BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18535.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927619 jgi|Araly1|927619|scaffold_300076.1 1131 0.0
Ahg927618 jgi|Araly1|927618|scaffold_300075.1 270 1e-71
> Ahg927619 jgi|Araly1|927619|scaffold_300076.1
Length=835
Score = 1131 bits (612), Expect = 0.0
Identities = 687/720 (95%), Gaps = 17/720 (2%)
Strand=Plus/Plus
Query 280 GAA-GGAGTGATG-GATTTGGAACTAGGCGAAGGCGTGATGGAAAAACTCGTGAGCCCTT 337
||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GAAGGGAGTTA-GCGATTTGGAACTAGGCGAAGGCGTGATGGAAAAACTCGTGAGCCCTT 129
Query 338 CAGGGGAAGACATGAACTCGCGAGCTCAGC---A----AA--AT--T-GGAAGAATGTAA 385
|||||||||||||||||||||||||||||| | || || | ||||||||||||
Sbjct 130 CAGGGGAAGACATGAACTCGCGAGCTCAGCAAAATGTCAAGGATAATCGGAAGAATGTAA 189
Query 386 CTGCTGAAGTGACCAGTAATT-ACTCTCGGATCACCTTTTACTTATTCGCTACCACAGTT 444
|| ||| |||||||||| ||| ||||||||||||||||||||| | |||||||| |||||
Sbjct 190 CTACTGGAGTGACCAGT-ATTGACTCTCGGATCACCTTTTACTCAGTCGCTACCTCAGTT 248
Query 445 GTCATCACCATTCTCGTTGGGTCCATCTTTGTTCTATGGTTTGACACCCGCAACGTTGGC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GTCATCACCATTCTCGTTGGGTCCATCTTTGTTCTATGGTTTGACACCCGCAACGTTGGC 308
Query 505 ACCTTGCACAAGTTACTGTATGTCTTCTTGTCTGCTGCAACCATTCCATACATTGGTTTG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 ACCTTGCACAAGTTACTGTATGTCTTCTTGTCTGCTGCAACCATTCCATACATTGGTTTG 368
Query 565 CTATTCATTTGCTTGTGCAACGATGTTCCAGTCCCGAGTTATCGGCTAGGAGCTGAGGGA 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTATTCATTTGCTTGTGCAACGATGTTCCAGTCCCGAGTTATCGGCTAGGAGCTGAGGGG 428
Query 625 CGGTTTGGGATCTACCTAGCTACAATGGTTGTCATTTATTGCATATCCTACAGCATCGAG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CGGTTTGGGATCTACCTAGCTACAATGGTTGTCATTTATTGCATATCCTACAGCATCGAG 488
Query 685 GACTTTGATGTGATGATGGAAGTGTCATTTCTGGTGATTATGTCTATAATAGGAGCGGTT 744
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 489 GACTTTGATGTGATGATGGAAGTGTCATTTCTGGCGATTATGTCTATAACAGGAGCAGTT 548
Query 745 ACAATCGTTCAACTTCATTCTCCTGCCGAGGATTTAAATTCCAGCCGAACCACATTCATA 804
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 549 GCAATCGTTCAACTTCATTCTCCTGCCGAGGATTTAAATTCCAGCCGAACCGCATTCATA 608
Query 805 CTATTTCTAGGGACGATGTCTGCTATTCTGGGTTGTGTAGCGAAGGATTCTTGGATGTCC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTATTTCTAGGGACGATGTCTGCTATTCTGGGTTGTGTAGCGAAGGATTCTTGGATGTCC 668
Query 865 CTTTCTGGTAGCCTCTGTTTCTTCATGGTTGTCATGTGTATCATCAAAACCAACTGCTTG 924
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 669 CTTTCTGGTAGCCTCTGTTTCTTCATGGTTGTCATGTGTCTCATCAAAATCAACTGCTTG 728
Query 925 GCTGCTGATCATTTTGAAGAAAAACAACGAGAACGCCGTCGCCATCGCCATCGCCTtccc 984
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 729 GCTGCTGATCATTTTGAAGAAAAACAACGAGAACGCCGTCGCCGTCGCCATCGCCATCCC 788
> Ahg927618 jgi|Araly1|927618|scaffold_300075.1
Length=277
Score = 270 bits (146), Expect = 1e-71
Identities = 166/175 (95%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 27 TTCG-CCTTT-TTCTTTCACCGATCTGTGTTGCCGAGTGCCGACTCTCCGTAGTCTTATC 84
|||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTCGCCCTTTCTTCTTTCACCTATCTGTGTTGCCGAGTGCCGACTCTCCGTAGTCTTATC 218
Query 85 TCCGTCGCCGATCTGGATCTCGTCGTCGAATTCGCC-TTAATCCACCGCTGATTCTGAAT 143
|||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 217 TCCGTCGCCGATCTGGATCTCGTCGTCGAATTCGCCATTT-TCCACCGCTGATTCCGAAT 159
Query 144 TTTCCGTGTTCTCTCGTCGTCTCTGCCACCGTCACCGTCTCCCGTCGCCGTGTTC 198
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 158 TTTCTGTGTTCTCTCGTCGTCTCTGCCACCGTCACTGTCTCCCGTCGCCGTGTTC 104
Score = 128 bits (69), Expect = 9e-29
Identities = 81/87 (93%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 188 TCGCCGTGTTCGACCGCTGATTCTGAATTTTCCGTGTTCTCTCGGCGTCTCTGCCACCGT 247
||||| | ||| ||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 186 TCGCCATTTTCCACCGCTGATTCCGAATTTTCTGTGTTCTCTCGTCGTCTCTGCCACCGT 127
Query 248 CACTGTCTCCCGTCGCCGTGTTCCATT 274
|||||||||||||||||||||||||||
Sbjct 126 CACTGTCTCCCGTCGCCGTGTTCCATT 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5