BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18600.1
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479365 jgi|Araly1|479365|fgenesh2_kg.3__2066__AT3G18600.1 2656 0.0
Ahg496826 jgi|Araly1|496826|fgenesh2_kg.8__2642__AT5G65900.1 449 3e-125
> Ahg479365 jgi|Araly1|479365|fgenesh2_kg.3__2066__AT3G18600.1
Length=1904
Score = 2656 bits (1438), Expect = 0.0
Identities = 1714/1843 (93%), Gaps = 35/1843 (2%)
Strand=Plus/Plus
Query 39 ctctctcAACTTCTTCCACAGCAAATTTCTTCGATTCTCTGAGCTCTCTCCCATCCTTTT 98
|||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 22 CTCTCTCAACTTCTTCAAAAGCAAATTTCTTCGATTCTCTGAGCTCTCTCGCATCC--TT 79
Query 99 CAAGTGGCTTCGTTTCTAAAAAATTGATTGG-TTGAAGAAAGTGGAAACATGGTTGAATC 157
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 80 CAAGTGGCTTCGTTTCTAAAAAATTGATTGGTTTG-AGAAAGAGGAAACATGGTTGAATC 138
Query 158 GGACAAGTCATCCGTTGAAGAGCTGAAGAAGAGGGTTAGGAAGA-GAAGCCGTGGGAAGA 216
||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 139 GGACAAGACATCCGTTGAAGAGCTGAAGAAGAGGGTAAGGAAGAGGAA-TCGTGGGAAGA 197
Query 217 AGAATGAGCAGCAAAAGGCTGAAGAAAAAACCCACACTGTAGAGGAAAACGCTGATGAAA 276
|||||||||||||||| || || ||| | |||||| |||||||||||||||||| ||||
Sbjct 198 AGAATGAGCAGCAAAAAGCGGAGGAAGATTCCCACAGTGTAGAGGAAAACGCTGACGAAA 257
Query 277 CGCagaagaagagtgaaaagaaggttaag--a---aag-t------gagaggcaaaatcg 324
|||||||||||||||||||||||||||| | ||| | ||||||||||| ||
Sbjct 258 AGCAGAAGAAGAGTGAAAAGAAGGTTAAGAAAGTGAAGTTGCAAGGGAGAGGCAAAACCG 317
Query 325 aggaagaggaaga--aa-aggTGGAAGCAATGGAAGATGGTGAAGATGAGAAGAATATTG 381
||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
Sbjct 318 AGGAAGAGGAAGACGAAGAGGTGGAAGCAATGGAAGATGGTGAAGAAGAGAAGAATCCCG 377
Query 382 TGATTGTCGGGAAAGGGATAATGACTAATGTGACTTTTGATTCCCTCGACTTATCTGAGC 441
|||||||||| ||||||||||||||| ||| ||||||||| ||||| |||||||||||||
Sbjct 378 TGATTGTCGGAAAAGGGATAATGACTGATGAGACTTTTGACTCCCTGGACTTATCTGAGC 437
Query 442 AAACTTCTATAGCTATCAAGGAGATGGGCTTTCAGTACATGACGCAAATTCAAGCTGGAT 501
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 438 AAACGTCTATAGCTATCAAGGAGATGGGCTTTCAATACATGACGCAAATTCAAGCTGGGT 497
Query 502 CAATTCAGCCCCTTTTGGAGGGGAAGGATGTTCTTGGTGCTGCCAGAACTGGTTCTGGTA 561
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 498 CAATTCGGCCCCTTTTGGAGGGGAAGGATGTTCTTGGTGCTGCCAGGACTGGTTCTGGTA 557
Query 562 AAACTCTTGCTTTTCTCATTCCGGCTGTTGAGTTGCTGTTTAAAGAGCGTTTCTCTCCTC 621
||||||||||||||||||| |||||||| ||||||||| ||||| | | ||| |||||||
Sbjct 558 AAACTCTTGCTTTTCTCATACCGGCTGTAGAGTTGCTGCTTAAACATCATTTTTCTCCTC 617
Query 622 GCAACGGGACTGGTGTGATTGTTATTTGCCCCACAAGGGAACTTGCTATCCAGACTAAAA 681
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 618 GCAACGGGACTGGTGTAATTGTTATTTGCCCCACAAGGGAACTTGCTATCCAGACAAAAA 677
Query 682 ATGTGGCGGAGGAGTTACTCAAGCATCATTCACAGACAGTCAGCATGGTTATTGGTGGCA 741
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 678 ATGTGGCAGAGGAGTTACTCAAGCATCATTCACAGACAGTCGGCATGGTTATTGGTGGCA 737
Query 742 ATAACAGAAGGTCGGAAGCACAACGCATTGCCAGTGGTTCAAACTTGGTGATAGCAACTC 801
||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 738 ATAACAGAAGGTCGGAAGCACAACGCATTGCGAATGGTTCAAACTTGTTGATAGCAACTC 797
Query 802 CTGGTCGTCTTCTTGACCATCTTCAGAATACAAAGGCTTTCATTTATAAACACTTGAAGT 861
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 798 CTGGGCGTCTTCTTGACCATCTTCACAATACAAAGGCTTTCATTTATAAACACTTGAAGT 857
Query 862 GCCTTGTGATCGATGAAGCTGATAGGATACTGGAAGAGAATTTTGAGGAAGACATGAATA 921
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 858 GCCTTGTGATTGATGAAGCTGATAGGATACTGGAAGATAATTTTGAGGAAGACATGAATA 917
Query 922 AGATTCTAAAGATTTTACCAAAGACTAGGCAAACTGCGTTATTCTCTGCCACCCAGACCT 981
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 918 AGATTCTAAAGATTTTACCAAAGACTAGGCAAACTGCGTTATTCTCCGCTACCCAGACCT 977
Query 982 CTAAGGTTAAAGATCTTGCTCGGGTGTCATTGACATCACCTGTTCATGTGGATGTCGATG 1041
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 978 CTAAGGTTAAAGATCTTGCTCGGGTGTCACTGACATCACCTGTTCATGTTGATGTTGATG 1037
Query 1042 ATGGCAGACGCAAGGTGACAAATGAAGGATTGGAGCAAGGCTATTGTGTTGTTCCGAGCA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATGGCAGACGCAAGGTGACAAATGAAGGATTGGAGCAAGGCTATTGTGTTGTTCCGAGCA 1097
Query 1102 AACAA-AGACTTATCCTTCTAATTTCCTTTTTGAAAAAGAACCTAAATAAAAAGATTATG 1160
|| || |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1098 AA-AATAGACTTATCCTTCTAATTACCTTTTTAAAAAAGAACCCAAATAAAAAGATTATG 1156
Query 1161 GTATTTTTCTCGACTTGCAAGTCGGTACAATTCCATACGGAAATCATGAAAATAAGCGAC 1220
|| |||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
Sbjct 1157 GTCTTTTTCTCGACTTGCAAGTCCGTACAATTCCATGCTGAAATCATGAAAATAAGCAAT 1216
Query 1221 GTGGATGTCTCTGATATTCATGGAGGCATGGATCAGAACAGAAGAACTAAAACCTTTTTC 1280
|||||| ||| |||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 1217 GTGGATTTCTGTGATATCCATGGAGGCCTAGATCAGAACAGAAGAACTAAAACCTTTTTT 1276
Query 1281 GACTTCATGAAAGCAAAGAAAGGTATCTTGTTATGTACTGATGTTGCTGCTCGTGGTCTC 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GACTTCATGAAAGCAAAGAAAGGTATCTTGTTATGTACTGATGTTGCTGCTCGTGGTCTC 1336
Query 1341 GATATTCCTTCCGTGGACTGGATTATACAGTATGATCCACCAGACAAGCCAACGGAATAT 1400
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1337 GATATTCCTTCAGTGGACTGGATTATTCAGTATGATCCACCAGACAAGCCAACGGAATAT 1396
Query 1401 ATCCATAGGGTTGGTCGAACAGCCCGTGGAGAAGGAGCAAAGGGAAAGGCATTACTTGTC 1460
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1397 ATCCATAGGGTTGGTCGAACAGCCCGTGGAGAGGGAGCAAAGGGAAAGGCATTGCTTGTC 1456
Query 1461 TTGATTCCTGAAGAACTTCAGTTTATTCGCTACCTGAAGGCTGCGAAAGTACCTGTTAAA 1520
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 TTGATTCCTGAAGAGCTCCAGTTTATTCGCTACCTGAAGGCTGCGAAAGTACCTGTTAAA 1516
Query 1521 GAGCTTGAGTTCAATGAGAAGAGGCTTA-GTAATGTTCA-ATCTGCGCTGGAGAAATGTG 1578
||||||||||||||||||| || ||||| | |||||| | ||||| ||||||||||||||
Sbjct 1517 GAGCTTGAGTTCAATGAGAGGAAGCTTATG-AATGTT-AGATCTGAGCTGGAGAAATGTG 1574
Query 1579 TTGCC-AAGGACTACAATCTGAACAAGTTAGCCAAAGATGCGTACAGGGCTTATCTCTCA 1637
||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 1575 TTGCCGAAG-ACTACAATCTGAACAAGTTAGCCAAGGATGCGTACCGGGCTTATATCTCA 1633
Query 1638 GCATACAATTCACACTCTTTGAAAGACATCTTTAATGTTCACCGACTTGACCTCCTGGCT 1697
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 1634 GCATACAATTCACACTCTTTGAAAGACATCTTTAATGTTCACCGACTCGATCTCCAGGAG 1693
Query 1698 GTTGCTGAATCGTTCTGCTTCTCTTCGCCGCCTAAAGTGAATCTGAACATAGAAAGTGGA 1757
||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 1694 GTTGCGGCATCGTTCTGCTTCTCTGCGCCGCCTAAGGTGAATCTGAACATAGAAAGTCGA 1753
Query 1758 GCTGGGAAGGTGAGGAAGGCGAGAAAGCAGCAAGGTCGCAATGGCTTCAGTCCTTACAGT 1817
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
Sbjct 1754 GCTGGGAAGGTGAGGAAGGCGA-A--GCAACAAGGTCGCAATGGCTTCAGTCCTTACAAT 1810
Query 1818 CCCTATGGCAAGTCCACACCTACAAAGGAGGCATAAAGTGTCA 1860
|||||||||||||||||||||| || |||||||||||||||
Sbjct 1811 CCCTATGGCAAGTCCACACCTA-AAT--AGGCATAAAGTGTCA 1850
> Ahg496826 jgi|Araly1|496826|fgenesh2_kg.8__2642__AT5G65900.1
Length=1867
Score = 449 bits (243), Expect = 3e-125
Identities = 1013/1373 (74%), Gaps = 99/1373 (7%)
Strand=Plus/Plus
Query 399 ATAATGACTAATGTGACTTTTGATTCCCTCGAC-TTATCTGAGCAA-ACTTCTATAGCTA 456
||||||||||||| || ||||| | | | | | |||||||| || || | || | |||
Sbjct 415 ATAATGACTAATGAAACGTTTGAGT-CATTGTCATTATCTGA-TAACACCTATAAATCTA 472
Query 457 TCAAGGAGATGGGCTTT-CAGTACATGACGCAAATTCAAGCTGGATCAATT-CAGCCCCT 514
||||||||||||| ||| || |||||| || || |||||| | ||||| || || |
Sbjct 473 TCAAGGAGATGGGTTTTGCA-CGCATGACTCAGATACAAGCTAAAGCAATTCCA--CCAT 529
Query 515 T-TTGGA-GGGGAAGGATGTTCTTGGTGCTGCCAGAACTGGTTCTGGTAAAACTCTT-GC 571
| | || ||| || ||||| ||||| |||||||| || |||||||||||||| ||| ||
Sbjct 530 TGAT-GATGGGAAAAGATGTACTTGGAGCTGCCAGGACCGGTTCTGGTAAAAC-CTTAGC 587
Query 572 TTTTCTCATTCCGGCTGTTGAG-TTGCTGTTTAAAGAGC-GTTTCTCTCCTCGCAACGGG 629
|||||| ||||| |||| ||| || || | | | | |||| |||||||||| ||
Sbjct 588 TTTTCTTATTCCTGCTGCAGAGCTT-CTATACCATGTCCGGTTT-ACTCCTCGCAATGGA 645
Query 630 ACTGGTGTGATTGTTATTTGCCCCACAAGGGAACTTGCTATCCAGAC-TAAAAATGTGGC 688
|||||||| || || |||||||| ||||| || |||||||| ||| | || | || ||
Sbjct 646 ACTGGTGTTATCGTCATTTGCCCAACAAGAGAGCTTGCTATTCAGTCTTATGGA-GTAGC 704
Query 689 -GGAGGAGTTACTCAAGCATCATTCACAGACAGTCAGCATGGTTATTGGTGGCAATAACA 747
|| | || || ||| ||||||||||||| || | | |||||||| || | ||||
Sbjct 705 AAAAGAACTT-CTTAAGTATCATTCACAGACTGTGGGAAAAGTTATTGGCGGTGAGAACA 763
Query 748 GAAGGTCGGAAGCACA-ACGCATTGCCAGTGGT-TCAAACTTGGTGA-TAGCAACTCCTG 804
||| | ||||| | | | |||||| ||| | || || | | |||| || ||||
Sbjct 764 GAAAGAAAGAAGCTGAGATTC-TTGCCAAAGGTGT-TAA-TTTATTAGTAGCTACCCCTG 820
Query 805 GTCGTCTTCTTGACCATCTTCAGAATACAAA-GGCTTT-CATTTATAAACACTTGAAG-T 861
| | ||||| ||||| ||| | |||||||| || ||| ||| | | | |||||||| |
Sbjct 821 GAAGGCTTCTCGACCACCTTGAAAATACAAATGGTTTTGTATTCA-AGA-ACTTGAAGCT 878
Query 862 GCCTTGTGATCGATGAAGCTGATAGGATACTGGAAGAGAATTTTGAGGAAGACATGAATA 921
|||| || ||||| |||||||||||| ||||| |||| ||||| || ||| |||| |
Sbjct 879 -TTTTGTAATGGATGAGGCTGATAGGATATTGGAACAGAACTTTGAAGAGGACCTGAAGA 937
Query 922 AGATT-CTAAAGATTTTACCAAAGACTAGGCAAACTG-CGTTATTCTCTGCCACCCAGAC 979
||||| |||| || ||||||||||||| || || | | | || || ||||| ||||
Sbjct 938 AGATTATTAAA-CTTCTACCAAAGACTAGACAGAC-GTCACTGTTTTCCGCCACACAGAG 995
Query 980 CTCTAAGGTTAAAGATCTTGCTCGGGTGTCA-TTGACATCACCTGTTCATGTGGATGTCG 1038
| | |||||| | |||||||||||||||||| ||| | ||||||||| || | ||||| |
Sbjct 996 CGCAAAGGTTGAGGATCTTGCTCGGGTGTCACTTG-CCTCACCTGTTTATATCGATGTGG 1054
Query 1039 ATGATGGCA-GACGCAAGGTGACAAATGAAGGATTGGAGCAAGGCTATTGTGTTGTTCC- 1096
|||| || | || ||||| ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 1055 ATGAAGG-ACGAAAAAAGGTTACAAATGAAGGCTTGGAGCAAGGTTATTGCGTTGTGCCA 1113
Query 1097 -G-AGCAAACAAAGACTTATCCTTCTAATTTCCTTTTTGAAAAAGA-ACC-T---AAATA 1149
| | | | | |||| || || || |||| ||| || ||| || | ||| |
Sbjct 1114 AGTGGGATGCGGTTA-TTAT--TTTTACTTACCTTCTTG-AAGAGATTCCATGGGAAA-A 1168
Query 1150 A-AAAGATTATGGTATTTTTCTCGACTTGCAAGTCGGTAC-AA-TTCCATACGGAAATCA 1206
| ||| || ||||| |||||||| || ||||| || | || || ||||| | ||| ||
Sbjct 1169 AGAAA-ATCATGGTGTTTTTCTCTACATGCAAATC-G-ACAAAGTTCCACGCCGAACTC- 1224
Query 1207 TGAAAATA-AGCGACGTGGA-TGTCTCTGATATTCATGGAGGCATGGATCAGAACAGAAG 1264
| ||| | | | | || || || ||| || | |||||| || || |||| || |||
Sbjct 1225 TTTCGATATATCAAATTAGATTGCCT-TGAAATCCGTGGAGGGATAGACCAGAGCAAAAG 1283
Query 1265 AACTAAAACCTTTTTCGACTTCATGAAAGCAAAGAAA--GGTATCTTGTTATGTACTGAT 1322
|||| ||| || ||| | ||||| || || |||| ||||| ||||| |||||| ||
Sbjct 1284 AACTTCAACATTATTCCAATTCATCAAGGC--GGAAACCGGTATTTTGTTGTGTACTAAT 1341
Query 1323 GTTGCTGCTCGTGGTCTCGATATTCCTTC-CGTGGACTGGATTATACAGTATGATCCACC 1381
|||||||| || ||||| ||| |||| || |||||||||||| | || |||||||| ||
Sbjct 1342 GTTGCTGCCCGAGGTCTTGATTTTCC-TCATGTGGACTGGATTGTGCAATATGATCCTCC 1400
Query 1382 AGACAAGCCAACGGAATATATCCATAGGGTTGGTCGAACAGCCCGTGGAGAAGGAGCAAA 1441
||| || |||||||||||||| ||||| |||||| ||||||| |||||||||||||||||
Sbjct 1401 AGATAACCCAACGGAATATATTCATAGAGTTGGTAGAACAGCTCGTGGAGAAGGAGCAAA 1460
Query 1442 GGGAAAGGCAT-TACTTGT-CTTGATTCCTGAAGAACTT-CAGTTTATTC-GCTACCTGA 1497
|||||||| | | ||||| ||| | ||| || | | || |||||||||| | || || |
Sbjct 1461 AGGAAAGGC-TCTGCTTGTCCTT-ACTCCAGATG-AGTTACAGTTTATTCAG-TATCTCA 1516
Query 1498 AGGCTGCGAAAGTACCTGTTAAAGAGCTTGAGTTCAATG-AGAAGAGG--CTTAG-T-AA 1552
|||| |||||| | |||||| | || | ||| || || ||||| || || | | |
Sbjct 1517 AGGCGGCGAAAATTCCTGTTGAGGAACATGAATT---TGAAGAAG-GGAAATT-GCTCGA 1571
Query 1553 TGTTCAATCTGCGCTGGAGAAATGTG-T-TGCCAAGGACTA--CAATCTGAACAAGTTAG 1608
|| ||||| |||||| || || | | | || |||| | || | ||| ||| ||
Sbjct 1572 CGTGAAATCTTTTCTGGAG-GATTTGATAT-CTAAAAACTATGC-AT-TAAACGAGTCAG 1627
Query 1609 CCAAAGATGCGTACAGGGCTTATC-TCTCAGCATACAATTCACACTCTTTGAAAGACATC 1667
| ||||| || |||| | |||| | | |||| ||| |||| |||||| |||||||||||
Sbjct 1628 CAAAAGAAGCATACAAGACTTA-CATTTCAGGATATGATTCTCACTCTATGAAAGACATC 1686
Query 1668 TTTAATGTTCACCGACTTGACCTCCTGGCTGTTGCTGAATCGTTCTGCTTCTC 1720
||||||||||||||||| || |||| || ||||| | |||||| | |||||
Sbjct 1687 TTTAATGTTCACCGACTCGATCTCCAGGAGGTTGCGGCTTCGTTCGGTTTCTC 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75418685100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5