BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18710.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479377 jgi|Araly1|479377|fgenesh2_kg.3__2078__AT3G18710.1 1624 0.0
> Ahg479377 jgi|Araly1|479377|fgenesh2_kg.3__2078__AT3G18710.1
Length=1355
Score = 1624 bits (879), Expect = 0.0
Identities = 1233/1393 (89%), Gaps = 68/1393 (5%)
Strand=Plus/Plus
Query 81 ATGGGGAGAGATGAAACAGAGACGTACATTACAGTGCCAAGTTTCTTCAAATGTCCGATA 140
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1 ATGGGGAGAGATGAAACTGAGACGTACATTACAGTGCCTAGTTTCTTTAAATGTCCTATA 60
Query 141 TCTCTTGACGTGATGAGATCTCCGGTTAGTCTCTGTACCGGCGTGACTTATGATCGAGCC 200
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTAGACGTAATGAGATCTCCGGTTAGTCTCTGTACCGGCGTGACTTATGATCGAGCC 120
Query 201 AGTATCCAGAGATGGCTCGATGGTGGTAACAACACTTGTCCCGCTACTATGCAACTTCTC 260
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTATTCAGAGATGGCTCGATGGTGGTAACAACACTTGTCCCGCTACTATGCAACTTCTC 180
Query 261 AAAACTAAAGATTTTGTTCCTAACCTCACTCTTCAACGTCTTATCAATATCTGGTCTGAT 320
|||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 181 AAAACTAAGGATTTTGTTCCTAACCTCACGCTTCAACGCCTTATCAAAATCTGGTCTGAT 240
Query 321 TCAATCGGCCGTCGTCACAACGGTGATTCTCCGGTTCTGAATCCGCCGTCTGGTAGAGAA 380
|| |||||||| | ||||| | | | |||||| || |||||||||||||||
Sbjct 241 TCCCTCGGCCGT--T-ACAAC----A-CCGCTGGTTCT-CCGCCACCGTCTGGTAGAGAA 291
Query 381 GTTCCGACGAAGGAAGAAGTGAATGTGTTGTTGGAGAGATTGATGAGTCTGGAG----A- 435
||||||||| |||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 292 GTTCCGACGGTTGAAGAAGTGAATGTGTTGCTGAAGAGATTGCTGAGTCTGGAGAAAAAC 351
Query 436 -AT----TT--GA-T--GA--------A-GATCGTTCGATTCGTGAAGGATTCGGATTCG 476
|| || || | || | |||||||||||||||||||||||||||||||
Sbjct 352 GATGAGATTCGGATTGAGATTTTGTCCAGGATCGTTCGATTCGTGAAGGATTCGGATTCG 411
Query 477 AACAGAGAGTTTCTCTCGAAGAAGATGGAGTTCGTACCAATGCTCGTTGATATTATACGC 536
|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct 412 AACAGAGAGTTTCTCTCGGCCAAGAAGGAGTTCGTACCAATGCTCGTCGATATTATACGC 471
Query 537 ACGAAGAAGACGAAGATCGAGTTAGTTATAATGGCGATTAGGATTTTGGATTCGATTAAA 596
||||||| || |||||||||||||| | ||||||||||||||||||||||| || |||||
Sbjct 472 ACGAAGACGAAGAAGATCGAGTTAGCTCTAATGGCGATTAGGATTTTGGATACGGTTAAA 531
Query 597 GTAGATCGTGAACGGTTATCGAATCTGATGTTGGCGAATGACGGCGGAGATTGTTTAACG 656
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 GGAGATCGTGAACGGTTATCGAATCTGATGTTGGCGAATGACGACGGAGATTGTTTAACG 591
Query 657 GCGATTCTCTTAGCGATTCAACGCGGGAATCTGGAATCGAAGATCGAATCGGTTCGGGTT 716
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 592 GCGATTCTCTTAGCGATTCAACGCGGGAATCTGGAATCGAAGATTGAATCCGTTAGGGTT 651
Query 717 TTGGATTGGATCTCCTTCGACGCTAAATCAAAGCT-TATGATAGCAGAACGTGACGG-AG 774
|||||||||||||| ||||||| |||||| ||||| | | || |||||||||||||| |
Sbjct 652 TTGGATTGGATCTCATTCGACGTTAAATCGAAGCTCT-TAATCGCAGAACGTGACGGGA- 709
Query 775 TTTTAACAGAGATGATGAAATCGATAAGTATCACTGAGTCGTCAGATCCGAGTTTGATCG 834
|||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 710 TTTTAACAGAGATGATCAAATCAATCAGTATCACTGAGTC---AGATCCGAGTTTGATCG 766
Query 835 AAGCGAGTTTATCGTTTCTAATCACAATCTCCAAATCAAAACGAGTGAGATCGAAACTAA 894
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 767 AAGCGACTTTATCGTTTCTAATCACAATCGCCAAATCCAAACGAGTGAGATCGAAACTAA 826
Query 895 TCGCTGC-AAAAGCAATCACGAAGATCAAAGACATTCTTCTGACGGAGACGTTAACAAAC 953
||| ||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 827 TCGTTGCGAAAA-CAATCGCGAAGATCAAAGACATTCTTCTCACGGAGACGTTAACAAAC 885
Query 954 GTTGCCGTGACGGAGAAGTCGT-TGAAGCTGTTAGAGACTTTATCGTCAAAGCGAGAAGG 1012
|| ||||| ||||||||||| | ||||||||||||||||| | ||||| |||||||||||
Sbjct 886 GTCGCCGTCACGGAGAAGTC-TCTGAAGCTGTTAGAGACTCTGTCGTCGAAGCGAGAAGG 944
Query 1013 GAGATTGGAGATTTGTGGAGACGACAATGGTAGATGTGTGGAAGGAGTGGTGAAGAAGCT 1072
|||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 945 AAGATTGGAGATTTGCGGAGAAGATAATGGAAGATGTGTGGAAGGAGTGGTGAAGAAGCT 1004
Query 1073 CTTGAAAGTATCGACGACGGCGACGGAACACGCCGTGACGATTTTGTGGTGTTTGTGTTA 1132
||||||||||| || || ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1005 GTTGAAAGTATCTACAACAGCGACGGAATACGCCGTGACGATTCTGTGGTGTTTGTGTTA 1064
Query 1133 TGTTTTCAGGGAAGATAAGACGGTGGAAGAGACGGTGGAGAGAAGTAACGGAGTTACGAA 1192
||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||| |||||
Sbjct 1065 TGTTTTCCGGGAAGATAAGACGGCGGAGGAGACGGTGGAGAGAAGTAATGGAGTGACGAA 1124
Query 1193 GCTGTTAGTGGTGATACAGAGCAATTGTTCGGCGATGGTTAGACAAATGGCGAAAGATTT 1252
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 1125 ACTGTTAGTGGTGATACAGAGCAACTGCTCGGCGATGGTGAGACAAATGGCGAAAGATCT 1184
Query 1253 GATTAAAGTGTTGAAGTTTAATTCCTCTGCTTTGGCTGCTTACGAGACCAAGACTACTCA 1312
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 1185 GATTAAAGTGTTGAAGATTAATTCATCTGCTTTGTCTGCTTACGAGACCAAGACCACTCA 1244
Query 1313 TATTATGCCtttttgattttttA-GTAGTACATTATGAATAAATATGATATAAGTAAATC 1371
|||||||||||||||||| |||| | | |||| | | ||| | || | || | |
Sbjct 1245 TATTATGCCTTTTTGATTATTTATG-A-TACA--A-G--TAA-T-TG-T-TA--T----C 1287
Query 1372 TTATTATCAAACTATTTTGAACGTA-TAGATGTTGTAAATCTTATGAGAAATTTTGTCAG 1430
|| ||||||||||||||| || || |||||||||||| || ||||||||||||||
Sbjct 1288 --AT---CAAACTATTTTGAACTTAGTACATGTTGTAAATCATAAGAGAAATTTTGTCAA 1342
Query 1431 TTTTACTAATATT 1443
|||||||||||||
Sbjct 1343 TTTTACTAATATT 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5