BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18670.1 Length=1797 Score E Sequences producing significant alignments: (Bits) Value Ahg904843 jgi|Araly1|904843|Al_scaffold_0003_1971 2706 0.0 > Ahg904843 jgi|Araly1|904843|Al_scaffold_0003_1971 Length=1818 Score = 2706 bits (1465), Expect = 0.0 Identities = 1678/1782 (94%), Gaps = 10/1782 (1%) Strand=Plus/Plus Query 1 ATGGATACCGAGAAAGGTTATCCCAGAGGTTTCAGAGCAGAGAGTCTACGACCAGAAACG 60 ||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 1 ATGGATACCGAAAAAGGTTATCCAAGAGGTTTCAGAGCAGACAGTCTACGAACAGAAACA 60 Query 61 GGCCCCAGAAGCTTTCGGTTTGATAGTATGCAGATCGATGAAGCAGCCGATCTACAAAAA 120 |||| || ||| ||||| | ||||||||||||||||||||||||||||| |||| | || Sbjct 61 GGCCGCATAAGTTTTCGATCAGATAGTATGCAGATCGATGAAGCAGCCGAGCTACCACAA 120 Query 121 GACGAGATACGACAAGAGAACTCGACCTATCTTGTCCTCTTCAAGAACATAGACAGTGGA 180 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 GGCGAGATACGACAAGAGAACTCGACCTATCTTGTCCTTTTCAAGAACATAGACAGTGGA 180 Query 181 GAGTTGGAAGCCACGAAAGACTTCTTGGACCGAAACCCTGAAGCTTTAACCGCAATCTTA 240 | |||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||| Sbjct 181 AACTTGGAAGCGACGAAAGAGTTCTTGGACCGAAACCCTGAGGCTTTAACCGCAAGCTTA 240 Query 241 ACCTCTAATGGAGACACTCCAATCCATAAAGCTGTTTTGTCGGGTCACATCAAGATCGTG 300 |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 ACCTCTAACGGAGACACACCAATCCATAAAGCTGTTCTGTCGGGTCACATCAAGATCGTG 300 Query 301 GAAGAGATCATTAGAAGAATTCATGATCCAGAGCAAGTGTTAAAGATCAAGAACGATAAT 360 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 GAAGAGATCATTAGAAGAATTCATGATCCAAAGCAAGTGTTAAAGATCAAGAACGATAAT 360 Query 361 GGTTATACAGCGCTTACTTATGCTGCCACTGGTGGAATTGTAAGAATTGCAGAGTGTTTG 420 ||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||||||| Sbjct 361 GGTTACACAGCGCTTAGTTATGCTGCCACTGGTGGGATTGTGAGAATTGCAGAGTGTTTG 420 Query 421 GTGAATAAG-TGTCCTGGTTTGGTCAGTGTTCGGAATGCGAAAGAGCATATACCGATCGT 479 |||||| || ||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 421 GTGAAT-AGATGTCCCGGTTTGGTTAGTGTTCGGAATGCGAAAGAGCATATACCAATCGT 479 Query 480 GGTGGCTTCATTGTACGGTCACAAACATTTGGTTCAGTATCTTTACAGTCACACACCTCT 539 ||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||| Sbjct 480 GGTGGCTTCGTTGTACGGTCACAAACATCTGGTTGAGTATCTTTACAATCACACACCTCT 539 Query 540 CAGTGATCTTGATCCTTGTGATGATTCAGATGAACACAAGGGCAAGAACGGAGCGATGCT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CAGTGATCTTGATCCTTGTGATGATTCAGATGAACACAAGGGCAAGAACGGAGCGATGCT 599 Query 600 CGTGACAAATTGTATTGTCGATGGATTATATTGTATTGCTTTGGATCTGATTCAGAGGTA 659 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 600 CGTGACAAATTGTATTGTAGATGGATTATATGGTATTGCTTTGGATCTGATTCAGAGGTA 659 Query 660 TCCTAAGTTGGCTTATACTCGAGACAGTGATAACGATACAGCGATCATGGCGCTTGCTCA 719 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct 660 TCCTAAGTTGGCTTATACTCGAGACAGCGATAACGATACAGCGATTATCGCGCTTGCTCA 719 Query 720 AACACCTTATGCGTTTCCTAGCGTTCCACGCATAATTAGACGTGTATACAAACTAAAGCT 779 ||| ||| ||||||| || || ||||||| |||||||||||||||||||||||| ||||| Sbjct 720 AACGCCTCATGCGTTCCCCAGTGTTCCACACATAATTAGACGTGTATACAAACTGAAGCT 779 Query 780 AGGACATGCTCAAGCTAAAGAAATACTAGACTGTATCTGTCAAGAGATACCTAAATTTGA 839 ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 780 AGGACATGCTCAAGCCAAAGAAATACTAGACTGTATCTGCCAAGAGATACCAAAATTTGA 839 Query 840 CGCGGCTCAACAAAAGAACGCTGGTCTAAACCAAGCTCTCTTTAAGGCGGTAGAGAATGG 899 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 840 CGCGGCCCAACAGAAGAACGCTGGCCTAAACCAAGCTCTCTTTAAGGCGGTAGAGAATGG 899 Query 900 AATCGTAGAGTATATCGAGGAAATGATGAGGCATTATCCTGATATCGTATGGTCCAAAAA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 900 TATCGTAGAGTATATCGAGGAAATGATGAGGCATTATCCTGATATCGTATGGTTCAAAGA 959 Query 960 TAGT-AGTGGTCTTAACATCTTCTTCTACGCGGTAAGCCAGAGACAAGAAAAGATCTTTA 1018 || | | |||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 960 TAATTA-TGGTCTTAACCTCTTCTTCTACGCGGTAAGCCAGAGACAAGAGAAGATCTTTA 1018 Query 1019 GCCTCATTTACAATATAGGTGCTAAGAAGAACATCCTCGCTACAAATTGGGACATATTCC 1078 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1019 GCCTCATTTACAATATGGGTGCTAAGAAGAACATCCTCGCTACAAATTGGGACAAACTCC 1078 Query 1079 ATAACAATATGCTTCATCACGCCGCGTATAGAGCCCCAGCCTCAAGGCTTAATCTCATTC 1138 ||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||| Sbjct 1079 ATAACAATATGCTTCATCATGCCGCTTATCGAGCCCCAGCCTCACGGCTTAATCTCATTC 1138 Query 1139 CTGGTGCAGCTCTTCAGATGCAAAGGGAACTACAATGGTTTAAGGAAGTGGAGAAGTTAG 1198 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1139 CTGGTGCAGCTCTTCAGATGCAAAGGGAACTACAATGGTTCAAGGAAGTGGAGAGGTTAG 1198 Query 1199 TGCAACCGAAGCATCGAAAAATGGTTAACTTGAAGCAGAAGAAAACTCCAAAGGCTCTGT 1258 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TGCAACCGAAGCATCGGAAAATGGTTAACTTGAAGCAGAAGAAAACTCCAAAGGCTCTGT 1258 Query 1259 TTACAGACCAACACAAGGATCTCGTGGAGCAAGGAGAGAAATGGATGAAAGAAACAGCAA 1318 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TTACAGACCAACACAAGGACCTCGTGGAGCAAGGAGAGAAATGGATGAAAGAAACAGCAG 1318 Query 1319 CTTCTTGCACAGTCGTTGCCGCTCTAATCACCACAATGATGTTTTCCTCCGCCTTTACTG 1378 |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct 1319 CTTCTTGCACAGTCGTAGCCGCTCTAATCACCACAATGATGTTTTCCTCGGCGTTTACTG 1378 Query 1379 TCCCCGGAGGTTACCGTTCAGACGGCATGCCACTCTACATCCACCAGCACA-GATTTAAG 1437 |||||||||||||||||||||| ||||||||||||||||||||| |||||| | |||||| Sbjct 1379 TCCCCGGAGGTTACCGTTCAGATGGCATGCCACTCTACATCCACAAGCACATG-TTTAAG 1437 Query 1438 ATATTCCTCATCTCCGACGCTATCTCTCTTTTCACCTCATGTATGTCTCTCCTCATGTTC 1497 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1438 ATTTTCCTCATCTCCGACGCTATCTCTCTTTTCACATCATGTATGTCTCTCCTCATGTTC 1497 Query 1498 CTCGGCATTCTCAAGTCTCGCTACCGTGAAGAGGATTTTCTTCGATCACTTCCGACAAAA 1557 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1498 CTCGGCATTCTCAAGTCTCGCTACCGTGAAGAGGACTTTCTTCGATCACTTCCGACAAAA 1557 Query 1558 CTGATCGTGGGTCTTTTGGCTTTGTTTCTTTCGATGGCGACGATGATTGTGACTTTTGTC 1617 ||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||| Sbjct 1558 CTGATCGTGGGTCTTTTTTCTTTGTTTCTGTCGATGGCGACAATGATGGTGACTTTTGTC 1617 Query 1618 GTGACGCTCATGACTCTGGTTGGAGAGAAAATCTCGTGGGTTTCGGCTCAATTTATGTTT 1677 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1618 GTGACACTCATGACTTTGGTTGGAGAGAAAATCTCGTGGGTTTCGGCTCAATTTATGTTT 1677 Query 1678 CTTGCGGTGATTCCGCTGGGGATGTTCGTTGTCCTTCAGTTTCCGGTGTTACTTGAGATC 1737 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1678 CTTGCGGTGATTCCGCTGGGGATGTTCGTTGTTCTTCAGTTTCCGGTTTTACTTGAGATC 1737 Query 1738 TTCCGCGCCACTTATTGTCC-TA-ACGTTTTTGATAAACCTC 1777 ||| || | ||||||| ||| || | ||||||||||| |||| Sbjct 1738 TTCTGCTCGACTTATT-TCCCTAGA-GTTTTTGATAAGCCTC 1777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67457823895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5