BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18590.1
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479364 jgi|Araly1|479364|fgenesh2_kg.3__2065__AT3G18590.1 915 0.0
> Ahg479364 jgi|Araly1|479364|fgenesh2_kg.3__2065__AT3G18590.1
Length=567
Score = 915 bits (495), Expect = 0.0
Identities = 544/568 (96%), Gaps = 2/568 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCATCAAAGAAGATCATTATCGTTATGTTTCTTGTAACATTTTACATGTTTTCA 60
||||||||||| |||||||||||| |||||| |||| ||||| |||||||||||||||||
Sbjct 1 ATGGATTCATCGAAGAAGATCATTCTCGTTACGTTTATTGTATCATTTTACATGTTTTCA 60
Query 61 TGTGTTTCAAGCACTGAATTTGAAGTTGGAGGAGAAAATGGTTGGATCGTACCAAAATCT 120
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 61 TGTGTATCAAGCACTGAATTTGAAGTTGGAGGAGAAGATGGTTGGATCGTACCAAAGTCT 120
Query 121 AAGACTCTTGGAGATGCGTTTAACCAATGGGCGTCAGATAACCGGTTTAAAGTTGGTGAC 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 121 AAGACTCTTGGAGATGCGTTTAACCAATGGGCTTCAGATAACCGGTTTAAAGTTGGCGAC 180
Query 181 ACTCTCCGTTTCAAGTACACGAAAGACTCAGTGTTAGTGGTGTCAGAAGAAGAGTACAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTCCGTTTCAAGTACACGAAAGACTCAGTGTTAGTGGTGTCAGAAGAAGAGTACAAG 240
Query 241 AAATGCAAAGCGACCAAACCACAACTCTACTCAAACAACGAAGACACTGTTTTCAAACTA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATGCAAAGCGACCAAACCGCAACTCTACTCAAACAACGAAGACACTGTTTTCAAACTA 300
Query 301 GACCGACCCGGTTTGTTTTACTTCATCAGCGGTGTCTCTGGCCACTGCGAAAAGGGTCAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACCGACCCGGTTTGTTTTACTTCATCAGCGGTGTCTCTGGCCACTGCGAAAAGGGTCAG 360
Query 361 AAGATGATCGTAAAAGTTATGGAGACGGAGTCTTCTACAGAGTCTCCTCCTCCATCCtct 420
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 361 AAGATGATCGTAAAAGTTATGGAGACTGAGTCTTCCACAGAGTCTCCTCCTCCTTCATCT 420
Query 421 tcttcttcttcttcGTCATCATCATCTCTTCCGGCGTCAACTCCCAAGGCCAAGAAGAGC 480
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TCATCTTCATCTTCGTCATCATCATCTCTTCCGGCTTCAACTCCCAAGGCCAAGAAGAGC 480
Query 481 AATGCCTTCAAAACCGCAGTCCAGTTCAGTAGTTCCGGTTTTGTTGTCTCTGCTGTTCT- 539
||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 481 AATGCCTACAAAACCGCGGTCCAGTTCAGTAGTTCCGGTTTTGTTGTCTTTGCCGTTCTT 540
Query 540 GATTGTTTCAGTTTTTGGTTTGGTTTAG 567
| ||||||||||||||||||||||||||
Sbjct 541 G-TTGTTTCAGTTTTTGGTTTGGTTTAG 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20718484827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5