BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18580.1
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479363 jgi|Araly1|479363|fgenesh2_kg.3__2064__AT3G18580.1 1098 0.0
> Ahg479363 jgi|Araly1|479363|fgenesh2_kg.3__2064__AT3G18580.1
Length=803
Score = 1098 bits (594), Expect = 0.0
Identities = 738/804 (92%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 1 GGCACTTTATTCCAAAATATTCTAATCACTTTCTCCGCTCTTTAGCCCTTTAGGGTTTAT 60
|||||||| | ||||||| ||| ||||||| |||||||||||||| |||||||||||||
Sbjct 1 GGCACTTTGTCCCAAAATGTTCCAATCACTCTCTCCGCTCTTTAGACCTTTAGGGTTTAA 60
Query 61 GACGTTAAACCCAGAATCCAACA-TT-T-G-ACGATTCGATTC-GAAAATCTCAGTGAAG 115
||||||||||||||| ||||||| || | | | |||||| || |||| ||||||||||
Sbjct 61 GACGTTAAACCCAGATTCCAACATTTCTCGTTCAATTCGA-TCTGAAATTCTCAGTGAAC 119
Query 116 ATCGAAAATGGCGAATTCAATGGCTACACTTTCTAGAAGACTCTATCGATCTCTTCTATC 175
|| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 120 ATAAAAAATGGCGAATTCAGTGGCTACGCTTTCGAGAAGACTCTATCGATCTCTTCTCTC 179
Query 176 GAACCCTAGAATTTCTCAAGCTTCCATGTCTTTCTGTACCAACAACATCACTTCCCCAGA 235
||||||||||||||||||| |||||||||||||||| |||||||||||| | |||| |||
Sbjct 180 GAACCCTAGAATTTCTCAATCTTCCATGTCTTTCTGCACCAACAACATCTCCTCCCGAGA 239
Query 236 AGACTCCGACTTTGACGAGTTA---G-------A-AT-C-G-----CCCATTGAACCAAA 277
|||||||||||||||||||||| | | || | | ||||||||||| ||
Sbjct 240 AGACTCCGACTTTGACGAGTTATCTGCTAACTCAGATACTGAATCCCCCATTGAACCCAA 299
Query 278 GGCCTCAGATCCAGTTTCTCGATTTTCCGGAGAAGAACGCGTTATGGAAGAGCGTCCACT 337
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GGCTTCTGATCCAGTTTCTCGATTTTCCGGAGAAGAACGCGTGATGGAAGAGCGTCCACT 359
Query 338 CGAAAATGGCCTTGACTCTGGCATTTTCAAGGCAATATTGGTGGGGCAAGTGGGTCAGCT 397
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CGAAAATGGCCTTGACTCTGGCATTTTCAAGGCGATATTGGTGGGGCAAGTGGGTCAGCT 419
Query 398 TCCTCTGCAGAAGAAGCTTAAGAGTGGTAGAACTGTCACTCTCTTCTCTGTAGGAACTGG 457
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 420 TCCTCTGCAGAAGAAGCTTAAGAGTGGTAGAACAGTCACACTCTTCTCTGTAGGAACTGG 479
Query 458 TGGGATCAGGAACAACCGGAGACCGCTTATTAACGAAGATCCGAGAGAGTATGCGAGCCG 517
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TGGGATCAGGAACAACCGGAGACCGCTTATTAACGAAGACCCGAGAGAGTATGCGAGCCG 539
Query 518 GTCTGCGGTGCAGTGGCACCGTGTCTCTGTTTACCCTGAACGCTTGGCAGATCTTGTGTT 577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GTCTGCGGTGCAGTGGCACCGTGTCTCTGTTTACCCTGAACGCTTGGCAGAGCTTGTGTT 599
Query 578 GAAGAATGTTGAACCCGGTACTGTTATCTACTTAGAGGGTAATCTGGAGACGAAGATATT 637
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 600 GAAGAATGTTGAACCAGGTACGGTTATCTACTTGGAGGGTAATCTGGAGACAAAGATTTT 659
Query 638 CACTGATCCTGTCACTGGTTTGGTTCGACGTATAAGAGAAGTAGCAATTCGTAGAAACGG 697
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CACTGATCCAGTCACTGGTTTGGTTCGACGTATAAGAGAAGTAGCAATTCGTAGAAACGG 719
Query 698 CCGAGTTGTGTTTTTGGGAAAAGCCGGTGATATGCAGCAACCGAGTTCTGCTGAGCTTAG 757
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 CCGAGTCGTGTTTTTGGGAAAAGCCGGTGATATGCAGCAACCAAGTTCTGCTGAGCTTAG 779
Query 758 AGGCGTTGGCTACTACTGATTTTT 781
|||||||||||| |||||| ||||
Sbjct 780 AGGCGTTGGCTATTACTGAATTTT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28973416920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5