BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18630.1
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479368 jgi|Araly1|479368|fgenesh2_kg.3__2069__AT3G18630.1 1888 0.0
> Ahg479368 jgi|Araly1|479368|fgenesh2_kg.3__2069__AT3G18630.1
Length=1280
Score = 1888 bits (1022), Expect = 0.0
Identities = 1177/1252 (94%), Gaps = 9/1252 (1%)
Strand=Plus/Plus
Query 67 ATGGCTTCGTCGACACCTAAAACCCTAATGGAtttttttCAACCTGCCAAACGCCTCAAA 126
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCGT---CATCTAAAACCCTAATGGATTTTTTTCAACCTGCCAAACGCCTCAAA 57
Query 127 GCTTCCCCTTCTTCCTCCTCTTTCCCTGCCGTCTCCGTCGCCGGTGGTTCCCGTGATTTG 186
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 58 GCTTCCCCTTCTTCCTCCTCTTTCCCCGCCGTCTCCGTCGCCGGAGGATCCCGTGGTTTG 117
Query 187 GGTTCTGTAGCAAACTCGCCGCCTCGTGTAACCGTTACCACTTCCGTCGCCGATGATTCG 246
| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 118 GTTTCTGCAGCAAACTCGCCGCCTCGTGTAACCGTAACCACTTCCGTCGCCGATGACTCA 177
Query 247 TCTGGCCTTACACCTGAACAGATCGCTCGCGCAGAGTTCAACAAGTTCGTCGCCAAGTCC 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 TCTGGCCTTACACCTGAACAGATCGCTCGCGCAGAGTTCAACAAGTTCGTCGCCAAATCC 237
Query 307 AAGCGTAACCTCGCCGTCTGCTCCGAGAGGGTCACAAAAGCAAAATCTGAAGGAAACTGC 366
|||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||
Sbjct 238 AAGCGTAACCTCGCCGTCTGCTCCGAGAAGGTCACAAAAGCGAAAGCTGAAGGAGGCTGC 297
Query 367 TACGTACCATTGAGTGAGCTCTTAGTAGAAGAATCATGGCTTAAAGCTCTTCCTGGGGAA 426
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 298 TACGTGCCATTGAGTGAGCTCTTAGTGGAAGAATCGTGGCTTAAAGCTCTTCCTGGGGAA 357
Query 427 TTTCATAAACCCTACGCCAAATCACTTTCTGATTTCCTTGAACGTGAGATCATCACTGAC 486
|| |||||||| ||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 358 TTGCATAAACCTTACGCCAAAACCCTTTCTGATTTCCTTGAACGTGAGATCATCGCTGAC 417
Query 487 AGTAAAAGCCCTCTGATTTATCCACCGCAGCACTTGATTTTCAATGCTCTTAATACAACT 546
||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 418 AGTAAAAGCCCTCCGATTTATCCACCGCAACACTTGATTTTCAATGCCCTTAATACAACT 477
Query 547 CCTTTTGATCGAGTTAAGACTGTCATTATCGGACAGGATCCTTATCATGGACCTGGTCAA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCTTTTGATCGAGTTAAGACTGTCATTATCGGACAGGATCCTTATCATGGACCTGGTCAA 537
Query 607 GCTATGGGTTTGTCCTTCTCTGTACCTGAAGGAGAAAAGCTTCCTTCTAGTCTGTTGAAC 666
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 538 GCTATGGGTTTGTCCTTCTCTGTGCCTGAAGGAGAAAAGCTTCCTTCTAGTCTATTGAAC 597
Query 667 ATCTTTAAGGAGCTTCATAAAGATGTTGGCTGTTCCATCCCACGTCACGGTAATCTACAG 726
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 ATATTTAAGGAGCTTCACAAAGATGTTGGCTGTTCTATCCCACGTCACGGTAATCTACAG 657
Query 727 AAATGGGCTGTGCAGGGTGTGTTACTCCTGAATGCTGTTCTTACAGTAAGGAGTAAACAG 786
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 658 AAATGGGCTGTGCAGGGTGTCTTGCTGCTGAATGCTGTTCTTACAGTAAGGAGTAAACAG 717
Query 787 CCTAATTCACATGCAAAGAAAGGATGGGAACAATTCACTGATGCTGTTATTCAAAGTATC 846
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 718 CCTAATTCACATGCAAAGAAAGGATGGGAACAATTCACTGATGCTGTTATCCAAAGCATC 777
Query 847 TCACAGCAGAAGGAAGGTGTTGTTTTTCTTCTCTGGGGAAGATACGCTCAAGAGAAATCC 906
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 778 TCACAGCAGAAGGAAGGTGTTGTTTTTCTCCTCTGGGGAAGATACGCTCAAGAAAAATCC 837
Query 907 AAGTTGATAGATGCGACTAAACATCATATACTCACAGCAGCTCATCCATCTGGTTTGTCG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGTTGATAGATGCGACTAAACATCATATACTCACAGCAGCTCATCCATCTGGTTTGTCG 897
Query 967 GCGAATAGAGGCTTCTTCGACTGCAGGCATTTCTCTCGCGCAAACCAGCTACTCGAGGAA 1026
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 898 GCGAATAGAGGCTTCTTTAACTGCAGGCATTTCTCTCGCGCAAACCAGCTTCTCGAGCAA 957
Query 1027 ATGGGGATTCCTCCCATAGACTGGCAACTTTAACTTGTTAACCGTAGTCTTAAGGCCAAG 1086
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 ATGGGGATTCCTCCCATAGACTGGCAACTTTAACTTGTTAACCGTAGTCTCAAGGCCAAG 1017
Query 1087 GCGAAGTGTGATTCATCTCGGGAAGCCTTGTGTTTTTTGCAGTCCTTTTTGGTGAAGAGA 1146
||||||||||| |||| |||||| | ||||||||||||||||||||||||||| |
Sbjct 1018 AAGAAGTGTGATTTTTCTCCT-AAGCCTAGCGTTTTTTGCAGTCCTTTTTGGTGAAGAAA 1076
Query 1147 GTTTGAAGTTCTTAATAGTTCTAATGTCCCTTTTTT-GTGAAATATGTTATCACGGAACC 1205
||||||||||||||| |||| ||||| ||||||||| ||||| | ||||||||||||| |
Sbjct 1077 GTTTGAAGTTCTTAACAGTTGTAATG-CCCTTTTTTTGTGAACTGTGTTATCACGGAAAC 1135
Query 1206 CTAGCATAAGCTGTTGAAGTAGTTGGATCTGAGTATGGCTCAGTAGTGGCAAACTGTCT- 1264
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1136 CTAGCATAGGCTGTTGAAGTAGTTGGATCTGAGTATGGCTCAGTAGTGGCAAACTGTGTC 1195
Query 1265 TT-ATGTTGTAGTTTTGAAGAGTGGTGGTGTATTATATTTTGTATGGAAAGT 1315
|| || |||||||||| |||| ||||||||||| |||| |||||||||||
Sbjct 1196 TTCATTTTGTAGTTTTCAAGAACAGTGGTGTATTAAATTT-GTATGGAAAGT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53326343000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5