BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18660.2 Length=2183 Score E Sequences producing significant alignments: (Bits) Value Ahg479372 jgi|Araly1|479372|fgenesh2_kg.3__2073__AT3G18660.2 3144 0.0 Ahg476876 jgi|Araly1|476876|fgenesh2_kg.2__2006__AT1G77130.1 265 1e-69 > Ahg479372 jgi|Araly1|479372|fgenesh2_kg.3__2073__AT3G18660.2 Length=2119 Score = 3144 bits (1702), Expect = 0.0 Identities = 1963/2090 (94%), Gaps = 13/2090 (1%) Strand=Plus/Plus Query 1 CTGTCCCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCACCCACCACCA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct 1 CTGTCTCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCAGCCACCGCTA 60 Query 61 CAACCGGTGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTACCGGCGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120 Query 121 GATTCCGGAGAAATAGCAAAGG-AGGTGGCAGATCGGATATGGTGAAACCGTTTAATATC 179 ||||||| |||||||||||||| | |||| |||||||||||| |||||||||||| |||| Sbjct 121 GATTCCGAAGAAATAGCAAAGGCA-GTGGTAGATCGGATATGCTGAAACCGTTTAGTATC 179 Query 180 ATAAATTTTTCGACACAAGACAAAAACAGTAGTTGTTGTTGTTTCACCAAGTTTCAGATC 239 ||||||||| | |||||||||||||||| |||||||||||||| || ||||||||||||| Sbjct 180 ATAAATTTTCCAACACAAGACAAAAACACTAGTTGTTGTTGTTGCAGCAAGTTTCAGATC 239 Query 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCCACTCTCTTCACCATTATCTATTCTCCT 299 |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCTACTCTATTCACCATTATTTATTCTCCT 299 Query 300 GAAGCTTATCATCATTCTCTTTCCCACTCATCTTCTCGATGGATATGGAGAAGACAAGAT 359 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 300 GAAGCTTATCATCATTCTCTTTCACACTCTTCTTCTCGATGGATATGGAGAAGACAAGAT 359 Query 360 CCACGTTACTTCTCGGATCTGGATATAAACTGGGACGATGTGACTAAAACCCTTGAGAAC 419 || |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct 360 CCTCGTTACGTCTCGGATCTGGACATAAACTGGGACGATGTGACCAAAACCCTTGAGAGC 419 Query 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTTGATTCGAACGAGATCCAACGATGG 479 ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTCGATTCGAACGAGATTCAGCGATGG 479 Query 480 AGAGAAGTATCCAAGAGCAAGGACAATGGGGATGAAGAAAAAGTTGTTGTATTGAATCTA 539 |||||||| ||||||||||| |||||| |||||||||||| ||||| |||||||||||| Sbjct 480 AGAGAAGTTTCCAAGAGCAACGACAATAAGGATGAAGAAAACGTTGTCGTATTGAATCTA 539 Query 540 GATTACGCAGACAAGAATGTGACTTGGGACGCACTATATCCAGAGTGGATCGATGAGGAG 599 || ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 540 GACTACGCGGACAAGAACGTGACTTGGGACGCACTCTATCCAGAGTGGATCGATGAGGAG 599 Query 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATATCCCGAACATTAAGGTACCTACAAGAAGA 659 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATCTCCCGAAGATTAAGGTACCTACAAGAAGA 659 Query 660 CTCGATCTGATCGTCGTGAAACTTCCTTGTCGGAAAGAAGGGAATTGGTCGAGAGACGTC 719 || ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 660 CTTGATCTTATCGTCGTGAAGCTTCCTTGTCGGAAAGAAGGAAATTGGTCGAGAGACGTC 719 Query 720 GGGAGATTGCATCTACAGCTAGCGGCTGCAACTGTGGCGGCTTCGGCCAAAGGGTTTTTC 779 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| Sbjct 720 GGGAGATTGCATCTACAGCTGGCGGCTGCAACGGTGGCGGCTTCGGCCAAAGGGCTTTTC 779 Query 780 AGGGGACATGTGTTTTTTGTATCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 780 AGGGGACATGTGTTGTTTGTCTCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839 Query 840 GATCTTGTGTCTCGGAGAGGCGATGTTTGGTTGTACAAACCTAATCTTGATACCTTGAGA 899 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 840 GATCTAGTGTCTCGGAGAGGCGATGTTTGGTTGTATAAACCTAATCTTGATACCTTGAGA 899 Query 900 GACAAGCTTCAGCTGCCTGTAGGGTCTTGTGAGCTATCTCTTCCTCTTGGCATCCAAGAT 959 || ||||||||||| |||||||| ||||||||||| |||||||| || |||||| |||| Sbjct 900 GATAAGCTTCAGCTTCCTGTAGGTTCTTGTGAGCTCTCTCTTCCCCTCGGCATCAAAGAG 959 Query 960 AGGCCAAGCTTAGGAAACCCTAAAAGAGAAGCTTACGCAACAATTCTTCACTCAGCTCAC 1019 || ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| Sbjct 960 AGACCAAGCTTAGGAAACCCTAAACGAGAAGCTTACGCAACGATTCTTCACTCCGCTCAC 1019 Query 1020 GTTTACGTCTGCGGTGCAATCGCCGCGGCTCAGAGCATAAGACAGTCTGGTTCGACGAGA 1079 ||||||||||| ||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 1020 GTTTACGTCTGTGGTGCAATCGCGGCGGCTCAGAGCATAAGACAGTCCGGGTCAACGAGA 1079 Query 1080 GACCTTGTTATCCTTGTTGATGACAACATCAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139 ||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1080 GACCTCGTGATCCTTGTCGATGATAACATAAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139 Query 1140 GCGGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAGGCAGAGAAAGATGCT 1199 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1140 GCAGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAAGCAGAGAAAGATGCT 1199 Query 1200 TACAACGAATGGAACTACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAAATC 1259 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1200 TACAACGAGTGGAACTACAGCAAGTTCCGGCTGTGGCAGCTGACTGATTACGACAAAATC 1259 Query 1260 ATTTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCT 1319 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1260 ATCTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCCTGTTCTCGATGCCT 1319 Query 1320 GAGATCTCAGCTACAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAG 1379 || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1320 GAAATCTCAGCTACAGGAAACAACGGAACTCTCTTTAATTCAGGAGTTATGGTGATCGAG 1379 Query 1380 CCTTGCAACTGTACGTTTCAGCTTCTGATGGAACATATAAACGAGATTGAGTCTTATAAC 1439 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1380 CCTTGCAACTGTACGTTTCAGCTTTTGATGGAACATATAAACGAGATTGAGTCTTACAAC 1439 Query 1440 GGTGGAGATCAAGGTTACTTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACAT 1499 || |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 1440 GGAGGAGATCAAGGTTACTTAAATGAGGTATTCACATGGTGGCACAGGATTCCGAAACAT 1499 Query 1500 ATGAATTTCTTGAAGCATTTTTGGATTGGCGATGAAGATGACGCGAA-ACGCAAGAAAAC 1558 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct 1500 ATGAATTTCTTGAAGCATTTTTGGGTTGGCGATGAAGATGACG-TAAGACGCAAGAAAAC 1558 Query 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGAAGC 1617 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACC-TGGGAATGAAGC 1617 Query 1618 CGTGGTTATGTTACCGTGACTACGACTGTAACTTCAACTCCGACATATTCGTTGAGTTTG 1677 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1618 CGTGGTTATGCTACCGTGACTACGACTGTAACTTCAACTCCGACATATTTGTTGAGTTTG 1677 Query 1678 CTACCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGGAACTTC 1737 |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1678 CTACAGATATCGCTCACCGAAAATGGTGGATGGTCCACGACGCCATGCCAGAGGAACTTC 1737 Query 1738 ACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1738 ACCAGTTTTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797 Query 1798 CAGAGGCCGCAAATTATGCCGACGGTCATTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1798 CAGAGGCCGCAAATTATGCCGATGGTCACTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857 Query 1858 AAATTTGCATCGACAAATTATGTAATTGGAAAAGTATGCTGCGGCATTGGGGCGAATCAA 1917 | ||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 1858 AGATTTGCATCGATAAATTGTGTAATTGGAAAAGTATGTTGCGGCATTGGGGAGAATCAA 1917 Query 1918 ATTGGACTGACTACGAGTCTTTTGTTCCCACCCCACCAGCCATTACCGTAGAC-CGGAGA 1976 ||||||| ||||||||||||||||||||||||||||| |||||||||| | | |||||| Sbjct 1918 ATTGGACCGACTACGAGTCTTTTGTTCCCACCCCACCGGCCATTACCGCCG-CTCGGAGA 1976 Query 1977 TCATCACTTCCCGGCCATAACTTGTGACGCAATAATTATACATACTT-AT-T-AATGGAT 2033 || ||||||||||||||||||||||||||||||| |||||||||||| || | ||||||| Sbjct 1977 TCGTCACTTCCCGGCCATAACTTGTGACGCAATATTTATACATACTTTATATCAATGGAT 2036 Query 2034 TTCATGAG-TTTTTTGG-TTTGAATTGTTGCTGCGAGATTAGGTGAATAT 2081 |||||||| |||||| ||||||||||| |||||||||||||| ||||| Sbjct 2037 TTCATGAGATTTTTTTTATTTGAATTGTTTCTGCGAGATTAGGTAAATAT 2086 > Ahg476876 jgi|Araly1|476876|fgenesh2_kg.2__2006__AT1G77130.1 Length=2105 Score = 265 bits (143), Expect = 1e-69 Identities = 831/1152 (72%), Gaps = 91/1152 (8%) Strand=Plus/Plus Query 698 AGGGAATTGGTCGAGAGACGTCGG-GAGATTGCATCTACAGCTAGCGGCTGCAAC-TGTG 755 ||| || ||||| ||||| || || |||||||| |||| || | || || | ||| Sbjct 641 AGGAAAATGGTCAAGAGATGT-GGCTCGATTGCATTTACAACTTTCTGCAGC-TCGAGTG 698 Query 756 GCGGCTTCGGCCAAAGGGTTTTTCA-G-GGGACATGTGTTTTTTGTATCTAGA-TGCTTT 812 |||||||| | |||||| |||| | | |||||| |||| |||||| || |||||| Sbjct 699 GCGGCTTCTTCTAAAGGG--CTTCATGATGTTCATGTGATTTTGGTATCT-GATTGCTTT 755 Query 813 CCGATTCCGAATC-TTTT-CCGGTGTAAAGATCTTG-TGTCTCG-GAGAGGCGATGTTTG 868 || ||||| |||| |||| || | || |||| |||| || | || | ||| | | || Sbjct 756 CCAATTCCAAATCTTTTTACC-G-GTCAAGAACTTGTTG-CCCGTCA-AGGAAACATATG 811 Query 869 GTTGTACAAACCTAATCTTGATACC--TTGAGAGACAAGCTT-CAGCTGCCTGTAGGGTC 925 | |||| || ||||| | | | ||| | ||| | ||| || ||||| ||||| || || Sbjct 812 GCTGTATAAGCCTAA-CCT-ACACCAGCTAAGACAAAAG-TTACAGCTTCCTGTTGGTTC 868 Query 926 TTGTGAGCTATCTCTTCCTCTTGGC-ATC-CAAGAT-AGGCCAAGCTTAGGAAACCCTAA 982 ||||| || ||| |||||||| | | | ||||| | | | || | || | || Sbjct 869 ATGTGAACTTTCTGTTCCTCTT--CAAGCTAAAGATAATTTCTA-CTCCGCAAGTGC-AA 924 Query 983 A-AGAGAAGCTTACGCAACAATTCTT-CACTCAGCTCACGTTTACGTCTGCGGTGCAATC 1040 | | ||||||||| || || | |||| || || ||||| |||| ||||| || || || Sbjct 925 AGAAAGAAGCTTATGCGACTA-TCTTGCATTCTGCTCAATTTTATGTCTGTGGAGCCATT 983 Query 1041 GCCGCGGCTCAGAGCATAAGACA-GTCTGGTTCGACGAGAGACCTTGTTATCCTTGTTGA 1099 || || || |||||||| || | ||| || || || | || || || || |||||||| Sbjct 984 GCAGCTGCGCAGAGCATTCGA-ATGTCAGGCTCTACTCGTGATCTGGTCATACTTGTTGA 1042 Query 1100 TGACAAC-ATCAGCGGTTACCACCGGAGTGGAC-TAGAAGCCGCGGGTTGGCAA-ATCCG 1156 ||| || || |||| ||||| ||||| | | | ||| || || ||| || || | Sbjct 1043 TGA-TACGATAAGCGAATACCATAAAAGTGG-CTTGGTAGCTGCTGGATGG-AAGATTCA 1099 Query 1157 GACGATACAGAGGATTC-GAAACCCTAAGGC-AGAGAAAGATGCTTACAACGAATGGAAC 1214 | | | || | || || | ||||| || || | | || |||| ||||||||||||||| Sbjct 1100 CATGTTTCA-AAGAATCAGGAACCCGAATGCTATACCAA-ATGCATACAACGAATGGAAC 1157 Query 1215 TACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAA-ATCATTTTCATCGACGC 1273 |||||||||||||| || ||||| ||||||| ||| | || ||||| |||||||| || Sbjct 1158 TACAGCAAGTTCCGTCTTTGGCAATTGACTGAATAC-AGTAAGATCATCTTCATCGATGC 1216 Query 1274 GGATC-T-CTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCTGAGATCTCAGCT 1331 || | | |||| || |||||||||| |||||| | ||| | | |||||||| || || Sbjct 1217 AGA-CATGCTTA-TCCTGAGAAACATTGATTTCCTCTTCGAGTTCCCTGAGATATCTGCA 1274 Query 1332 ACAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAGCCTTGC-AACTG 1390 || |||||||||| || || || || || || | |||||| | ||||| | | || | Sbjct 1275 ACTGGAAACAATGCTACGCTCTTCAACTCCGGTCTAATGGTGGTTGAGCCAT-CTAATTC 1333 Query 1391 TACGTTTCAGCTT-CTGATGGA-A-CATATAAACGA-GATTGAGTCTTATAACGGTGGAG 1446 || || ||| || || ||||| | ||| ||| || | ||| |||||| ||||| |||| Sbjct 1334 AACATTCCAG-TTACTAATGGACAACAT-TAAT-GAAG-TTGTGTCTTACAACGGAGGAG 1389 Query 1447 ATCAAGGTTAC-TTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACATATGAAT 1505 | ||||||||| |||| |||| |||||||||||||||| || || || ||||| |||||| Sbjct 1390 ACCAAGGTTACCTTAA-CGAGATATTCACATGGTGGCATCGCATCCCGAAACACATGAAT 1448 Query 1506 TTCTTGAAGCATTTTTGG-ATTGGCGATGAAGATGACGCGAAACGCAA--GAAAACAGAG 1562 |||||||||||||| ||| | || || ||| ||| | ||| | || ||| || ||| Sbjct 1449 TTCTTGAAGCATTTCTGGGAA-GGAGACGAACCTGA-GATAAA-GAAAATGAAGAC-GAG 1504 Query 1563 -CTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGA-AG-CC 1618 || |||||||| || |||||| | || || ||||||||||||||||| || | | || Sbjct 1505 TCTATTTGGAGCTGATCCTCCTATCCTCTACGTTCTTCATTACCTTGGTTATAACAAACC 1564 Query 1619 GTGGTTATG-TTACCGTGACTACGACTGTAACTTCAAC-TCCGACATATTCGTTGAGTTT 1676 |||||||| || | | ||||| || || |||| || || || || ||| || || Sbjct 1565 CTGGTTATGCTT-CAGAGACTATGATTGCAACTGGAATGTC-GATATTTTCCAGGAATTC 1622 Query 1677 GCTACCGAT-ATCGCTCATCGAAA-ATGGTGGATG-GTCCACGACGCCATGCCACAGGAA 1733 || | || | || ||| ||| |||||||| | || |||||||| ||||| || || Sbjct 1623 GCAAGTGACGAA-GCACATA-AAACATGGTGGA-GAGTGCACGACGCAATGCCTGAG-AA 1678 Query 1734 CTT-CACCAA-TTCTGT-TACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGC 1790 ||| ||| || |||||| | || | |||| || || ||||| || || |||| ||||| Sbjct 1679 CTTGCAC-AAGTTCTGTCTTCT-GAGATCGAAACAGAAGGCGCAACTTGAATGGGATCGG 1736 Query 1791 CGGCAAGCAGAG 1802 | ||||||||| Sbjct 1737 AGACAAGCAGAG 1748 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82160658465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5