BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18570.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479362 jgi|Araly1|479362|fgenesh2_kg.3__2063__AT3G18570.1 957 0.0
Ahg497429 jgi|Araly1|497429|fgenesh2_kg.451__1__AT3G18570.1 955 0.0
> Ahg479362 jgi|Araly1|479362|fgenesh2_kg.3__2063__AT3G18570.1
Length=662
Score = 957 bits (518), Expect = 0.0
Identities = 605/646 (94%), Gaps = 9/646 (1%)
Strand=Plus/Plus
Query 13 AAAACAACAATCGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 72
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAACAATAGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 60
Query 73 GCCCAAT-TATGGTAG---CACCGCCACCACCACCGTTAGCAACAGCCCCATCTCGTCGT 128
|||| || || ||||| |||| ||||| |||| |||||||||||||||||| |||||
Sbjct 61 GCCC-ATCTACGGTAGCTCCACCACCACCCCCACTGTTAGCAACAGCCCCATCGCGTCGG 119
Query 129 TTTTCCATCAGCTCCGATCCCATTCACCAACATCCTCGCAGCTCTTTGGTTTCCTCGCTC 188
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 120 TTTTCCATCAGCTCCGATCTCATTCTCCAACCTCCTCGCAGCTCTTTGGTTTCCTCGCTC 179
Query 189 TCTTTATCTCCACTGGCATCCTCCTCTTCCTCCTTGGTGTAAGCGTCACCGCTGCCGTGC 248
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 180 TCTTTATCTCCAGTGGAATCCTCCTCTTCCTCCTCGGTGTAAGCGTCACCGCCGCCGTGC 239
Query 249 TCGGCTTCATTGTCTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TCGGCTTCATTGTGTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCTGTTT 299
Query 309 TTGTCGTCGTTGGCGGGTTCTTAACGGTCTCCGGATTTCTTGTCGGAACGGTGGCTTTAG 368
||||| |||| |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 300 TTGTCCTCGTGGGCGGGTTCTTAACGGTCTCTGGATTTCTGGTCGGAACGGTGACAGTCC 359
Query 369 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 419
Query 429 ATGCACGTAGTAGGATCTATGACACGGCATCTCACGTCAAAGATTACGCTAGAGAATACG 488
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 ATGCACGTAGTCGGATCTATGACACGGCCTCTCACGTCAAAGATTACGCTAGAGAATACG 479
Query 489 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 539
Query 549 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCACGGTTCGATTTATGGAGGAGGAACAC 608
||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 540 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCGCGGTACGATTTATGGAGCAGGAACAC 599
Query 609 GGTTCATGGTAATAT--TACATTTTCTTATTTTGTTTCCGTTTATA 652
||||||||||| ||| || |||||||||||||||| ||||| |||
Sbjct 600 GGTTCATGGTATTATACTATATTTTCTTATTTTGTT-CCGTT-ATA 643
> Ahg497429 jgi|Araly1|497429|fgenesh2_kg.451__1__AT3G18570.1
Length=687
Score = 955 bits (517), Expect = 0.0
Identities = 601/641 (94%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 13 AAAACAACAATCGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 72
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAACAATAGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 60
Query 73 GCCCAAT-TATGGTAGCACCGCCACCA---CCACCGTTAGCAACAGCCCCATCTCGTCGT 128
|||| || || |||||| || |||||| |||| |||||||||||||||||| |||||
Sbjct 61 GCCC-ATCTACGGTAGCTCCACCACCACTCCCACTGTTAGCAACAGCCCCATCGCGTCGG 119
Query 129 TTTTCCATCAGCTCCGATCCCATTCACCAACATCCTCGCAGCTCTTTGGTTTCCTCGCTC 188
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 120 TTTTCCATCAGCTCCGATCTCATTCTCCAACCTCCTCGCAGCTCTTTGGTTTCCTCGCTC 179
Query 189 TCTTTATCTCCACTGGCATCCTCCTCTTCCTCCTTGGTGTAAGCGTCACCGCTGCCGTGC 248
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 180 TCTTTATCTCCAGTGGAATCCTCCTCTTCCTCCTCGGTGTAAGCGTCACCGCCGCCGTGC 239
Query 249 TCGGCTTCATTGTCTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCGGCTTCATTGTGTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 299
Query 309 TTGTCGTCGTTGGCGGGTTCTTAACGGTCTCCGGATTTCTTGTCGGAACGGTGGCTTTAG 368
||||| |||| |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 300 TTGTCCTCGTGGGCGGGTTCTTAACGGTCTCTGGATTTCTGGTCGGAACGGTGACAGTCC 359
Query 369 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 419
Query 429 ATGCACGTAGTAGGATCTATGACACGGCATCTCACGTCAAAGATTACGCTAGAGAATACG 488
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 ATGCACGTAGTCGGATCTATGACACGGCCTCTCACGTCAAAGATTACGCTAGAGAATACG 479
Query 489 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 539
Query 549 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCACGGTTCGATTTATGGAGGAGGAACAC 608
||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 540 GTATAGTCTGGGGCAGGGTAGTATTAACCGATCGCGGTACGATTTATGGAGCAGGAACAC 599
Query 609 GGTTCATGGTAATAT--TACATTTTCTTATTTTGTTTCCGT 647
||||||||||| ||| || |||||||||||||||||||||
Sbjct 600 GGTTCATGGTATTATACTATATTTTCTTATTTTGTTTCCGT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5