BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18680.1 Length=1322 Score E Sequences producing significant alignments: (Bits) Value Ahg929752 jgi|Araly1|929752|scaffold_302209.1 1620 0.0 Ahg929750 jgi|Araly1|929750|scaffold_302207.1 1620 0.0 > Ahg929752 jgi|Araly1|929752|scaffold_302209.1 Length=1048 Score = 1620 bits (877), Expect = 0.0 Identities = 1008/1068 (94%), Gaps = 22/1068 (2%) Strand=Plus/Plus Query 108 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTTACCTCTTGCTCCCCAA 167 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTCACCTCTTGCTCGCCAA 60 Query 168 TCTCAACTTCTTCGTCTATTTCCCGAACCTCCTTCGTCCCTCTTACACTTCGCAATCGTA 227 ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 61 TCTCAACTTCTTCTTCTATTTCCCGAACCTCCTTCGTCCCTCTCACACCTCGCAATCGTA 120 Query 228 CTTTCTTCTCCAACCAGAATTACAGTAGGCGTGTACTTATCAGCTGCTCTTCTTCTTTGT 287 ||||||||||||||||||||| ||| |||||||||||||||||||| | ||||| | Sbjct 121 CTTTCTTCTCCAACCAGAATTGCAGCAGGCGTGTACTTATCAGCTG--C-TCTTC----T 173 Query 288 CCTCAGACAATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGTA 347 ||||||||||||||||||||||| ||||||||||| || | |||||||||||||| Sbjct 174 --TCAGACAATGGTTCATCTCCAGATTCCATGAACGG-AA---G--CGGGAACGGGAGTA 225 Query 348 GCTTAAACGGGCA-ATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCA 406 ||||||||||||| | ||||||| |||||| ||||||||||||||||| ||||||||||| Sbjct 226 GCTTAAACGGGCAGA-CATCTTTTCCACGAATGCCTTCCTTTGATGGAGCATCCAAACCA 284 Query 407 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 344 Query 467 GAGCAAAATATCGACCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 526 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 GAACAAAATATCGATCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 404 Query 527 CGACTTGGCATTGAGGTTGCTATAGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 586 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 405 CGACTTGGCATTGAGGTTGCAATTGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 464 Query 587 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATCGGGATGCTGGCAACT 646 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 465 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATTGGGATGCTGGCAACT 524 Query 647 GTGATGAATGCAATATTTCTTCAAGCGACAATGGAGAGTATTGGCATCCCAACCCGTGTT 706 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 525 GTGATGAATGCAATATTTCTTCAAGCAACAATGGAGAGTATTGGCATCCCAACCCGTGTT 584 Query 707 CAAACTGCTTTCCGCATGTCGGAAGTCGCAGAGCCTTACATAAGAAGACGAGCAATCAGA 766 ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 585 CAAACCGCTTTCCGCATGTCAGAAGTAGCAGAGCCTTACATAAGAAGACGAGCAATTAGG 644 Query 767 CATCTAGAAAAAGGAAGGGTTGTAATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 826 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 645 CATCTAGAAAAAGGAAGGGTTGTTATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 704 Query 827 ACCGATACTGCAGCGGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 886 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 ACCGATACTGCAGCAGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 764 Query 887 ACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTT 946 |||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 765 ACAAATGTTGATGGAGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGCCTTCTC 824 Query 947 GACTCACTAACTTACCAAGAGGTCACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 1006 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 825 GACTCACTAACTTACCAAGAAGTAACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 884 Query 1007 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTTTCGGAACCTGGG 1066 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 885 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTATCGGAACCTGGA 944 Query 1067 AACATCGCCAAAGCAATCAAAGGAGAGAGAGTTGGTACATTGATAGGAGGAACTTGGAAC 1126 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 945 AACATCGCAAAAGCAATCAAAGGAGAGAGAGTCGGTACATTGATAGGAGGAACTTGGAAC 1004 Query 1127 TCCATTGTTACAACAACCT-CATGAAGAAGCCTATTCTCAAAACACAA 1173 || ||||||||||| || | ||||||| | | | | |||||||||||| Sbjct 1005 TCTATTGTTACAACTAC-TACATGAAGGATC-T-T-CTCAAAACACAA 1048 > Ahg929750 jgi|Araly1|929750|scaffold_302207.1 Length=1048 Score = 1620 bits (877), Expect = 0.0 Identities = 1008/1068 (94%), Gaps = 22/1068 (2%) Strand=Plus/Plus Query 108 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTTACCTCTTGCTCCCCAA 167 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTCACCTCTTGCTCGCCAA 60 Query 168 TCTCAACTTCTTCGTCTATTTCCCGAACCTCCTTCGTCCCTCTTACACTTCGCAATCGTA 227 ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 61 TCTCAACTTCTTCTTCTATTTCCCGAACCTCCTTCGTCCCTCTCACACCTCGCAATCGTA 120 Query 228 CTTTCTTCTCCAACCAGAATTACAGTAGGCGTGTACTTATCAGCTGCTCTTCTTCTTTGT 287 ||||||||||||||||||||| ||| |||||||||||||||||||| | ||||| | Sbjct 121 CTTTCTTCTCCAACCAGAATTGCAGCAGGCGTGTACTTATCAGCTG--C-TCTTC----T 173 Query 288 CCTCAGACAATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGTA 347 ||||||||||||||||||||||| ||||||||||| || | |||||||||||||| Sbjct 174 --TCAGACAATGGTTCATCTCCAGATTCCATGAACGG-AA---G--CGGGAACGGGAGTA 225 Query 348 GCTTAAACGGGCA-ATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCA 406 ||||||||||||| | ||||||| |||||| ||||||||||||||||| ||||||||||| Sbjct 226 GCTTAAACGGGCAGA-CATCTTTTCCACGAATGCCTTCCTTTGATGGAGCATCCAAACCA 284 Query 407 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 344 Query 467 GAGCAAAATATCGACCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 526 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 GAACAAAATATCGATCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 404 Query 527 CGACTTGGCATTGAGGTTGCTATAGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 586 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 405 CGACTTGGCATTGAGGTTGCAATTGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 464 Query 587 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATCGGGATGCTGGCAACT 646 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 465 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATTGGGATGCTGGCAACT 524 Query 647 GTGATGAATGCAATATTTCTTCAAGCGACAATGGAGAGTATTGGCATCCCAACCCGTGTT 706 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 525 GTGATGAATGCAATATTTCTTCAAGCAACAATGGAGAGTATTGGCATCCCAACCCGTGTT 584 Query 707 CAAACTGCTTTCCGCATGTCGGAAGTCGCAGAGCCTTACATAAGAAGACGAGCAATCAGA 766 ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 585 CAAACCGCTTTCCGCATGTCAGAAGTAGCAGAGCCTTACATAAGAAGACGAGCAATTAGG 644 Query 767 CATCTAGAAAAAGGAAGGGTTGTAATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 826 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 645 CATCTAGAAAAAGGAAGGGTTGTTATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 704 Query 827 ACCGATACTGCAGCGGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 886 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 ACCGATACTGCAGCAGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 764 Query 887 ACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTT 946 |||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 765 ACAAATGTTGATGGAGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGCCTTCTC 824 Query 947 GACTCACTAACTTACCAAGAGGTCACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 1006 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 825 GACTCACTAACTTACCAAGAAGTAACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 884 Query 1007 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTTTCGGAACCTGGG 1066 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 885 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTATCGGAACCTGGA 944 Query 1067 AACATCGCCAAAGCAATCAAAGGAGAGAGAGTTGGTACATTGATAGGAGGAACTTGGAAC 1126 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 945 AACATCGCAAAAGCAATCAAAGGAGAGAGAGTCGGTACATTGATAGGAGGAACTTGGAAC 1004 Query 1127 TCCATTGTTACAACAACCT-CATGAAGAAGCCTATTCTCAAAACACAA 1173 || ||||||||||| || | ||||||| | | | | |||||||||||| Sbjct 1005 TCTATTGTTACAACTAC-TACATGAAGGATC-T-T-CTCAAAACACAA 1048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49445423349 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5