BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18560.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929738 jgi|Araly1|929738|scaffold_302195.1 1000 0.0
Ahg952197 jgi|Araly1|952197|scaffold_45100002.1 263 2e-69
> Ahg929738 jgi|Araly1|929738|scaffold_302195.1
Length=630
Score = 1000 bits (541), Expect = 0.0
Identities = 599/628 (95%), Gaps = 0/628 (0%)
Strand=Plus/Plus
Query 55 CTTTTTCACTTACCGGAGAAATGGAGAGATCGACGCCGGAACATGTCTCCTCCGCACACA 114
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CTTTTTCACTAACCGGAGAAATGGAGAGATCAACGCCGGAACATGTCTCCTCCGCACACA 60
Query 115 AGCGCATAAGCGTGAGCTTCCTCGTGTCTCTCATGGTACTTTGTGCTAGACACGCAAGCA 174
||||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 61 AGCGCCTAAGTGTGAGCTTCCTCGTATCTCTCATGGTAAATTGTGCTAGACACGCAAGCA 120
Query 175 GAGTTTCCAAGAAGCTTAAACCCAAGAAGACTCGGAAGCAAACTCATCTTGAAGACTATC 234
||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||
Sbjct 121 GAGTTTCCAAGAAGCTTAAGCCCAAGACGTCTCGGAAGCAAACTCATCTCGAAGACTATC 180
Query 235 TCGAAAGCCCTAAGTCTAACGGAAACGGTAGCGAAGACGGTAGAGGAGGAGGAAGGTTTG 294
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 181 TCGAAAGCCCTAGGTCTAACGGAAACGGTGGCGAAGACGGCAGAGGAGGAGGAAGGTTTG 240
Query 295 GATGGAGTCCGGCAAGGACTTTTTCTCCTATGAGGGTGCGTCCTAAGGAGCTCTACACGA 354
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 241 GATGGAGTCCCGCACGGACTTTTTCTCCGATGAGGGTGCGTCCTAAGGAGCTCTATACGA 300
Query 355 CCTTGAGCAACAAGGCGATGACTATGGTTGGCCGGAAAAACAAAGCTTACGACGGTGGTC 414
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CCTTGAGCAACAAGGCGATGACTATGGTTGGCCGGAAAAACAAAGCTTACAACGGTGGTC 360
Query 415 CGACGAAGAAGACGGCGGTGGAGATGGTGATGGAGGAGGATGAGGAAGAGTACGGCGTTT 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 CGACGAAGAAGACGGCGGTGGAGATGGTGATAGAGGAGGATGAGGAAGAGTACGGCGTTT 420
Query 475 GGCAGAGGGAGATTTTGATGGGAGGAAAATGTGAGCCGTTGGATTACTCAGGCGTGATCT 534
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 GGCAGAGGGAGATTTTGATGGGAGGAAAATGTGAGCCGTTGGATTACTCCGGCGTGATCT 480
Query 535 ACTACGATTGTAGTGGACATCAGCTAAAACAAGTGCCTCCAAGGTCTCCACGTGCCAGTT 594
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 481 ACTACGATTGTAGTGGACATCAGCTAAGAGAAGTGCCTCCAAGGTCGCCACGTGCCAGTT 540
Query 595 TGGTTCCGGAGCGCCCGACTCGTTCTTATGTCGGGTCATTGTTAAACCCGACGGGAAAGG 654
||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct 541 TGGTTCCGGAGCGCCAGACCCGTTCTTATGTTGGGTCATTGTTAAACCCGACCGGAAAAG 600
Query 655 AAATTTAAATTTTAGTTTGAGAATTTGA 682
||||||||||||||||||||||||||||
Sbjct 601 AAATTTAAATTTTAGTTTGAGAATTTGA 628
> Ahg952197 jgi|Araly1|952197|scaffold_45100002.1
Length=193
Score = 263 bits (142), Expect = 2e-69
Identities = 160/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 55 CTTTTTCACTTACCGGAGAAATGGAGAGATCGACGCCGGAACATGTCTCCTCCGCACACA 114
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CTTTTTCACTAACCGGAGAAATGGAGAGATCAACGCCGGAACATGTCTCCTCCGCACACA 60
Query 115 AGCGCATAAGCGTGAGCTTCCTCGTGTCTCTCATGGTACTTTGTGCTAGACACGCAAGCA 174
||||| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 61 AGCGCCTAAGTGTGAGCTTCCTCGTATCTCTCATGGTAATTTGTGCTAGACACGCAAGCA 120
Query 175 GAGTTTCCAAGAAGCTTAAACCCAAGAAGACTCGGAAGCAAACTCATCT 223
|||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 121 GAGTTTCCAAGAAGCTTAAACCTAAGACGAGTCGGAAGCAAACTCATCT 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5