BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18640.1
Length=2517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929746 jgi|Araly1|929746|scaffold_302203.1 2074 0.0
> Ahg929746 jgi|Araly1|929746|scaffold_302203.1
Length=2098
Score = 2074 bits (1123), Expect = 0.0
Identities = 1402/1527 (92%), Gaps = 58/1527 (4%)
Strand=Plus/Plus
Query 724 CGAGAATAAGAAGGCGA-AGAAGCGAGTTTACGGGAGAGAAGGAAACACAAAGAAGGGAT 782
||||||| ||||||| | |||||||| ||||||||||||||||| |||||||||| ||
Sbjct 601 CGAGAATGAGAAGGC-ACAGAAGCGAATTTACGGGAGAGAAGGACACACAAAGAA--GA- 656
Query 783 GGTGGTGATGGTGAAGGAGGATTCCACAGGAGTTCGAATATTCCGTGTAAGTTTTTCGCT 842
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 GGTGGTGATGGTGAAGGAGGATTCCACAGGAGTTCGAATATTCCGTGCAAGTTTTTCGCT 716
Query 843 GCGGGGACGGGGTTCTGTCGTAATGGCAAGTATTGCAGGTTTTCTCATCATGTTGCTGAT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCGGGGACGGGGTTCTGTCGTAATGGCAAGTATTGCAGGTTTTCTCATCATGTTGCTGAT 776
Query 903 AGAAAACAGCCTCAAGACAACAACAACAACTTTTATAGACAGGACAATAACAATCATACT 962
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 777 AGAAAACAGCCTCAAG------ACAACAACTTTTATAGACAGGACAATAACAATCATAGT 830
Query 963 AGTGGTCATAATAAATGGAATGATGTTGAAAGATTGGACAATGGAAGAGTAGGCGGAATC 1022
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 831 AGTGGTCATAATAAATGGAATGATTTTGAAAGATTGGACAATGGAAGAGTAGGTAGAATC 890
Query 1023 GAAGTTTCTCGTGCCAGTAAGAAGGGAGTTTCTGAATCTAAAGGGAATGGTAGTAGTAGC 1082
||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 891 GAAGTTTCTCGCGCCAGT---AAGGGAGTTTCTGAATCTAAAGGGAAT-G--GTAGTAGC 944
Query 1083 TGGATTGATGACATGGAGATGTCTCCTGATTGGAATTATGGAGTCCAAGCTTTAAAGAAG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TGGATTGATGACATGGAGATGTCTCCTGATTGGAATTATGGAGTCCAAGCTTTAAAGAAG 1004
Query 1143 CCTGTGAAGGAAGACCATAGTGTTGGTATTATTGGTCAGAGTTCACAATCTCGAGTTCTT 1202
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CCTGTGAAGGAAGAACATGGTGTTGGTATTATTGGTCAGAGTTCACAATCTCGAGTTCTT 1064
Query 1203 AAAGATGA-----T--C-----A-G---AG-G-AGTAGTGGTATGTTTTCACATGGTGGC 1244
|||||||| | | | | || | ||||||||||||||||||||||||| |
Sbjct 1065 AAAGATGATCTGGTGACTAATTATGATCAGAGAAGTAGTGGTATGTTTTCACATGGTGAC 1124
Query 1245 AGAACTATGGCTGAGAAACCTGTAGCTGCTTCACATCAGAGTTACAGTAATTCAGTGAAT 1304
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AAAACTATGGCTGAGAAACCTATAGCTGCTTCACATCAGAGTTACAGTAATTCAGTGAAT 1184
Query 1305 GTTGCGCCAGTTGAAACATTCAATCAGAATCATAATGCATTACCGTACCAAAGCTCACTA 1364
| ||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1185 GCTGCTCCAGTTCAAACATTCAATCAGAATCATAATGTATTGCCGTACCAAAGCTCACTA 1244
Query 1365 ACTGCTGGAGGAAGTCAACAAGTGCTAGCTGCTGCTGCTACAAATTTCTCAGTAGGCTCC 1424
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1245 ACTGCTGGAGGAAGTCAACAAGTGGTA---GCTGCTGCTACAAATTTCTCAGTAGGCTTG 1301
Query 1425 AACTTGAGCAATCTTGAGAGTGGAAAAGTTTATCAAGATAATCATCACTCAACTGTGGAG 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1302 AACTTGAGCAATCTTGAGAGTGGAAAAGTTTATCAAGATAATCATCACTCAACGGTGGAG 1361
Query 1485 AAACCTGTTTTGGTCCAAAATACAGTAAGTAGGGAACAAATCGATCAGATTACTAACATC 1544
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1362 AAACCTGTTTTGGTTCAAAATACAGTAAGCAGGGAACAAATCGATCAGATTACCAACATC 1421
Query 1545 TCAGCATCTCTAGCGCAGTTTCTTGCAAATGGTCAGCCCATTCCACAGCTTGAACAGGCA 1604
|||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1422 TCAGCAACTATAGCGCAGTTTCTTGCAAATGGGCAGCCTATTCCACAGCTTGAACAGGCA 1481
Query 1605 TTGCAGCTGCCTCTGCATTCAG-A------AT--CTGTTCAACCAAATCAGGCTACTACT 1655
|| ||| |||| |||||||||| | || ||||||| |||||||||| |||||
Sbjct 1482 TTACAGATGCCGCTGCATTCAGAATCTTCCATGGCTGTTCAGCCAAATCAGG---CTACT 1538
Query 1656 CAAAGTAATGTAGTGAGTAGTAATCCAAATCAGCT-ATGGGGATTAGGGATGAGCACTGG 1714
||||||||| |||||| ||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 1539 CAAAGTAATCCAGTGAGAAGTAATCCAAATCAG-TCATGGGGACTAGGGATGAGCACTGG 1597
Query 1715 CGCTGAAGGAGTCCCCGCGGTTACTGCATCAAAGATAAGCAATGTCGAAGAGATTCAAGA 1774
|||||||||||||| |||||||||||||||||| |||||||||||| | |||||| ||
Sbjct 1598 TGCTGAAGGAGTCCCAGCGGTTACTGCATCAAAGGTAAGCAATGTCGTTGGGATTCAGGA 1657
Query 1775 AGTATCGCTAGATCCCAAGGAAAACGGGGACAAAAAGACTGATGAAGCTAGCAAGGAAGA 1834
| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1658 ACTATCGCTAAATCCCAAGGAAAACAGGGACAAAAAGAATGATGAAGCTAGCAAGGAAGA 1717
Query 1835 AGAGGGTAAGAAAACTGGAGAAGACACTAATGATGCTGAGAATGTCGTGGATGAAGATGA 1894
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 AGAGGGTAGGAAAACTGGAGAAGACACTAATGATGCTGAGAATGTCGTGGATGAAGAT-- 1775
Query 1895 AGATGGTGATGATGATGGGAGCGACGAAGAGAACAAGAAAGAGAAAGACCCGAAAGGAAT 1954
|| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1776 -GA---TGATGATGATGGGAGCGACGAAGAAAACAAGAAAGGGAAAGACCCGAAAGGAAT 1831
Query 1955 GCGGGCGTTTAAGTTTGCTTTAGTTGAGGTTGTAAAAGAGCTTTTAAAACCAGCTTGGAA 2014
|||||| ||||||||||| |||||||||| ||||| |||||| ||||||||||||||||
Sbjct 1832 GCGGGCATTTAAGTTTGCACTAGTTGAGGTAGTAAAGGAGCTTCTAAAACCAGCTTGGAA 1891
Query 2015 AGAAGGTAAGCTGAACAAAGATGGTTACAAAAACATAGTGAAGAAGGTAGCTGAGAAAGT 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 AGAAGGTAAGCTGAACAAAGATGGTTACAAAAACATAGTGAAGAAGGTAGCTGAGAAAGT 1951
Query 2075 GACTGGTACAATGCAAAGTGGAAACGTTCCTCAAACACAGGAGAAGATTGACCATTATCT 2134
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1952 GACTGGTACAATGCAAAGTGAAAAGGTTCCTCAAACACAGGAGAAGATTGACCATTATCT 2011
Query 2135 ATCCGCTTCGAAACCAAAGCTTACCAAGCTCGTTCAGGCATATGTCGGCAAAATCAAGAA 2194
|||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||
Sbjct 2012 ATCCGCTTCGAAACCAAAACTTACCAAGCTCGTGCAGGCATATATCAGCAAAATCAAGAA 2071
Query 2195 GACCTAATATGAATTGTACTCCCATGT 2221
||| |||| ||||||| ||||||||||
Sbjct 2072 GACATAATTTGAATTGGACTCCCATGT 2098
Score = 830 bits (449), Expect = 0.0
Identities = 538/580 (93%), Gaps = 10/580 (2%)
Strand=Plus/Plus
Query 150 TTTGGTGCTTACTAGTTGGGGATGGAAATGAGTGGTCTGGGAAGAAAACGTGTTTCAAAG 209
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 TTTGGTGCTTACTAG-TGGGGATGGAAATGAGTGGTTTGGGAAGAAAACGTCTTTCAAAG 59
Query 210 TGGGACTCTAAGGAAGACACACACCATCATCATTCTAGCGTAAATGCAAACTCGGCTTCT 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 TGGGACTCTAAGGAAGACACACACCATCATCATTCTAGCGTAAATGCAAACTCGGGTTCT 119
Query 270 TATTACCGCGACAAAGAGTCTGAGCCTGTCCGGTTCAATGCAGAGAGTAACGGTGAAGCT 329
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 TATTACCGCAACAAAGAGTCTGAGCCTGTCCGGTTCAATGCAGAGAGTAATGGTGAAGCT 179
Query 330 AGGACTAGAAGCAGAGTTTCACAGAATAACGATAACAGTTATTTTTCTGAACAAGATGGT 389
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 AGGACTGGAAGCAGAGTTTCACAGAATAACGATAACAGTTATTTTTCTGAACAAGATGAT 239
Query 390 ACTAGGCAACAGTTTGTCCGTAGGAGTGGAAGTAGAAGTAATAGCAGGAGTAGAAGCCGT 449
|| |||||||| ||| ||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 240 ACAAGGCAACAATTTTTCCCTAGGAGTGCAAGTAAAAGTAATAGCAGGAGTAGAAGCCGT 299
Query 450 AGTAGAAGCCCAGTCTATAGAGCTAGACGAGACGCGGGATCTTATGACAGACACAAGACG 509
|||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||
Sbjct 300 AGTAGAAGCCCAGTCTATAGAGGTAGACGAGATGCGGGATCATATGATAGACACAAGACA 359
Query 510 AGAACACAAGTTTCTCCTACGCCAATCAGAGAATTCAATAAGAGAGGCAGTGATCATTTG 569
|||||||||||||||||||||||||| || || |||||||| ||||||||||||||| |
Sbjct 360 AGAACACAAGTTTCTCCTACGCCAATAAGGGAGTTCAATAAAAGAGGCAGTGATCATCAG 419
Query 570 TTTGATCAAAGCAGAAGTGATCATTATGGTTGGGAAGATAACATTAGAAAGCCGAGGGAG 629
||||||||||| | | ||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 420 TTTGATCAAAG-A-A-GTGAT--T-ATGGTTGGGAAGATAACATTAGAAAGCCAAGGGAG 473
Query 630 ACCAAATATCACACCGATGATTTCAGAGAAGAGGCAATGATGGAAGGTGCAAGGTCTTCT 689
|| || |||||||| || |||||||||||||||| |||||||||||||||| |||||||
Sbjct 474 ACGAAGTATCACACTGAAAATTTCAGAGAAGAGGCGATGATGGAAGGTGCAATGTCTTCT 533
Query 690 GACTATAATAATACTGATTATCCCGAGGATAATTCGAGAA 729
|||||||||| |||||||||||||||||||||||||||
Sbjct 534 GACTATAATA---CTGATTATCCCGAGGATAATTCGAGAA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94882800295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5