BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18690.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929753 jgi|Araly1|929753|scaffold_302210.1 968 0.0
Ahg929751 jgi|Araly1|929751|scaffold_302208.1 963 0.0
> Ahg929753 jgi|Araly1|929753|scaffold_302210.1
Length=691
Score = 968 bits (524), Expect = 0.0
Identities = 619/662 (94%), Gaps = 17/662 (3%)
Strand=Plus/Plus
Query 92 ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCCGATCAACAGAACCAGAAGCGG 151
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 21 ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCTGACCAACAGAACCAGAAGCGG 80
Query 152 CAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTTCACAAAGACTCTCACAAA 211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 81 CAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTCCACAAAGACTCTCACAAA 140
Query 212 ATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCGCCGCCGTAT 271
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 ATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCTCCGCCGTAT 200
Query 272 ATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCAACCGCG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 201 ATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCCACCGCG 260
Query 332 TCTGAGTTCATGAACGTAGTCCAGCGACTCACAGGGATCTCCTCTGGTGTTTTCCTCGAA 391
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 261 TCGGAGTTCATGAACGTCGTCCAGCGACTCACAGGGATCTCCTCTGGAGTTTTCCTCGAA 320
Query 392 TCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCCACGGAAAATGCTAGT 451
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 321 TCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCGACGGAGAATGCTAGT 380
Query 452 CCAAGAGGAGGAAAAGAACCGGCTGCGAGAGATGAGACGGTGGAAATCAACACGGCTATG 511
|||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||
Sbjct 381 CCAAGAGGAGGAAAAGAACCGGCTGCGAGAAATGAGACGGTAGAAATCA-C-----TATG 434
Query 512 GAAGAAGCAGCTGAATTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCCTTG 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 435 GAAGAAGCAGCTGAATTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCGATG 494
Query 572 TT-GCCAACAGCTTCTACCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTC 630
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTAGC-AACAGCTTCTGCCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTC 553
Query 631 GCCGGCTATACCACTGGGATTATTCTCGCCGGCGGGATTTATGAGCCCGTTTCGAAGTCC 690
|||||||||||||| |||||||||||||||||||||||| ||| | | | ||||
Sbjct 554 GCCGGCTATACCACCGGGATTATTCTCGCCGGCGGGATTAATG------TAT--A-GTCC 604
Query 691 TGGCTTTACTAGTTTGGTAGCTTCACCAACTTTTGCTGATTTCTTTAGTCATATTTGGGA 750
||| ||| |||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||
Sbjct 605 TGGTTTTGCTAGTTTGGTCGCTTCTCCAACATTTGCTGATGTCTTTAGAAATATTTGGGA 664
Query 751 TC 752
||
Sbjct 665 TC 666
> Ahg929751 jgi|Araly1|929751|scaffold_302208.1
Length=691
Score = 963 bits (521), Expect = 0.0
Identities = 618/662 (93%), Gaps = 17/662 (3%)
Strand=Plus/Plus
Query 92 ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCCGATCAACAGAACCAGAAGCGG 151
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 21 ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCTGACCAACAGAACCAGAAGCGG 80
Query 152 CAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTTCACAAAGACTCTCACAAA 211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 81 CAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTCCACAAAGACTCTCACAAA 140
Query 212 ATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCGCCGCCGTAT 271
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 ATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCTCCGCCGTAT 200
Query 272 ATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCAACCGCG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 201 ATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCCACCGCG 260
Query 332 TCTGAGTTCATGAACGTAGTCCAGCGACTCACAGGGATCTCCTCTGGTGTTTTCCTCGAA 391
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 261 TCGGAGTTCATGAACGTCGTCCAGCGACTCACAGGGATCTCCTCTGGAGTTTTCCTCGAA 320
Query 392 TCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCCACGGAAAATGCTAGT 451
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 321 TCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCGACGGAGAATGCTAGT 380
Query 452 CCAAGAGGAGGAAAAGAACCGGCTGCGAGAGATGAGACGGTGGAAATCAACACGGCTATG 511
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 381 CCAAGAGGAGGAAAAGAACCGGCGGCGAGAGATGAGACGGTGGAAATCA-C-----TATG 434
Query 512 GAAGAAGCAGCTGAATTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCCTTG 571
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 435 GAAGAAGCAGCTGAGTTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCGATG 494
Query 572 TT-GCCAACAGCTTCTACCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTC 630
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTAGC-AACAGCTTCTGCCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTC 553
Query 631 GCCGGCTATACCACTGGGATTATTCTCGCCGGCGGGATTTATGAGCCCGTTTCGAAGTCC 690
|||||||||||||| |||||||||||||||||||||||| ||| | | | ||||
Sbjct 554 GCCGGCTATACCACCGGGATTATTCTCGCCGGCGGGATTAATG------TAT--A-GTCC 604
Query 691 TGGCTTTACTAGTTTGGTAGCTTCACCAACTTTTGCTGATTTCTTTAGTCATATTTGGGA 750
||| ||| |||||||||| ||||| ||||| ||||||||| ||||||| |||| |||||
Sbjct 605 TGGTTTTGCTAGTTTGGTCGCTTCTCCAACATTTGCTGATGTCTTTAGAAATATCTGGGA 664
Query 751 TC 752
||
Sbjct 665 TC 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5