BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18620.1
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479367 jgi|Araly1|479367|fgenesh2_kg.3__2068__AT3G18620.1 2771 0.0
> Ahg479367 jgi|Araly1|479367|fgenesh2_kg.3__2068__AT3G18620.1
Length=1822
Score = 2771 bits (1500), Expect = 0.0
Identities = 1740/1851 (94%), Gaps = 36/1851 (2%)
Strand=Plus/Plus
Query 1 GATCAAAATTTGCCGGTGTTTACTGTTGCAATAGCCGTCGCCACTCGCCAACGGTGGGGT 60
|||||||||||||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct 1 GATCAAAATTTGCCGGTGTTTACTGTTGCAATCGCCGTCG----T---CAACGGT-GGGT 52
Query 61 ATCGGTAGATTGATTTCTAAAATTAGAGGGA-GAAATAGAGGAGGCTCTCATTTTATTTC 119
||||||||||||||| || ||||||||||| ||| |||||| | ||| | | || ||
Sbjct 53 TTCGGTAGATTGATTTATAGAATTAGAGGGATAAAAGAGAGGA-GATCTGA-TGCATATC 110
Query 120 -GTGAATGTTAAAGACGGTCAACGCAAAATCACTTGTGAAGAATCTGATGCTTTGTGTCG 178
|||||| ||||||||||||||||| |||| |||||||||||||| ||||| || ||| |
Sbjct 111 TGTGAATATTAAAGACGGTCAACGC-AAATTACTTGTGAAGAATCGGATGC-TT-TGT-G 166
Query 179 TCGTGGTCAAGCAATTTCAGATTGATCCGAAAACAATCTGTCAGATCTTTGTGTAAAGAG 238
|||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 167 TCGTGGTCAAGCTATTTCGGATTAATCCGACAACAATCTGTCAGATCTTTGTGTAAAGAT 226
Query 239 AGTAGCTTTGAGGGAGCTGATAGTTCTGTTCGTTGCCCATGATTAGAGATTTAGTATATT 298
|||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 227 AGTAGCTTTGAGGGAGCTGATAGTTCTGTTCGGTGCCCAAGATTAGAGATTTCGTATATT 286
Query 299 CTCACGGATGATTCAGCGAGACCTGTTTCATCGATTAGCAGATGAATGGATGGGGTTTCT 358
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 287 CTCACGGATGATTCAGCGAGACGTGTTTCATCGATTAGCAGATG-ATTGATGGGGTTTCT 345
Query 359 TCTGAAATTGACACGTAGTCCATTGTTTTAGGATATTCAAAGCTAGAGGAAAACAAGTTT 418
|||| |||||| ||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 346 TCTGCAATTGATACGTATTCTATTGGTTTAGGATATTCAAAGCTAGAGGAAAACAAGTTT 405
Query 419 TTGGTTGATTCTTTTGATTTCATTACaaaaaaaaaGAGCTTTTTGGTTTTCTTTGAGTTG 478
||||||||||| |||||||||||| ||| ||| |||||||||| ||||||||||||||||
Sbjct 406 TTGGTTGATTCGTTTGATTTCATTTCAATAAAGAAGAGCTTTTGGGTTTTCTTTGAGTTG 465
Query 479 GTGATTGTTAACTCTCATCAAATCTTCTGAAGAAACCTTTCT--TGTAACC-AG-CTATG 534
||||||||||||| ||||| ||||||||| | | ||||| | |||| | ||||
Sbjct 466 GTGATTGTTAACTTTCATC-AATCTTCTG--G-GA--TTTCTGAAGAAACCTTGTTTATG 519
Query 535 GAAGATTCTTCCCAGGGGAGTTTTGTTGCAACCATAAATGAGGATTATGAAGCAATTTGT 594
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 520 GAAGAGTCTTCCCAGGGGAGTTTTGTTACAACCATAAATGAGGATTATGAAGCAATTTGT 579
Query 595 TGGGGCTGTGGGCTAAACCTTGTTCTTCCATCATATGCACCTGTTTTTAAGTGTGGATGG 654
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 580 TGGGGCTGTGGGCTAAACCTTGTTCTTCCATCATATGCACCTGTTTTCAAGTGTGGATGG 639
Query 655 TGTGGTGCAATCACGAATCAGAATCCAGTCAGACCTGAAACCAAAAGCTTTGGGTTGAGA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTGGTGCAATCACGAATCAGAATCCAGTCAGACCTGAAACCAAAAGCTTTGGGTTGAGA 699
Query 715 CGTTTCCGTGACCGGTGTTTTGTCGTTATTCTTGCAGTTTTTATGCTCTTTGTGATATGT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CGTTTCCGTGACCGGTGTTTTGTCGTTATTCTTGCAGTTTTTATGCTCTTTGTGATATGT 759
Query 775 GGTGGGATTTGGGCTGCATATCCCGTCTTGTTTTCGATCAGCTTGGCTTGCGGAATTTTC 834
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 760 GGTGGGATTTGGGCTGCGTATCCCGTCTTGTTCTCGATCAGCTTGGCTTGTGGAATTTTC 819
Query 835 CATTCTGTTACAACAGCGACTCTGGCGATATCAACGCTCTCAACATTTATTCTCGTTGCT 894
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 820 CATTCTGTTACAACAGCGTGTCTGGCGATATCAACGCTCTCAACATTTATTCTTGTTGCT 879
Query 895 TTTAAATGTGCCGGGAAGCCAACAAATATTCTTTATGGAACCCACCCTGGAGTAGGGAAT 954
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TTTAAATGCGCCGGGAAGCCAACAAATATTCTTTATGGAACCCACCCTGGAGTAGGGAAT 939
Query 955 GGTGCACTTAACAACTATACCTTTTGTAACTACTGCTCCAAACCCAAGTCACCTAGAACC 1014
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 940 GGCGCACTTAACAACTATACCTTTTGTAACTACTGCTCCAAACCCAAGTCTCCTAGAACC 999
Query 1015 CATCACTGCCGCACGTGTGGCATGTGTGTATTGGACATGGATCACCATTGCCCCTTTATT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CATCACTGCCGCACGTGTGGCATGTGTGTATTGGACATGGATCACCATTGCCCCTTTATT 1059
Query 1075 GGGAACTGTGTTGGTGCGGGTAATCACAAATACTTCATAGCATTCCTTATCTCAGCCGTC 1134
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 1060 GGGAACTGTGTTGGTGCGGGTAATCACAAACATTTCATAGCATTCCTTATCTCAGCAGTC 1119
Query 1135 ATTAGCACAAGCTATGCTGCTGTTATGTGTGTGTATACCTTGATTCATATCTTGCCACCT 1194
| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1120 ACTAGCACAATCTATGCTGCTGTTATGTGTGTGTATTCCTTGATTCATATCTTGCCACCT 1179
Query 1195 ATTGAAAAAGGAGCTGCATATGCATCCGATGTGGCCCATGTGGCGCATGGTAATAGTATA 1254
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1180 ATGGAAAATGGAGCTGCATATGCATCCGATGTGGCCCATGTGGCGCATGGTAATAGTTTA 1239
Query 1255 TCGATTCTGAGAGTGGTGAAGAATATATGTCTTACTTACATAGCCAACGCTGTCTTCATC 1314
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1240 TCGATTCTGAGAGTGGTGAAGAATATATTTCTTACTTACATAGCCAACGCTGTCTTCATC 1299
Query 1315 TCTGTTCGAAGCCTTGTTCTAGTCTATCTCTTTGTGGCGAGTGTTTCTGTGGCGATTGGG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TCTGTTCGAAGCCTTGTTCTAGTCTATCTCTTTGTGGCGAGTGTTTCTGTGGCGATTGGG 1359
Query 1375 CTAAGTGTTTTGCTGTGGCAACAGCTTAGCTATATCTATGAAGGCAAGACTTACTTGAGC 1434
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1360 CTAAGTGTTTTGCTGTGGCAACAGCTTAGCTATATCTATGAAGGCAAGACGTACTTAAGC 1419
Query 1435 CATTTGAGTTCTCAAGGAACAGAAGAAGATGGTGAAAAAAGCTGCCGGAATCTTTTGACT 1494
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1420 CATTTAAGTTCTCAAGGAACAGAAGAAGATGGTGAAAAGAGCTGCAGGAATCTTTTGACT 1479
Query 1495 TTTTTCGGGTGTCCACATTCAATTGAAAGGCACTTGCCAACCATAAGGAACTTGAGgaag 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TTTTTCGGGTGTCCACATTCAATTGAAAGGCACTTGCCAACCATAAGGAACTTGAGGAAG 1539
Query 1555 agacataagacatgagaagaagaagaagagaagaaTGTGAGCCAAGTATGtttttttCTG 1614
||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 1540 AGACATAAGACATGAGAAGAAGAAGAATAGAA---TGTGAGCCAAATATGTTTTTTTCTG 1596
Query 1615 TTTCCTCCTACACTTGG-AGCTTGTTGTGGTCAATTCAGAAACATTCATCATACAGTACT 1673
||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1597 TTTCCTCCTACGTTTGGGAGCTTGTTGTGGTCAATTCAGAAACATTCATCATAC--T--T 1652
Query 1674 TGGAGCTAACAGGTAATGCAGATTAGCAAAGTTTGTACCTCATTTGTGAAAATTCATGAT 1733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 -GGAGCTAACAGGTAATGCAGATTAGCAAAGTTTGTACCTCATTTGTGAAAATTCATGAT 1711
Query 1734 CATAGAATATAGGAGCAACTGCTCCTGTAAATTTTGCTTAAAGATTGTAAATTTGTTGTT 1793
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1712 CATAGAATATAGGAGCAACTGCTCCTGTAAATTTTGTTTCAAGATTGTAAATTTGTTGTT 1771
Query 1794 TCCCTGACATGCCTTTGAACTCAAGGATAACATTATCAAAGGCGTTCCATA 1844
||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1772 TCCCTGACATGCCTTTGAACTCAAGAATAACATTATCAAAGGGGTTCCATA 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5