BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18670.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904843 jgi|Araly1|904843|Al_scaffold_0003_1971 2706 0.0
> Ahg904843 jgi|Araly1|904843|Al_scaffold_0003_1971
Length=1818
Score = 2706 bits (1465), Expect = 0.0
Identities = 1678/1782 (94%), Gaps = 10/1782 (1%)
Strand=Plus/Plus
Query 1 ATGGATACCGAGAAAGGTTATCCCAGAGGTTTCAGAGCAGAGAGTCTACGACCAGAAACG 60
||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1 ATGGATACCGAAAAAGGTTATCCAAGAGGTTTCAGAGCAGACAGTCTACGAACAGAAACA 60
Query 61 GGCCCCAGAAGCTTTCGGTTTGATAGTATGCAGATCGATGAAGCAGCCGATCTACAAAAA 120
|||| || ||| ||||| | ||||||||||||||||||||||||||||| |||| | ||
Sbjct 61 GGCCGCATAAGTTTTCGATCAGATAGTATGCAGATCGATGAAGCAGCCGAGCTACCACAA 120
Query 121 GACGAGATACGACAAGAGAACTCGACCTATCTTGTCCTCTTCAAGAACATAGACAGTGGA 180
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGCGAGATACGACAAGAGAACTCGACCTATCTTGTCCTTTTCAAGAACATAGACAGTGGA 180
Query 181 GAGTTGGAAGCCACGAAAGACTTCTTGGACCGAAACCCTGAAGCTTTAACCGCAATCTTA 240
| |||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 181 AACTTGGAAGCGACGAAAGAGTTCTTGGACCGAAACCCTGAGGCTTTAACCGCAAGCTTA 240
Query 241 ACCTCTAATGGAGACACTCCAATCCATAAAGCTGTTTTGTCGGGTCACATCAAGATCGTG 300
|||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 ACCTCTAACGGAGACACACCAATCCATAAAGCTGTTCTGTCGGGTCACATCAAGATCGTG 300
Query 301 GAAGAGATCATTAGAAGAATTCATGATCCAGAGCAAGTGTTAAAGATCAAGAACGATAAT 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GAAGAGATCATTAGAAGAATTCATGATCCAAAGCAAGTGTTAAAGATCAAGAACGATAAT 360
Query 361 GGTTATACAGCGCTTACTTATGCTGCCACTGGTGGAATTGTAAGAATTGCAGAGTGTTTG 420
||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 GGTTACACAGCGCTTAGTTATGCTGCCACTGGTGGGATTGTGAGAATTGCAGAGTGTTTG 420
Query 421 GTGAATAAG-TGTCCTGGTTTGGTCAGTGTTCGGAATGCGAAAGAGCATATACCGATCGT 479
|||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 421 GTGAAT-AGATGTCCCGGTTTGGTTAGTGTTCGGAATGCGAAAGAGCATATACCAATCGT 479
Query 480 GGTGGCTTCATTGTACGGTCACAAACATTTGGTTCAGTATCTTTACAGTCACACACCTCT 539
||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 480 GGTGGCTTCGTTGTACGGTCACAAACATCTGGTTGAGTATCTTTACAATCACACACCTCT 539
Query 540 CAGTGATCTTGATCCTTGTGATGATTCAGATGAACACAAGGGCAAGAACGGAGCGATGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGTGATCTTGATCCTTGTGATGATTCAGATGAACACAAGGGCAAGAACGGAGCGATGCT 599
Query 600 CGTGACAAATTGTATTGTCGATGGATTATATTGTATTGCTTTGGATCTGATTCAGAGGTA 659
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CGTGACAAATTGTATTGTAGATGGATTATATGGTATTGCTTTGGATCTGATTCAGAGGTA 659
Query 660 TCCTAAGTTGGCTTATACTCGAGACAGTGATAACGATACAGCGATCATGGCGCTTGCTCA 719
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 660 TCCTAAGTTGGCTTATACTCGAGACAGCGATAACGATACAGCGATTATCGCGCTTGCTCA 719
Query 720 AACACCTTATGCGTTTCCTAGCGTTCCACGCATAATTAGACGTGTATACAAACTAAAGCT 779
||| ||| ||||||| || || ||||||| |||||||||||||||||||||||| |||||
Sbjct 720 AACGCCTCATGCGTTCCCCAGTGTTCCACACATAATTAGACGTGTATACAAACTGAAGCT 779
Query 780 AGGACATGCTCAAGCTAAAGAAATACTAGACTGTATCTGTCAAGAGATACCTAAATTTGA 839
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 780 AGGACATGCTCAAGCCAAAGAAATACTAGACTGTATCTGCCAAGAGATACCAAAATTTGA 839
Query 840 CGCGGCTCAACAAAAGAACGCTGGTCTAAACCAAGCTCTCTTTAAGGCGGTAGAGAATGG 899
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 CGCGGCCCAACAGAAGAACGCTGGCCTAAACCAAGCTCTCTTTAAGGCGGTAGAGAATGG 899
Query 900 AATCGTAGAGTATATCGAGGAAATGATGAGGCATTATCCTGATATCGTATGGTCCAAAAA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 900 TATCGTAGAGTATATCGAGGAAATGATGAGGCATTATCCTGATATCGTATGGTTCAAAGA 959
Query 960 TAGT-AGTGGTCTTAACATCTTCTTCTACGCGGTAAGCCAGAGACAAGAAAAGATCTTTA 1018
|| | | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 TAATTA-TGGTCTTAACCTCTTCTTCTACGCGGTAAGCCAGAGACAAGAGAAGATCTTTA 1018
Query 1019 GCCTCATTTACAATATAGGTGCTAAGAAGAACATCCTCGCTACAAATTGGGACATATTCC 1078
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1019 GCCTCATTTACAATATGGGTGCTAAGAAGAACATCCTCGCTACAAATTGGGACAAACTCC 1078
Query 1079 ATAACAATATGCTTCATCACGCCGCGTATAGAGCCCCAGCCTCAAGGCTTAATCTCATTC 1138
||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||
Sbjct 1079 ATAACAATATGCTTCATCATGCCGCTTATCGAGCCCCAGCCTCACGGCTTAATCTCATTC 1138
Query 1139 CTGGTGCAGCTCTTCAGATGCAAAGGGAACTACAATGGTTTAAGGAAGTGGAGAAGTTAG 1198
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1139 CTGGTGCAGCTCTTCAGATGCAAAGGGAACTACAATGGTTCAAGGAAGTGGAGAGGTTAG 1198
Query 1199 TGCAACCGAAGCATCGAAAAATGGTTAACTTGAAGCAGAAGAAAACTCCAAAGGCTCTGT 1258
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGCAACCGAAGCATCGGAAAATGGTTAACTTGAAGCAGAAGAAAACTCCAAAGGCTCTGT 1258
Query 1259 TTACAGACCAACACAAGGATCTCGTGGAGCAAGGAGAGAAATGGATGAAAGAAACAGCAA 1318
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTACAGACCAACACAAGGACCTCGTGGAGCAAGGAGAGAAATGGATGAAAGAAACAGCAG 1318
Query 1319 CTTCTTGCACAGTCGTTGCCGCTCTAATCACCACAATGATGTTTTCCTCCGCCTTTACTG 1378
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1319 CTTCTTGCACAGTCGTAGCCGCTCTAATCACCACAATGATGTTTTCCTCGGCGTTTACTG 1378
Query 1379 TCCCCGGAGGTTACCGTTCAGACGGCATGCCACTCTACATCCACCAGCACA-GATTTAAG 1437
|||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||
Sbjct 1379 TCCCCGGAGGTTACCGTTCAGATGGCATGCCACTCTACATCCACAAGCACATG-TTTAAG 1437
Query 1438 ATATTCCTCATCTCCGACGCTATCTCTCTTTTCACCTCATGTATGTCTCTCCTCATGTTC 1497
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 ATTTTCCTCATCTCCGACGCTATCTCTCTTTTCACATCATGTATGTCTCTCCTCATGTTC 1497
Query 1498 CTCGGCATTCTCAAGTCTCGCTACCGTGAAGAGGATTTTCTTCGATCACTTCCGACAAAA 1557
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1498 CTCGGCATTCTCAAGTCTCGCTACCGTGAAGAGGACTTTCTTCGATCACTTCCGACAAAA 1557
Query 1558 CTGATCGTGGGTCTTTTGGCTTTGTTTCTTTCGATGGCGACGATGATTGTGACTTTTGTC 1617
||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1558 CTGATCGTGGGTCTTTTTTCTTTGTTTCTGTCGATGGCGACAATGATGGTGACTTTTGTC 1617
Query 1618 GTGACGCTCATGACTCTGGTTGGAGAGAAAATCTCGTGGGTTTCGGCTCAATTTATGTTT 1677
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GTGACACTCATGACTTTGGTTGGAGAGAAAATCTCGTGGGTTTCGGCTCAATTTATGTTT 1677
Query 1678 CTTGCGGTGATTCCGCTGGGGATGTTCGTTGTCCTTCAGTTTCCGGTGTTACTTGAGATC 1737
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1678 CTTGCGGTGATTCCGCTGGGGATGTTCGTTGTTCTTCAGTTTCCGGTTTTACTTGAGATC 1737
Query 1738 TTCCGCGCCACTTATTGTCC-TA-ACGTTTTTGATAAACCTC 1777
||| || | ||||||| ||| || | ||||||||||| ||||
Sbjct 1738 TTCTGCTCGACTTATT-TCCCTAGA-GTTTTTGATAAGCCTC 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5