BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18610.1
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479366 jgi|Araly1|479366|fgenesh2_kg.3__2067__AT3G18610.1 1784 0.0
> Ahg479366 jgi|Araly1|479366|fgenesh2_kg.3__2067__AT3G18610.1
Length=1856
Score = 1784 bits (966), Expect = 0.0
Identities = 1255/1386 (91%), Gaps = 54/1386 (4%)
Strand=Plus/Plus
Query 715 GATGAATCTTCTTCAGATGAGGAAAC--CCCCGTTGTGAAGAAG-AAGCCAACAACAGTT 771
||||| ||||||||||| |||||| | |||| || ||||||| || || | |||
Sbjct 502 GATGATTCTTCTTCAGACGAGGAATCTGCCCC--TGCGAAGAAGCAA-CC--C-GCAGCC 555
Query 772 GTTAAGGATGCCAAGGCAGAAAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGATGAA 831
||||| || |||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 556 CTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615
Query 832 C-CAACACCTGCCAAGAAGCCAACAGTTGTTAAGAATGCT-AAACCAGCTGCAAAAGATT 889
| | |||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 616 CTC-ACACCTGCCATTAAGCCAACAGTTGTTAAGAAT-ATCAAACCAGCTGCAAAAGATT 673
Query 890 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACGA 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 674 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACAA 733
Query 950 AGAAGGCTAAAGTTTCAT---CAAAAACTTCTAAACAAGAAAGCTCTAGTGATGAATCTA 1006
|||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||
Sbjct 734 AGAAGGCTAAAGTTTCATTAACAAAAACATCTAAAAAAGAAAGCTCTAGTGAGGAATCTA 793
Query 1007 GTGATGAATCTGATAAGGAGGAGAGTAAAGATGAGAAAGTGACACCAAAGAAAAAGGATT 1066
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 794 GTGATGAATCTGATAAGGAGGAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGACT 853
Query 1067 CTGATGTTGAAATGGTGGATGCAGAGCAGAAATCTAATGCAAAGCAGCCGAAGACACC-T 1125
||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 854 CTGATATTGAAATGGTGGATGCAGAGCAGAAATCAAATGCAAAGCAGCCAAAGACACCAT 913
Query 1126 ACTAATCAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTATCAAATT 1185
||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 914 -CTACTGAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAAATT 972
Query 1186 GCGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTCGATGTTAGACTT 1245
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 973 GAGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTT 1032
Query 1246 TCTTCATTTGATGATGGGAGTTTTAAGGGATATGGGCATATTGAATTTGCTTCTCCAGAA 1305
||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1033 TCTTCATATGATGATGGGACATTTAAGGGATATGGGCATGTTGAATTTGCTTCTCCAGAA 1092
Query 1306 GAAGCTCAGAAGGCATTGGAAATGAACGGTAAATTGTTACTAGGCCGCGATGTTCGTCTT 1365
||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||
Sbjct 1093 GAAGCTCAGAAGGCATTGGAACTGAACGGTAAAATGTTACTAGGGCGCGATGTTCGGCTT 1152
Query 1366 GATCTTGCTAACGAGAGGGGTACTCCACGAAACAGCAATCCTGGTCGCAAAGGAGAAGGA 1425
||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1153 GATCTTGCTAACGAGAGGGGT-CA--ACGAAACAGCAATTCTGGTCGCAAAGGAGAAGGA 1209
Query 1426 AGCCAAAGTCGAACGATTTACGTTAGAGGATTCAGTTCTTCTCTTGGCGAAGATGAAATC 1485
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1210 AGCCAAAGTCGAACGATTTTTGTTAGAGGATTCAATTCTTCTCTTGGCGAAGATGAAATC 1269
Query 1486 AAGAAAGAGTTGAGAAGTCATTTTAGCAAGTGTGGAGAGGTGACAAGGGTTCATGTTCCA 1545
||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||
Sbjct 1270 AAGAAAGAGTTGAGAAGTCTTTTTAGTAACTGCGGAGAGGTGACAAGGGTTCATGTTCCA 1329
Query 1546 ACAGATCGTGAGACTGGTGCTTCCAGGGGCTTTGCTTACATAGATTTGACGAGTGGATTC 1605
|||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||
Sbjct 1330 ACAGATCGTGAGACTGGTGCTTGCAGGGGGTTGGCTTACATAGATTTGACGAATGGATTC 1389
Query 1606 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGAGGGAACATACATGTGGAAGAG 1665
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1390 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGATGGAACATACATGTGGAAGAG 1449
Query 1666 TCTAGACCAAGAGATAGTGATGAGGGCCGTTCCTCAAACAGAGCACCTGCTAGAGGAGCA 1725
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 1450 TCTAGACCAAGAGATAGTGATGAGGGGCGTTCCTCAAACAGAGCACCTGGTAGAG---CA 1506
Query 1726 CCTCGTGGCCGTCACTCAGATAGAG---CACCTCGTGGAGGACGTTTCTCGGATAGAG-- 1780
|||||||| ||| |||| ||||||| |||||||||| |||||||| |||||||
Sbjct 1507 CCTCGTGGACGTTACTCGGATAGAGGAGCACCTCGTGGC---CGTTTCTCAGATAGAGGA 1563
Query 1781 -CACCACGTGGACGTCACTCAGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1839
|||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GCACCTCGTGGCCGTTTCTCGGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1623
Query 1840 AGAGGACCCAGCAAACCAAGTGTAATGGAATCATC-CAAAGGGACGAAGACGGTCTTTAA 1898
|||||||||||||||||||||||||| |||||| | | | |||| |||||||||||||||
Sbjct 1624 AGAGGACCCAGCAAACCAAGTGTAATTGAATCAGCTCTA-GGGAAGAAGACGGTCTTTAA 1682
Query 1899 TGATGAAGAGTAGAAGAAAGCTGTTTTT----GGTTCTATCTTATAGTAGTAGAGCGTTT 1954
|||||||| |||||||| ||| ||||| |||||||||||||||||| | |||
Sbjct 1683 AGATGAAGACTAGAAGAA-GCTTTTTTTTTTTGGTTCTATCTTATAGTAG-----CTTTT 1736
Query 1955 TTGGCCTAGTTTCTTTTGTTTTCTGTTGAGAAAAGCATTAAGCTTTATACTCTTCTTAAG 2014
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1737 TTGGCCTAGTTTCTTTTGTTTTCTATTGAGAAAAGCATTAAGCTTTATACTCTTCTCAAG 1796
Query 2015 ATTCTTTT-TGTTGGTTTTT--CTTAAAACTTATTAAGAGCACTTTACTTTGCTGCTCAA 2071
|| |||| ||||||||||| |||||| |||| | |||||||||||||||||||||||
Sbjct 1797 ATA-TTTTGTGTTGGTTTTTTTCTTAAA-CTTA--A-GAGCACTTTACTTTGCTGCTCAA 1851
Query 2072 AATTTT 2077
| ||||
Sbjct 1852 A-TTTT 1856
Score = 501 bits (271), Expect = 8e-141
Identities = 518/626 (83%), Gaps = 61/626 (10%)
Strand=Plus/Plus
Query 1 ATGGGCAAGTCTAGTAAGAAATCCGTCACCGAAGTTGAAACACCTGCTTCAATGACAAAG 60
|||||||||||||| || ||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 1 ATGGGCAAGTCTAGCAAAAAATCCGCCACCAAAGTTGAATCACCTGCTTCAATGACAAAG 60
Query 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAAGAGGATTTGGACATGCAAGTTACGAAGAAG 120
|||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAACAGGATTTGGACATCCAAGTTCCGAAGAAG 120
Query 121 CAGAAGAAAGAGTTGATTGATGTTGTTCAGAAGGAGAAAGCTGAGAAAACGGTACCTAAG 180
|||||||||||||||||||||| |||||||||||||| | |||||||||| ||||| |||
Sbjct 121 CAGAAGAAAGAGTTGATTGATGCTGTTCAGAAGGAGATATCTGAGAAAACCGTACCGAAG 180
Query 181 AAGGTAGAGAGTAGCAGTTCTGAC------GCTTCT---GATTCTGA---TGA--AGAGG 226
|||||||||||||||||||||||| |||||| |||||||| ||| ||| |
Sbjct 181 AAGGTAGAGAGTAGCAGTTCTGACTCATCAGCTTCTTCTGATTCTGAGGATGATCAGAAG 240
Query 227 AG-AAGA----C-T---AA-GGAAACTCCATCTAAGTTGAAGGATGAGTCTTCTTCTGAA 276
| |||| | | || |||| |||| |||||| ||||| ||| |||||||||||
Sbjct 241 ACTAAGAAAGTCCTTGCAAAGGAACCTCCTTCTAAGCAGAAGGGTGACTCTTCTTCTGA- 299
Query 277 GAGGAGGATGACTCTTCTTCAGATGAGGAAATTGCGCCTGCGAAGAAGCGACCAGAACCT 336
|||||||||||| ||||||||| |||||||| |||||||| ||||||||||
Sbjct 300 --------TGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAGAACCT 351
Query 337 ATTAAGAAGG-CTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTACTTCAGACGAGGA 395
|| ||||| | | |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 352 ATCAAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGA 410
Query 396 AACTGCCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A- 440
||||||||||||||||||||||||||||| ||||||||||| | | || |
Sbjct 411 AACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAA 470
Query 441 G---G------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGT 491
| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 GAAAGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGC 530
Query 492 CCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCTAA-GATAGAGAGCAGCTCATCTG 550
||||| |||||||||||| |||| |||| |||| | || | ||| ||||| ||||| |
Sbjct 531 CCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAAAGC-AGATAGCAGTTCATCAG 589
Query 551 ATGATGATTCTTCTTCAGACGAGGAA 576
| || || |||||||| |||||||||
Sbjct 590 AGGAGGAATCTTCTTCGGACGAGGAA 615
Score = 257 bits (139), Expect = 2e-67
Identities = 294/362 (81%), Gaps = 37/362 (10%)
Strand=Plus/Plus
Query 372 TGATGATTCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCT-T- 429
|||||| ||| |||| || |||||| |||| ||||||||||||||||||| | ||| |
Sbjct 297 TGATGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAG-A-ACCTATC 354
Query 430 GAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 488
|| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 413
Query 489 TGTCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A-GA- 532
|| ||||||||||||||||||||||| ||||||||||| | | || | ||
Sbjct 414 TGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAAGAA 473
Query 533 --------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGTCCC 584
|||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 474 AGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGCCCC 533
Query 585 TATGAAGAAGCAAACAGCAGTCCTTGAGAAGGCTAAGGCAGAGAGCAGTTCATCCGACGA 644
| |||||||||| | |||| |||| |||| | || ||||| ||||||||||| || ||
Sbjct 534 TGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGA 593
Query 645 TGGA-TCTTCTTCGGACGAGGAACCCACCCCTGCAAAGAAAGAACCAATC-GTTGTTAAG 702
||| ||||||||||||||||||| ||| ||||| | || | |||| | |||||||||
Sbjct 594 -GGAATCTTCTTCGGACGAGGAACTCACACCTGCCATTAA-G--CCAA-CAGTTGTTAAG 648
Query 703 AA 704
||
Sbjct 649 AA 650
Score = 187 bits (101), Expect = 3e-46
Identities = 146/168 (87%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 320 AGAAGCGACCAGAACCTATTAAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGAT 378
|||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 449 AGAAGCAACCAGAACCTATTAAGAAAGAC-AAGGTAGAGAGCAGCTCATCTGATGATGAT 507
Query 379 TCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCT 438
||| |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| |
Sbjct 508 TCTTCTTCAGACGAGGAATCTGCCCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACC 567
Query 439 AAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 486
|| | ||| ||||| ||||| || || || |||||||| |||||||||
Sbjct 568 AAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615
Score = 165 bits (89), Expect = 1e-39
Identities = 140/162 (86%), Gaps = 13/162 (8%)
Strand=Plus/Plus
Query 462 TGATGATTCTTCTTCAGACGAGGAAACTGTC-CCTGTGAAGAAGCAACCAGCAGTCCT-T 519
|||||| |||||||| || |||||| ||| | ||||||||||||||||||| | ||| |
Sbjct 297 TGATGACTCTTCTTCGGATGAGGAACCTG-CGCCTGTGAAGAAGCAACCAG-A-ACCTAT 353
Query 520 -GAG-AAGGCTAA-GATAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 576
|| ||| | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CAAGAAAGAC-AAGGA-AGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 411
Query 577 ACTGTCCCTATGAAGAAGCAA--A-CAGCAGTCCTTGAGAAG 615
|||| |||| ||||||||||| | |||||||||||||||||
Sbjct 412 ACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAG 453
Score = 91.6 bits (49), Expect = 2e-17
Identities = 74/85 (87%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 1746 TAGAGCACCTCGTGGAGGACGTTTCTCGGAT--A-GAGCACCACGTGGACGTCACTCAGA 1802
||||||||||||| ||||||| ||||||| | ||||||| ||||| ||| ||||||
Sbjct 1500 TAGAGCACCTCGT---GGACGTTACTCGGATAGAGGAGCACCTCGTGGCCGTTTCTCAGA 1556
Query 1803 TAGAGGAGCACCTCGTGGCCGTTTC 1827
|||||||||||||||||||||||||
Sbjct 1557 TAGAGGAGCACCTCGTGGCCGTTTC 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78922987640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5