BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18570.1 Length=747 Score E Sequences producing significant alignments: (Bits) Value Ahg479362 jgi|Araly1|479362|fgenesh2_kg.3__2063__AT3G18570.1 957 0.0 Ahg497429 jgi|Araly1|497429|fgenesh2_kg.451__1__AT3G18570.1 955 0.0 > Ahg479362 jgi|Araly1|479362|fgenesh2_kg.3__2063__AT3G18570.1 Length=662 Score = 957 bits (518), Expect = 0.0 Identities = 605/646 (94%), Gaps = 9/646 (1%) Strand=Plus/Plus Query 13 AAAACAACAATCGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 72 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAACAACAATAGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 60 Query 73 GCCCAAT-TATGGTAG---CACCGCCACCACCACCGTTAGCAACAGCCCCATCTCGTCGT 128 |||| || || ||||| |||| ||||| |||| |||||||||||||||||| ||||| Sbjct 61 GCCC-ATCTACGGTAGCTCCACCACCACCCCCACTGTTAGCAACAGCCCCATCGCGTCGG 119 Query 129 TTTTCCATCAGCTCCGATCCCATTCACCAACATCCTCGCAGCTCTTTGGTTTCCTCGCTC 188 ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| Sbjct 120 TTTTCCATCAGCTCCGATCTCATTCTCCAACCTCCTCGCAGCTCTTTGGTTTCCTCGCTC 179 Query 189 TCTTTATCTCCACTGGCATCCTCCTCTTCCTCCTTGGTGTAAGCGTCACCGCTGCCGTGC 248 |||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 180 TCTTTATCTCCAGTGGAATCCTCCTCTTCCTCCTCGGTGTAAGCGTCACCGCCGCCGTGC 239 Query 249 TCGGCTTCATTGTCTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 308 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 240 TCGGCTTCATTGTGTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCTGTTT 299 Query 309 TTGTCGTCGTTGGCGGGTTCTTAACGGTCTCCGGATTTCTTGTCGGAACGGTGGCTTTAG 368 ||||| |||| |||||||||||||||||||| |||||||| |||||||||||| | | Sbjct 300 TTGTCCTCGTGGGCGGGTTCTTAACGGTCTCTGGATTTCTGGTCGGAACGGTGACAGTCC 359 Query 369 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 419 Query 429 ATGCACGTAGTAGGATCTATGACACGGCATCTCACGTCAAAGATTACGCTAGAGAATACG 488 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 420 ATGCACGTAGTCGGATCTATGACACGGCCTCTCACGTCAAAGATTACGCTAGAGAATACG 479 Query 489 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 539 Query 549 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCACGGTTCGATTTATGGAGGAGGAACAC 608 ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 540 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCGCGGTACGATTTATGGAGCAGGAACAC 599 Query 609 GGTTCATGGTAATAT--TACATTTTCTTATTTTGTTTCCGTTTATA 652 ||||||||||| ||| || |||||||||||||||| ||||| ||| Sbjct 600 GGTTCATGGTATTATACTATATTTTCTTATTTTGTT-CCGTT-ATA 643 > Ahg497429 jgi|Araly1|497429|fgenesh2_kg.451__1__AT3G18570.1 Length=687 Score = 955 bits (517), Expect = 0.0 Identities = 601/641 (94%), Gaps = 7/641 (1%) Strand=Plus/Plus Query 13 AAAACAACAATCGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 72 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAACAACAATAGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 60 Query 73 GCCCAAT-TATGGTAGCACCGCCACCA---CCACCGTTAGCAACAGCCCCATCTCGTCGT 128 |||| || || |||||| || |||||| |||| |||||||||||||||||| ||||| Sbjct 61 GCCC-ATCTACGGTAGCTCCACCACCACTCCCACTGTTAGCAACAGCCCCATCGCGTCGG 119 Query 129 TTTTCCATCAGCTCCGATCCCATTCACCAACATCCTCGCAGCTCTTTGGTTTCCTCGCTC 188 ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| Sbjct 120 TTTTCCATCAGCTCCGATCTCATTCTCCAACCTCCTCGCAGCTCTTTGGTTTCCTCGCTC 179 Query 189 TCTTTATCTCCACTGGCATCCTCCTCTTCCTCCTTGGTGTAAGCGTCACCGCTGCCGTGC 248 |||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 180 TCTTTATCTCCAGTGGAATCCTCCTCTTCCTCCTCGGTGTAAGCGTCACCGCCGCCGTGC 239 Query 249 TCGGCTTCATTGTCTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 308 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCGGCTTCATTGTGTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 299 Query 309 TTGTCGTCGTTGGCGGGTTCTTAACGGTCTCCGGATTTCTTGTCGGAACGGTGGCTTTAG 368 ||||| |||| |||||||||||||||||||| |||||||| |||||||||||| | | Sbjct 300 TTGTCCTCGTGGGCGGGTTCTTAACGGTCTCTGGATTTCTGGTCGGAACGGTGACAGTCC 359 Query 369 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 419 Query 429 ATGCACGTAGTAGGATCTATGACACGGCATCTCACGTCAAAGATTACGCTAGAGAATACG 488 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 420 ATGCACGTAGTCGGATCTATGACACGGCCTCTCACGTCAAAGATTACGCTAGAGAATACG 479 Query 489 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 539 Query 549 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCACGGTTCGATTTATGGAGGAGGAACAC 608 ||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 540 GTATAGTCTGGGGCAGGGTAGTATTAACCGATCGCGGTACGATTTATGGAGCAGGAACAC 599 Query 609 GGTTCATGGTAATAT--TACATTTTCTTATTTTGTTTCCGT 647 ||||||||||| ||| || ||||||||||||||||||||| Sbjct 600 GGTTCATGGTATTATACTATATTTTCTTATTTTGTTTCCGT 640 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27524746074 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5