BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18660.2
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479372 jgi|Araly1|479372|fgenesh2_kg.3__2073__AT3G18660.2 3144 0.0
Ahg476876 jgi|Araly1|476876|fgenesh2_kg.2__2006__AT1G77130.1 265 1e-69
> Ahg479372 jgi|Araly1|479372|fgenesh2_kg.3__2073__AT3G18660.2
Length=2119
Score = 3144 bits (1702), Expect = 0.0
Identities = 1963/2090 (94%), Gaps = 13/2090 (1%)
Strand=Plus/Plus
Query 1 CTGTCCCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCACCCACCACCA 60
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1 CTGTCTCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCAGCCACCGCTA 60
Query 61 CAACCGGTGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTACCGGCGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120
Query 121 GATTCCGGAGAAATAGCAAAGG-AGGTGGCAGATCGGATATGGTGAAACCGTTTAATATC 179
||||||| |||||||||||||| | |||| |||||||||||| |||||||||||| ||||
Sbjct 121 GATTCCGAAGAAATAGCAAAGGCA-GTGGTAGATCGGATATGCTGAAACCGTTTAGTATC 179
Query 180 ATAAATTTTTCGACACAAGACAAAAACAGTAGTTGTTGTTGTTTCACCAAGTTTCAGATC 239
||||||||| | |||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 180 ATAAATTTTCCAACACAAGACAAAAACACTAGTTGTTGTTGTTGCAGCAAGTTTCAGATC 239
Query 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCCACTCTCTTCACCATTATCTATTCTCCT 299
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCTACTCTATTCACCATTATTTATTCTCCT 299
Query 300 GAAGCTTATCATCATTCTCTTTCCCACTCATCTTCTCGATGGATATGGAGAAGACAAGAT 359
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 300 GAAGCTTATCATCATTCTCTTTCACACTCTTCTTCTCGATGGATATGGAGAAGACAAGAT 359
Query 360 CCACGTTACTTCTCGGATCTGGATATAAACTGGGACGATGTGACTAAAACCCTTGAGAAC 419
|| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 360 CCTCGTTACGTCTCGGATCTGGACATAAACTGGGACGATGTGACCAAAACCCTTGAGAGC 419
Query 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTTGATTCGAACGAGATCCAACGATGG 479
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTCGATTCGAACGAGATTCAGCGATGG 479
Query 480 AGAGAAGTATCCAAGAGCAAGGACAATGGGGATGAAGAAAAAGTTGTTGTATTGAATCTA 539
|||||||| ||||||||||| |||||| |||||||||||| ||||| ||||||||||||
Sbjct 480 AGAGAAGTTTCCAAGAGCAACGACAATAAGGATGAAGAAAACGTTGTCGTATTGAATCTA 539
Query 540 GATTACGCAGACAAGAATGTGACTTGGGACGCACTATATCCAGAGTGGATCGATGAGGAG 599
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 GACTACGCGGACAAGAACGTGACTTGGGACGCACTCTATCCAGAGTGGATCGATGAGGAG 599
Query 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATATCCCGAACATTAAGGTACCTACAAGAAGA 659
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATCTCCCGAAGATTAAGGTACCTACAAGAAGA 659
Query 660 CTCGATCTGATCGTCGTGAAACTTCCTTGTCGGAAAGAAGGGAATTGGTCGAGAGACGTC 719
|| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 660 CTTGATCTTATCGTCGTGAAGCTTCCTTGTCGGAAAGAAGGAAATTGGTCGAGAGACGTC 719
Query 720 GGGAGATTGCATCTACAGCTAGCGGCTGCAACTGTGGCGGCTTCGGCCAAAGGGTTTTTC 779
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 720 GGGAGATTGCATCTACAGCTGGCGGCTGCAACGGTGGCGGCTTCGGCCAAAGGGCTTTTC 779
Query 780 AGGGGACATGTGTTTTTTGTATCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGGGGACATGTGTTGTTTGTCTCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839
Query 840 GATCTTGTGTCTCGGAGAGGCGATGTTTGGTTGTACAAACCTAATCTTGATACCTTGAGA 899
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 GATCTAGTGTCTCGGAGAGGCGATGTTTGGTTGTATAAACCTAATCTTGATACCTTGAGA 899
Query 900 GACAAGCTTCAGCTGCCTGTAGGGTCTTGTGAGCTATCTCTTCCTCTTGGCATCCAAGAT 959
|| ||||||||||| |||||||| ||||||||||| |||||||| || |||||| ||||
Sbjct 900 GATAAGCTTCAGCTTCCTGTAGGTTCTTGTGAGCTCTCTCTTCCCCTCGGCATCAAAGAG 959
Query 960 AGGCCAAGCTTAGGAAACCCTAAAAGAGAAGCTTACGCAACAATTCTTCACTCAGCTCAC 1019
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 960 AGACCAAGCTTAGGAAACCCTAAACGAGAAGCTTACGCAACGATTCTTCACTCCGCTCAC 1019
Query 1020 GTTTACGTCTGCGGTGCAATCGCCGCGGCTCAGAGCATAAGACAGTCTGGTTCGACGAGA 1079
||||||||||| ||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 1020 GTTTACGTCTGTGGTGCAATCGCGGCGGCTCAGAGCATAAGACAGTCCGGGTCAACGAGA 1079
Query 1080 GACCTTGTTATCCTTGTTGATGACAACATCAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139
||||| || |||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1080 GACCTCGTGATCCTTGTCGATGATAACATAAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139
Query 1140 GCGGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAGGCAGAGAAAGATGCT 1199
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 GCAGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAAGCAGAGAAAGATGCT 1199
Query 1200 TACAACGAATGGAACTACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAAATC 1259
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 TACAACGAGTGGAACTACAGCAAGTTCCGGCTGTGGCAGCTGACTGATTACGACAAAATC 1259
Query 1260 ATTTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCT 1319
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 ATCTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCCTGTTCTCGATGCCT 1319
Query 1320 GAGATCTCAGCTACAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAG 1379
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1320 GAAATCTCAGCTACAGGAAACAACGGAACTCTCTTTAATTCAGGAGTTATGGTGATCGAG 1379
Query 1380 CCTTGCAACTGTACGTTTCAGCTTCTGATGGAACATATAAACGAGATTGAGTCTTATAAC 1439
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1380 CCTTGCAACTGTACGTTTCAGCTTTTGATGGAACATATAAACGAGATTGAGTCTTACAAC 1439
Query 1440 GGTGGAGATCAAGGTTACTTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACAT 1499
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 1440 GGAGGAGATCAAGGTTACTTAAATGAGGTATTCACATGGTGGCACAGGATTCCGAAACAT 1499
Query 1500 ATGAATTTCTTGAAGCATTTTTGGATTGGCGATGAAGATGACGCGAA-ACGCAAGAAAAC 1558
|||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 1500 ATGAATTTCTTGAAGCATTTTTGGGTTGGCGATGAAGATGACG-TAAGACGCAAGAAAAC 1558
Query 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGAAGC 1617
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACC-TGGGAATGAAGC 1617
Query 1618 CGTGGTTATGTTACCGTGACTACGACTGTAACTTCAACTCCGACATATTCGTTGAGTTTG 1677
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1618 CGTGGTTATGCTACCGTGACTACGACTGTAACTTCAACTCCGACATATTTGTTGAGTTTG 1677
Query 1678 CTACCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGGAACTTC 1737
|||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1678 CTACAGATATCGCTCACCGAAAATGGTGGATGGTCCACGACGCCATGCCAGAGGAACTTC 1737
Query 1738 ACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 ACCAGTTTTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797
Query 1798 CAGAGGCCGCAAATTATGCCGACGGTCATTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1798 CAGAGGCCGCAAATTATGCCGATGGTCACTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857
Query 1858 AAATTTGCATCGACAAATTATGTAATTGGAAAAGTATGCTGCGGCATTGGGGCGAATCAA 1917
| ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 1858 AGATTTGCATCGATAAATTGTGTAATTGGAAAAGTATGTTGCGGCATTGGGGAGAATCAA 1917
Query 1918 ATTGGACTGACTACGAGTCTTTTGTTCCCACCCCACCAGCCATTACCGTAGAC-CGGAGA 1976
||||||| ||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 1918 ATTGGACCGACTACGAGTCTTTTGTTCCCACCCCACCGGCCATTACCGCCG-CTCGGAGA 1976
Query 1977 TCATCACTTCCCGGCCATAACTTGTGACGCAATAATTATACATACTT-AT-T-AATGGAT 2033
|| ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||
Sbjct 1977 TCGTCACTTCCCGGCCATAACTTGTGACGCAATATTTATACATACTTTATATCAATGGAT 2036
Query 2034 TTCATGAG-TTTTTTGG-TTTGAATTGTTGCTGCGAGATTAGGTGAATAT 2081
|||||||| |||||| ||||||||||| |||||||||||||| |||||
Sbjct 2037 TTCATGAGATTTTTTTTATTTGAATTGTTTCTGCGAGATTAGGTAAATAT 2086
> Ahg476876 jgi|Araly1|476876|fgenesh2_kg.2__2006__AT1G77130.1
Length=2105
Score = 265 bits (143), Expect = 1e-69
Identities = 831/1152 (72%), Gaps = 91/1152 (8%)
Strand=Plus/Plus
Query 698 AGGGAATTGGTCGAGAGACGTCGG-GAGATTGCATCTACAGCTAGCGGCTGCAAC-TGTG 755
||| || ||||| ||||| || || |||||||| |||| || | || || | |||
Sbjct 641 AGGAAAATGGTCAAGAGATGT-GGCTCGATTGCATTTACAACTTTCTGCAGC-TCGAGTG 698
Query 756 GCGGCTTCGGCCAAAGGGTTTTTCA-G-GGGACATGTGTTTTTTGTATCTAGA-TGCTTT 812
|||||||| | |||||| |||| | | |||||| |||| |||||| || ||||||
Sbjct 699 GCGGCTTCTTCTAAAGGG--CTTCATGATGTTCATGTGATTTTGGTATCT-GATTGCTTT 755
Query 813 CCGATTCCGAATC-TTTT-CCGGTGTAAAGATCTTG-TGTCTCG-GAGAGGCGATGTTTG 868
|| ||||| |||| |||| || | || |||| |||| || | || | ||| | | ||
Sbjct 756 CCAATTCCAAATCTTTTTACC-G-GTCAAGAACTTGTTG-CCCGTCA-AGGAAACATATG 811
Query 869 GTTGTACAAACCTAATCTTGATACC--TTGAGAGACAAGCTT-CAGCTGCCTGTAGGGTC 925
| |||| || ||||| | | | ||| | ||| | ||| || ||||| ||||| || ||
Sbjct 812 GCTGTATAAGCCTAA-CCT-ACACCAGCTAAGACAAAAG-TTACAGCTTCCTGTTGGTTC 868
Query 926 TTGTGAGCTATCTCTTCCTCTTGGC-ATC-CAAGAT-AGGCCAAGCTTAGGAAACCCTAA 982
||||| || ||| |||||||| | | | ||||| | | | || | || | ||
Sbjct 869 ATGTGAACTTTCTGTTCCTCTT--CAAGCTAAAGATAATTTCTA-CTCCGCAAGTGC-AA 924
Query 983 A-AGAGAAGCTTACGCAACAATTCTT-CACTCAGCTCACGTTTACGTCTGCGGTGCAATC 1040
| | ||||||||| || || | |||| || || ||||| |||| ||||| || || ||
Sbjct 925 AGAAAGAAGCTTATGCGACTA-TCTTGCATTCTGCTCAATTTTATGTCTGTGGAGCCATT 983
Query 1041 GCCGCGGCTCAGAGCATAAGACA-GTCTGGTTCGACGAGAGACCTTGTTATCCTTGTTGA 1099
|| || || |||||||| || | ||| || || || | || || || || ||||||||
Sbjct 984 GCAGCTGCGCAGAGCATTCGA-ATGTCAGGCTCTACTCGTGATCTGGTCATACTTGTTGA 1042
Query 1100 TGACAAC-ATCAGCGGTTACCACCGGAGTGGAC-TAGAAGCCGCGGGTTGGCAA-ATCCG 1156
||| || || |||| ||||| ||||| | | | ||| || || ||| || || |
Sbjct 1043 TGA-TACGATAAGCGAATACCATAAAAGTGG-CTTGGTAGCTGCTGGATGG-AAGATTCA 1099
Query 1157 GACGATACAGAGGATTC-GAAACCCTAAGGC-AGAGAAAGATGCTTACAACGAATGGAAC 1214
| | | || | || || | ||||| || || | | || |||| |||||||||||||||
Sbjct 1100 CATGTTTCA-AAGAATCAGGAACCCGAATGCTATACCAA-ATGCATACAACGAATGGAAC 1157
Query 1215 TACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAA-ATCATTTTCATCGACGC 1273
|||||||||||||| || ||||| ||||||| ||| | || ||||| |||||||| ||
Sbjct 1158 TACAGCAAGTTCCGTCTTTGGCAATTGACTGAATAC-AGTAAGATCATCTTCATCGATGC 1216
Query 1274 GGATC-T-CTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCTGAGATCTCAGCT 1331
|| | | |||| || |||||||||| |||||| | ||| | | |||||||| || ||
Sbjct 1217 AGA-CATGCTTA-TCCTGAGAAACATTGATTTCCTCTTCGAGTTCCCTGAGATATCTGCA 1274
Query 1332 ACAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAGCCTTGC-AACTG 1390
|| |||||||||| || || || || || || | |||||| | ||||| | | || |
Sbjct 1275 ACTGGAAACAATGCTACGCTCTTCAACTCCGGTCTAATGGTGGTTGAGCCAT-CTAATTC 1333
Query 1391 TACGTTTCAGCTT-CTGATGGA-A-CATATAAACGA-GATTGAGTCTTATAACGGTGGAG 1446
|| || ||| || || ||||| | ||| ||| || | ||| |||||| ||||| ||||
Sbjct 1334 AACATTCCAG-TTACTAATGGACAACAT-TAAT-GAAG-TTGTGTCTTACAACGGAGGAG 1389
Query 1447 ATCAAGGTTAC-TTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACATATGAAT 1505
| ||||||||| |||| |||| |||||||||||||||| || || || ||||| ||||||
Sbjct 1390 ACCAAGGTTACCTTAA-CGAGATATTCACATGGTGGCATCGCATCCCGAAACACATGAAT 1448
Query 1506 TTCTTGAAGCATTTTTGG-ATTGGCGATGAAGATGACGCGAAACGCAA--GAAAACAGAG 1562
|||||||||||||| ||| | || || ||| ||| | ||| | || ||| || |||
Sbjct 1449 TTCTTGAAGCATTTCTGGGAA-GGAGACGAACCTGA-GATAAA-GAAAATGAAGAC-GAG 1504
Query 1563 -CTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGA-AG-CC 1618
|| |||||||| || |||||| | || || ||||||||||||||||| || | | ||
Sbjct 1505 TCTATTTGGAGCTGATCCTCCTATCCTCTACGTTCTTCATTACCTTGGTTATAACAAACC 1564
Query 1619 GTGGTTATG-TTACCGTGACTACGACTGTAACTTCAAC-TCCGACATATTCGTTGAGTTT 1676
|||||||| || | | ||||| || || |||| || || || || ||| || ||
Sbjct 1565 CTGGTTATGCTT-CAGAGACTATGATTGCAACTGGAATGTC-GATATTTTCCAGGAATTC 1622
Query 1677 GCTACCGAT-ATCGCTCATCGAAA-ATGGTGGATG-GTCCACGACGCCATGCCACAGGAA 1733
|| | || | || ||| ||| |||||||| | || |||||||| ||||| || ||
Sbjct 1623 GCAAGTGACGAA-GCACATA-AAACATGGTGGA-GAGTGCACGACGCAATGCCTGAG-AA 1678
Query 1734 CTT-CACCAA-TTCTGT-TACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGC 1790
||| ||| || |||||| | || | |||| || || ||||| || || |||| |||||
Sbjct 1679 CTTGCAC-AAGTTCTGTCTTCT-GAGATCGAAACAGAAGGCGCAACTTGAATGGGATCGG 1736
Query 1791 CGGCAAGCAGAG 1802
| |||||||||
Sbjct 1737 AGACAAGCAGAG 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5