BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18550.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929736 jgi|Araly1|929736|scaffold_302193.1 1742 0.0
> Ahg929736 jgi|Araly1|929736|scaffold_302193.1
Length=1310
Score = 1742 bits (943), Expect = 0.0
Identities = 1191/1305 (91%), Gaps = 39/1305 (3%)
Strand=Plus/Plus
Query 1 ATGAACAACAACATTTTCAGTACTAC-TACCACCATCAATGACGACTACATGTTATTCCC 59
||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 21 ATGAACAACAACACTTTCAGTACT-CTTACCACCATCAATGACGACTACATGTTATTCCC 79
Query 60 TTATAATGACCATTATTCCTCACAACCATTGCTCCCTTTTAGCCCTTCTTCTTCCATTAA 119
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 80 TTATAATGACCATAATTCCTCACAGCCATTGCTCCCTTTTAGCCCTTCTTCTTCCATTAA 139
Query 120 CGACATCTTGATTCACTCCACCTCTAACACATCAAACAATCATCTTGACCATCATCATCA 179
||| ||||||| | | || ||| |||||||||| | | | |||||||||||
Sbjct 140 CGATATCTTGA-T---T-CA-CTC---CACATCAAAC-A--A---T---CATCATCATCA 181
Query 180 ATTCCAACAACCTTCTCCTTTTTCTCACTTCGAATTTGCCCCGGACTGCGCCCTCCTCAC 239
||||| ||||||||||||||||||||| |||||||||| |||||| || |||||||||||
Sbjct 182 ATTCCTACAACCTTCTCCTTTTTCTCAATTCGAATTTGTCCCGGATTGTGCCCTCCTCAC 241
Query 240 CTCTTTCCACCCAGAAAACAATGGCCATGATGATAACCAAACCATCCCAAACGACAATCA 299
| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 242 CACTTTCAACCCACAAAACAATGGCCATGATGATAACCAAACCATCCCCAACGACAATCA 301
Query 300 TCATCCATCACTTCACTTTCCCTTGAACAACACCATTGTAGAACAACCCACTGAGCCCTC 359
||||||||||||||||||||||||||| |||||||||| ||| || ||| ||||||||||
Sbjct 302 TCATCCATCACTTCACTTTCCCTTGAATAACACCATTGGAGACCAGCCCGCTGAGCCCTC 361
Query 360 GGAAACTATAAACCTTATAGAAGATTCCCAGAGAATCTCAACTTCTCAAGACCCaaaaat 419
||||||||||| || ||||||||||||||||| || |||| ||||||||||||
Sbjct 362 GGAAACTATAACCCACATAGAAGATTCCCAGAG------AA--TCTC-AGACCCAAAAAT 412
Query 420 gaaaaaaGCCAAGAAACCCAGCAGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGG 479
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GAAAAAAGTCAAGAAACCAAGCAGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGG 472
Query 480 GACACGAGATCGTAGGATGAGACTCTCGCTAGATGTCGCCAAAGAGTTGTTTGGCTTACA 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GACAAGAGATCGTAGGATGAGACTCTCGCTAGATGTCGCCAAAGAGTTGTTTGGCTTACA 532
Query 540 AGACATGCTTGGATTTGACAAAGCCAGCAAAACCGTTGAATGGTTGCTTACACAAGCAAA 599
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 533 AGACATGCTTGGATTCGACAAAGCCAGCAAAACCGTTGAATGGTTGCTCACACAAGCGAA 592
Query 600 ACCTGAGATCATAAAGATCGCGACAACCCTTTCTCACCA-TGGCTGCTTCAGCAGCGGCG 658
||| ||||| ||||||||||| | |||||||||| |||| || | |||||||||||||||
Sbjct 593 ACCCGAGATAATAAAGATCGCCAAAACCCTTTCTTACCAATG-CAGCTTCAGCAGCGGCG 651
Query 659 ATGAGTCTCATATCCGACCGGTGTTAGGATCCATGGACACATCTTCTGATCTATGTGAAC 718
| |||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 652 ACGAGTCTCATACCCGACCGGAGTTAAGATCCATGGACACATCATCTGATCTATGTGAAC 711
Query 719 TTGCATCCATGTGGACGGTCGACGATAGAGGCAGCAATACTAACACGACCGAAACAAGAG 778
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTCCATCAATGTGGACGGTCGACGATAGAGGCAGCAATACTAACACGACCGAAACAAGAG 771
Query 779 GAAACAAGGTCGATGGGAGATCGATGAGAGGGAAGAGAAAGAGGCCAGAACCGCGAACGC 838
|||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct 772 GAAACAAGGTAGACGGTAGGTCAATGAGAGGGAAGAGAAAGAGGCCAGAACCGCGAACGC 831
Query 839 CCATTTTAAAGAAGTTGTCCAAGGAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTA 898
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 832 CCATTTTGAAGAAGTTGTCCAAGGACGAGAGAGCGAAAGCAAGAGAAAGAGCAAAGGATA 891
Query 899 GAACAATGGAGAAAATGATGATGAAGATGAAAGGAAGATCACAATTAGTGAAAGTTGTGG 958
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 892 GAACAATGGAGAAAATGATGATGAAGATGAAAGGAAGATCACAGTTAGTAAAAGTTGTGG 951
Query 959 AAGAAGACGCTCATGATCATGGTGAGATAATAAAGAATAATAATAGAAGCCAAGTGAATC 1018
||||||| |||||| ||||||||||||| || ||||||| || ||| | |||||||||
Sbjct 952 AAGAAGAAGCTCATCATCATGGTGAGATCATGAAGAATACTATTAGC-G--AAGTGAATC 1008
Query 1019 GGAGTTCTTTTGAGATGACACACTGCGAAGACAAGATCGAAGAACTTTGCAAGAACGATC 1078
||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1009 GGAATTCTTTTGAGATGTCACACTGCGAAGACGAGATCGAAAAACTTTGCAAGAACGATC 1068
Query 1079 GTTTTGCAGTTTGCAACGAATTTATCATGAATAAGAAAGATCACATTTCAAATGAATCTT 1138
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1069 GATTTGCAGTTTGCAACGAATTTGTCATGAATAAGAAAGATCACATTTCAAACGAATCTT 1128
Query 1139 ATGACTTAGTCAACTACAAACCGAACTCATCATTCCCAGTGATTAACCACCATCGCAGCC 1198
||||| |||||||||||||| |||||||||||| ||||||||||| ||||| |||||||
Sbjct 1129 ATGACATAGTCAACTACAAATTGAACTCATCATTTCCAGTGATTAATCACCACCGCAGCC 1188
Query 1199 AAGGAGCAGCTAATTCCATTGAGCAGCATCAGTTTACGGATCTTCATTACTCCTTCGGCG 1258
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
Sbjct 1189 AAGGAGCAGCTAATTCTATTGAGCAGCATCAGTTTACGGATCTTCATAACTCCTT-GGTG 1247
Query 1259 -CGAAACCAAGAGACCTCATGCACAACTATCAAAACATGTATTGA 1302
|||||||| || ||||||| |||||||||||||||||||||||
Sbjct 1248 GCGAAACCA-GA--CCTCATGTACAACTATCAAAACATGTATTGA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5