||| | |||||||| ||||| Sbjct 190 CTACTGGAGTGACCAGT-ATTGACTCTCGGATCACCTTTTACTCAGTCGCTACCTCAGTT 248 Query 445 GTCATCACCATTCTCGTTGGGTCCATCTTTGTTCTATGGTTTGACACCCGCAACGTTGGC 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 GTCATCACCATTCTCGTTGGGTCCATCTTTGTTCTATGGTTTGACACCCGCAACGTTGGC 308 Query 505 ACCTTGCACAAGTTACTGTATGTCTTCTTGTCTGCTGCAACCATTCCATACATTGGTTTG 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 ACCTTGCACAAGTTACTGTATGTCTTCTTGTCTGCTGCAACCATTCCATACATTGGTTTG 368 Query 565 CTATTCATTTGCTTGTGCAACGATGTTCCAGTCCCGAGTTATCGGCTAGGAGCTGAGGGA 624 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 CTATTCATTTGCTTGTGCAACGATGTTCCAGTCCCGAGTTATCGGCTAGGAGCTGAGGGG 428 Query 625 CGGTTTGGGATCTACCTAGCTACAATGGTTGTCATTTATTGCATATCCTACAGCATCGAG 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 CGGTTTGGGATCTACCTAGCTACAATGGTTGTCATTTATTGCATATCCTACAGCATCGAG 488 Query 685 GACTTTGATGTGATGATGGAAGTGTCATTTCTGGTGATTATGTCTATAATAGGAGCGGTT 744 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 489 GACTTTGATGTGATGATGGAAGTGTCATTTCTGGCGATTATGTCTATAACAGGAGCAGTT 548 Query 745 ACAATCGTTCAACTTCATTCTCCTGCCGAGGATTTAAATTCCAGCCGAACCACATTCATA 804 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 549 GCAATCGTTCAACTTCATTCTCCTGCCGAGGATTTAAATTCCAGCCGAACCGCATTCATA 608 Query 805 CTATTTCTAGGGACGATGTCTGCTATTCTGGGTTGTGTAGCGAAGGATTCTTGGATGTCC 864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 CTATTTCTAGGGACGATGTCTGCTATTCTGGGTTGTGTAGCGAAGGATTCTTGGATGTCC 668 Query 865 CTTTCTGGTAGCCTCTGTTTCTTCATGGTTGTCATGTGTATCATCAAAACCAACTGCTTG 924 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 669 CTTTCTGGTAGCCTCTGTTTCTTCATGGTTGTCATGTGTCTCATCAAAATCAACTGCTTG 728 Query 925 GCTGCTGATCATTTTGAAGAAAAACAACGAGAACGCCGTCGCCATCGCCATCGCCTtccc 984 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 729 GCTGCTGATCATTTTGAAGAAAAACAACGAGAACGCCGTCGCCGTCGCCATCGCCATCCC 788 > Ahg927618 jgi|Araly1|927618|scaffold_300075.1 Length=277 Score = 270 bits (146), Expect = 1e-71 Identities = 166/175 (95%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 27 TTCG-CCTTT-TTCTTTCACCGATCTGTGTTGCCGAGTGCCGACTCTCCGTAGTCTTATC 84 |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 277 TTCGCCCTTTCTTCTTTCACCTATCTGTGTTGCCGAGTGCCGACTCTCCGTAGTCTTATC 218 Query 85 TCCGTCGCCGATCTGGATCTCGTCGTCGAATTCGCC-TTAATCCACCGCTGATTCTGAAT 143 |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 217 TCCGTCGCCGATCTGGATCTCGTCGTCGAATTCGCCATTT-TCCACCGCTGATTCCGAAT 159 Query 144 TTTCCGTGTTCTCTCGTCGTCTCTGCCACCGTCACCGTCTCCCGTCGCCGTGTTC 198 |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 158 TTTCTGTGTTCTCTCGTCGTCTCTGCCACCGTCACTGTCTCCCGTCGCCGTGTTC 104 Score = 128 bits (69), Expect = 9e-29 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 188 TCGCCGTGTTCGACCGCTGATTCTGAATTTTCCGTGTTCTCTCGGCGTCTCTGCCACCGT 247 ||||| | ||| ||||||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 186 TCGCCATTTTCCACCGCTGATTCCGAATTTTCTGTGTTCTCTCGTCGTCTCTGCCACCGT 127 Query 248 CACTGTCTCCCGTCGCCGTGTTCCATT 274 ||||||||||||||||||||||||||| Sbjct 126 CACTGTCTCCCGTCGCCGTGTTCCATT 100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44680058724 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5