BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18650.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479371 jgi|Araly1|479371|fgenesh2_kg.3__2072__AT3G18650.1 1496 0.0
> Ahg479371 jgi|Araly1|479371|fgenesh2_kg.3__2072__AT3G18650.1
Length=1089
Score = 1496 bits (810), Expect = 0.0
Identities = 1001/1091 (92%), Gaps = 22/1091 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCGTCCTCTTCTCTTTCGTTTTCAACATCGAAGAAG-AACAAAACCTT 59
||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||| |
Sbjct 1 ATGGCTTCTTCTTCGTCCTCTTCTCTTTCGTCTTCATCATCGAAGAAGAAAAAAAACC-T 59
Query 60 TTTCAAGAAACCTAATTCTGCTTTTTCTTCTTCGAGGGCCACAAGTTTGATCAAAAGACA 119
||||||||||||||||||||||| |||||||||||| |||||||| || || ||||||||
Sbjct 60 TTTCAAGAAACCTAATTCTGCTTCTTCTTCTTCGAGAGCCACAAGCTTAATTAAAAGACA 119
Query 120 A-CAGACTGTCTTTAAGAAAGCTAAAGAGCTTTCAATTCTCTGTGACATCGATGTCTGCG 178
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 AGC-GACTGTCTTTAAGAAAGCTGAAGAGCTTTCAATTCTCTGTGACATCGATGTCTGCG 178
Query 179 TCATCTGTTAC-GGATCAAACGGAGAGCTTAAGACATGGCCTGAAGAGAGAGAGAAGGTC 237
||||||||||| | ||| ||||| |||| |||||||||||||| || ||||||||||||
Sbjct 179 TCATCTGTTACATG-TCAGACGGAAAGCTCAAGACATGGCCTGACGACAGAGAGAAGGTC 237
Query 238 AAAGCCATAGCTCGAAGGTACGGTGAATTAAGCGAGACGAAGCGTCGCAAAGGAAGCGTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGCCATAGCTCGAAGGTACGGTGAATTAAGCGAGACGAAGCGTCGCAAAGGAAGCGTT 297
Query 298 GATCTTCACGAGTTCCTCGAGAAGATGAACAAGGATGATCCCGAG-A--AGGAGGAGAAG 354
|||||||||||||||||||||| ||| || ||||||||| || || | |||||||||||
Sbjct 298 GATCTTCACGAGTTCCTCGAGAGGATCAATAAGGATGATTCCAAGGAGGAGGAGGAGAAG 357
Query 355 AAGAAGA---TTAAAGTGAGACGTGTACCCAAAGTCAAGTATCCAGTTTGGGACCCTAGG 411
||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 358 AAGAAGAAGATTAAAGTGAGACGTGTATCCAGAGTCAAGTATCCAGTTTGGGACCCTAGG 417
Query 412 TTTGACAATTACTCTGTGGAGCAACTCA-TGGGACTGGTTCAGTCCTTGGAACGAAACCT 470
||||| |||||||||||||||||||||| |||| || |||||||||||||| ||||||||
Sbjct 418 TTTGATAATTACTCTGTGGAGCAACTCACTGGG-CTTGTTCAGTCCTTGGAGCGAAACCT 476
Query 471 AACCAGGATCCAACATAGGACTTGCGCTGTTGTTGAAGCTCAGGGGCAGAGGAGGGTACA 530
|||||| ||||||||||||||| |||||||| |||||||||||| ||||||||| | ||
Sbjct 477 AACCAGAATCCAACATAGGACTCACGCTGTTGGTGAAGCTCAGGGACAGAGGAGGATGCA 536
Query 531 GTACACGAACATGGCTAATCAAGAACTGATGATGGCTAATACGATGAATCAACTTCAACA 590
||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 537 GTACACGAACATGGCTAGTCAAGAACTGATGATGGCTCATACGATGAACCAACTTCAACA 596
Query 591 ACACTCAAACCAGGTTTCCATGTATCTGTGGAACCATGGA-AACGGTGCTTTCTCACAAA 649
||| |||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||
Sbjct 597 ACATTCAAACCAGGTTTCCATGTATCTGTGGAACCATG-ATAACGGTTCTTTCTCGCAAA 655
Query 650 TCCCAGTCTCAGCATTGGCTTCAAACCAAACGCAATCTCTAGCTCCGATTCCGCCTGAAC 709
| |||||||| ||||| |||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 656 TACCAGTCTCTGCATTAGCTTCAAACCAAGCGCAATCTCTGGCTCCGATTCCGTCTGAAC 715
Query 710 TGATGATTTACCCGAATTCGGATGCGGGAAATTACTCGGGGTCTCTCGGGGTACAAGGAA 769
| ||||||||||| |||||||||| ||||| |||||||||||| || |||||||||||||
Sbjct 716 TAATGATTTACCCAAATTCGGATGTGGGAAGTTACTCGGGGTCACTTGGGGTACAAGGAA 775
Query 770 CTGGGATCAATGGGCTTCAGAACATGAACATGTTAACCTATAACAACATCAACAGCGTTA 829
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 776 CTGGGATCAACGGGCTTCAGACCATGAACATGTTAACCTACAACAACATCAACAGCGTTA 835
Query 830 ATGATTTCTCAAAACAGTTTGACCAGAATTCCAGAGCGGAAAGTTACTCTAGCTTACTTG 889
|||||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 836 ATGATTTCGCAAAACAGATTGACCAAAATTCCAGAGTGGAAAGTTACTCTAGCTTACTTG 895
Query 890 GGGTACACGAAGACGGAAACAATGAGTTTGAGAACCCTAACATGTCCAGCCGCAACAACT 949
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 896 GGGTACACGAATACGGAAACAATGAGTTTGAGAACACTAACATGTCCAGCCGCAACAACT 955
Query 950 TCAATGTTCAAGACTGTGCAGGGTTACTTGGGATGCAAGGA---G---CTGGAACTAACG 1003
||||||||||||||| |||||||||||||||| || ||||| | ||||||||||||
Sbjct 956 TCAATGTTCAAGACTATGCAGGGTTACTTGGGGTGGAAGGAACTGTAACTGGAACTAACG 1015
Query 1004 GGTTGCAGAGCATGAACATGCATGACTACAGTAACAACAACAGCATTAACTCTAATGGTC 1063
|||||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||
Sbjct 1016 GGTTGCAGAGCATGAACATGCACGACTACAACAACAACAACAACAGTAACGCTAATGGTC 1075
Query 1064 TTTCGCATCAG 1074
|||||||||||
Sbjct 1076 TTTCGCATCAG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5