BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18680.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929752 jgi|Araly1|929752|scaffold_302209.1 1620 0.0
Ahg929750 jgi|Araly1|929750|scaffold_302207.1 1620 0.0
> Ahg929752 jgi|Araly1|929752|scaffold_302209.1
Length=1048
Score = 1620 bits (877), Expect = 0.0
Identities = 1008/1068 (94%), Gaps = 22/1068 (2%)
Strand=Plus/Plus
Query 108 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTTACCTCTTGCTCCCCAA 167
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTCACCTCTTGCTCGCCAA 60
Query 168 TCTCAACTTCTTCGTCTATTTCCCGAACCTCCTTCGTCCCTCTTACACTTCGCAATCGTA 227
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 61 TCTCAACTTCTTCTTCTATTTCCCGAACCTCCTTCGTCCCTCTCACACCTCGCAATCGTA 120
Query 228 CTTTCTTCTCCAACCAGAATTACAGTAGGCGTGTACTTATCAGCTGCTCTTCTTCTTTGT 287
||||||||||||||||||||| ||| |||||||||||||||||||| | ||||| |
Sbjct 121 CTTTCTTCTCCAACCAGAATTGCAGCAGGCGTGTACTTATCAGCTG--C-TCTTC----T 173
Query 288 CCTCAGACAATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGTA 347
||||||||||||||||||||||| ||||||||||| || | ||||||||||||||
Sbjct 174 --TCAGACAATGGTTCATCTCCAGATTCCATGAACGG-AA---G--CGGGAACGGGAGTA 225
Query 348 GCTTAAACGGGCA-ATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCA 406
||||||||||||| | ||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 226 GCTTAAACGGGCAGA-CATCTTTTCCACGAATGCCTTCCTTTGATGGAGCATCCAAACCA 284
Query 407 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 344
Query 467 GAGCAAAATATCGACCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 526
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GAACAAAATATCGATCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 404
Query 527 CGACTTGGCATTGAGGTTGCTATAGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 586
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 405 CGACTTGGCATTGAGGTTGCAATTGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 464
Query 587 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATCGGGATGCTGGCAACT 646
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 465 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATTGGGATGCTGGCAACT 524
Query 647 GTGATGAATGCAATATTTCTTCAAGCGACAATGGAGAGTATTGGCATCCCAACCCGTGTT 706
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 525 GTGATGAATGCAATATTTCTTCAAGCAACAATGGAGAGTATTGGCATCCCAACCCGTGTT 584
Query 707 CAAACTGCTTTCCGCATGTCGGAAGTCGCAGAGCCTTACATAAGAAGACGAGCAATCAGA 766
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 585 CAAACCGCTTTCCGCATGTCAGAAGTAGCAGAGCCTTACATAAGAAGACGAGCAATTAGG 644
Query 767 CATCTAGAAAAAGGAAGGGTTGTAATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 826
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 645 CATCTAGAAAAAGGAAGGGTTGTTATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 704
Query 827 ACCGATACTGCAGCGGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 886
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ACCGATACTGCAGCAGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 764
Query 887 ACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTT 946
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 765 ACAAATGTTGATGGAGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGCCTTCTC 824
Query 947 GACTCACTAACTTACCAAGAGGTCACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 1006
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 825 GACTCACTAACTTACCAAGAAGTAACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 884
Query 1007 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTTTCGGAACCTGGG 1066
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 885 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTATCGGAACCTGGA 944
Query 1067 AACATCGCCAAAGCAATCAAAGGAGAGAGAGTTGGTACATTGATAGGAGGAACTTGGAAC 1126
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 945 AACATCGCAAAAGCAATCAAAGGAGAGAGAGTCGGTACATTGATAGGAGGAACTTGGAAC 1004
Query 1127 TCCATTGTTACAACAACCT-CATGAAGAAGCCTATTCTCAAAACACAA 1173
|| ||||||||||| || | ||||||| | | | | ||||||||||||
Sbjct 1005 TCTATTGTTACAACTAC-TACATGAAGGATC-T-T-CTCAAAACACAA 1048
> Ahg929750 jgi|Araly1|929750|scaffold_302207.1
Length=1048
Score = 1620 bits (877), Expect = 0.0
Identities = 1008/1068 (94%), Gaps = 22/1068 (2%)
Strand=Plus/Plus
Query 108 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTTACCTCTTGCTCCCCAA 167
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTCACCTCTTGCTCGCCAA 60
Query 168 TCTCAACTTCTTCGTCTATTTCCCGAACCTCCTTCGTCCCTCTTACACTTCGCAATCGTA 227
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 61 TCTCAACTTCTTCTTCTATTTCCCGAACCTCCTTCGTCCCTCTCACACCTCGCAATCGTA 120
Query 228 CTTTCTTCTCCAACCAGAATTACAGTAGGCGTGTACTTATCAGCTGCTCTTCTTCTTTGT 287
||||||||||||||||||||| ||| |||||||||||||||||||| | ||||| |
Sbjct 121 CTTTCTTCTCCAACCAGAATTGCAGCAGGCGTGTACTTATCAGCTG--C-TCTTC----T 173
Query 288 CCTCAGACAATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGTA 347
||||||||||||||||||||||| ||||||||||| || | ||||||||||||||
Sbjct 174 --TCAGACAATGGTTCATCTCCAGATTCCATGAACGG-AA---G--CGGGAACGGGAGTA 225
Query 348 GCTTAAACGGGCA-ATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCA 406
||||||||||||| | ||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 226 GCTTAAACGGGCAGA-CATCTTTTCCACGAATGCCTTCCTTTGATGGAGCATCCAAACCA 284
Query 407 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 344
Query 467 GAGCAAAATATCGACCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 526
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GAACAAAATATCGATCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 404
Query 527 CGACTTGGCATTGAGGTTGCTATAGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 586
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 405 CGACTTGGCATTGAGGTTGCAATTGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 464
Query 587 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATCGGGATGCTGGCAACT 646
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 465 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATTGGGATGCTGGCAACT 524
Query 647 GTGATGAATGCAATATTTCTTCAAGCGACAATGGAGAGTATTGGCATCCCAACCCGTGTT 706
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 525 GTGATGAATGCAATATTTCTTCAAGCAACAATGGAGAGTATTGGCATCCCAACCCGTGTT 584
Query 707 CAAACTGCTTTCCGCATGTCGGAAGTCGCAGAGCCTTACATAAGAAGACGAGCAATCAGA 766
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 585 CAAACCGCTTTCCGCATGTCAGAAGTAGCAGAGCCTTACATAAGAAGACGAGCAATTAGG 644
Query 767 CATCTAGAAAAAGGAAGGGTTGTAATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 826
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 645 CATCTAGAAAAAGGAAGGGTTGTTATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 704
Query 827 ACCGATACTGCAGCGGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 886
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ACCGATACTGCAGCAGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 764
Query 887 ACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTT 946
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 765 ACAAATGTTGATGGAGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGCCTTCTC 824
Query 947 GACTCACTAACTTACCAAGAGGTCACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 1006
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 825 GACTCACTAACTTACCAAGAAGTAACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 884
Query 1007 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTTTCGGAACCTGGG 1066
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 885 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTATCGGAACCTGGA 944
Query 1067 AACATCGCCAAAGCAATCAAAGGAGAGAGAGTTGGTACATTGATAGGAGGAACTTGGAAC 1126
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 945 AACATCGCAAAAGCAATCAAAGGAGAGAGAGTCGGTACATTGATAGGAGGAACTTGGAAC 1004
Query 1127 TCCATTGTTACAACAACCT-CATGAAGAAGCCTATTCTCAAAACACAA 1173
|| ||||||||||| || | ||||||| | | | | ||||||||||||
Sbjct 1005 TCTATTGTTACAACTAC-TACATGAAGGATC-T-T-CTCAAAACACAA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5