BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18715.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929757 jgi|Araly1|929757|scaffold_302214.1 401 1e-111
> Ahg929757 jgi|Araly1|929757|scaffold_302214.1
Length=319
Score = 401 bits (217), Expect = 1e-111
Identities = 261/282 (93%), Gaps = 3/282 (1%)
Strand=Plus/Plus
Query 1 ATGTATCCTACACGTCCACATTATTGGAGAAGAAGATTATCAATAAACCGGCCACAAGCT 60
|||||||||||| |||||||| ||||||||| |||||||| |||||| | ||| |||
Sbjct 21 ATGTATCCTACAAGTCCACATCATTGGAGAAAAAGATTATTAATAAA-C--AAACACGCT 77
Query 61 TTTCTTCTTTTGATTCTCTGCCTCTTCTTCATTCACCACTGCGACGCCTCGAGATTCTCG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 CTTCTTCTTTTGATTCTCTGCCTCTTCTTCATTCACCACTGCGACGCCTCGAGATTCTCG 137
Query 121 TCATCAAGCGTTTTCTACAGAAACCCTAATTATGATCATAGCAATAACACGGTGCGGAGA 180
|||||||||||||||||||||||||||||||||||||| | ||||||| || || |||||
Sbjct 138 TCATCAAGCGTTTTCTACAGAAACCCTAATTATGATCACAACAATAACTCGATGAGGAGA 197
Query 181 GGCCATTTCTTAGGATTCTTGCCAAGACATTTACCTGTTCCAGCTTCTGCTCCTTCACGA 240
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 198 GGCCATTTCTTAGGATTCTTGCCAAGACACTTGCCAGTTCCAGCTTCTGCTCCTTCACGA 257
Query 241 AAACACAACGACATTGGTATTCAAGCCTTGTTGTCTCCTTGA 282
|||||||||||| ||||||||||||||||||||||||| |||
Sbjct 258 AAACACAACGACGTTGGTATTCAAGCCTTGTTGTCTCCATGA 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5