BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18720.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929758 jgi|Araly1|929758|scaffold_302215.1 363 2e-99
> Ahg929758 jgi|Araly1|929758|scaffold_302215.1
Length=878
Score = 363 bits (196), Expect = 2e-99
Identities = 427/534 (80%), Gaps = 34/534 (6%)
Strand=Plus/Plus
Query 553 CCGCTCCCACATCAACTAGTTGTTGCGTCATATCCTTCACCCCTCAA-AGTTTTCTTTAC 611
|||||||||||||| ||||||||||||| || |||||| ||| |||| | || | ||
Sbjct 215 CCGCTCCCACATCAGCTAGTTGTTGCGTTATCTCCTTCGCCCATCAACAAAATT-TGGAC 273
Query 612 GCAGTTGTTAAAG-TTGATACTTGGCGCCCTGGTGAATCCGTATGGACCACTCATCACTT 670
| | ||||| | |||||||||||||||||||||| || ||||||||||||| || | |
Sbjct 274 GTATTTGTT-GTGCTTGATACTTGGCGCCCTGGTGATTCTGTATGGACCACTCGTCGC-T 331
Query 671 TGATCAAAAGC-G--TTACGGTGA-GGTAATCAAT-AGATG-TATCTTCTCCAATGGTAT 724
| || || | | ||| ||| | || || || | | ||| | |||||||||||||||
Sbjct 332 T--TCCGAATCGGTCTTATGGTTACGG-AA-CAGTAAAATGCCA-CTTCTCCAATGGTAT 386
Query 725 GTTCTATTGTCTCAGTACCAGTGGCCGCCTCTCGGTTTTCGA-CCCGTCTAGAGAAACCT 783
||||||||||||||||||||| ||| | || ||||||||| ||| ||| ||| |||||
Sbjct 387 GTTCTATTGTCTCAGTACCAGCGGCTACATCGGGGTTTTCGAGCCC-TCTGGAGCAACCT 445
Query 784 GGAATGTTCTTCCAGTGAAACCATGTCGGGCCTTT---CGTCGTAA--A--ATTATGCTT 836
||||| || ||||||| || || |||| | |||| |||||| | | || | |||
Sbjct 446 GGAATATTATTCCAGTCAACCCCTGTCCCGTCTTTAGTCGTCGTCATCACGATAA-GCTC 504
Query 837 GTGAGGCAAGTATTCATGACAGAGCATGAAGGAGACATCTT-TGTTGTGACTACACGCCG 895
||||||| ||| |||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct 505 GTGAGGCCAGTGTTCATGACAGAGCATGAAGGAGACAT-TTATGTTATGACTACACGCCG 563
Query 896 CGTAAACAACAGAAAACTGTTGGCCTTTAAACTAAACCTTCAAGGCAATGTGTGGGAAGA 955
| ||||||||| |||| ||||| |||||| |||||||| || ||||||| ||||||||
Sbjct 564 CAAAAACAACAGCAAACAGTTGGTGTTTAAATTAAACCTTGAACGCAATGTATGGGAAGA 623
Query 956 GATGAAAGTACCTAATGGCTTGACAGTATTTTCAAGTGACGCTACCTCTTTAACAAGAGC 1015
||||| || || | ||| |||||||||||| || || ||||| ||||||| ||||||||
Sbjct 624 GATGAGAGGACTTGGTGGATTGACAGTATTTGCATGTCACGCTGCCTCTTTGACAAGAGC 683
Query 1016 TGGTCT-TCCAGAGGAGGAGAGGAACAT--TCTATATTCATCGGATATCGATGA 1066
|||||| || || |||||||||||||| |||||| ||||| |||||| |||
Sbjct 684 TGGTCTCTC-AGCGGAGGAGAGGAACAGAATCTATA--CATCGCATATCGGTGA 734
Score = 198 bits (107), Expect = 7e-50
Identities = 147/165 (89%), Gaps = 8/165 (5%)
Strand=Plus/Plus
Query 32 TCCGCCGATCGCTGAATCCCTCACGGCGAGGTCCATTGTTCAGGCGCTTCCGGCGTCAGC 91
|||||||||| |||||| ||||||||||||| |||| ||||| |||||||| ||||||||
Sbjct 57 TCCGCCGATCCCTGAATTCCTCACGGCGAGGCCCATAGTTCAAGCGCTTCCAGCGTCAGC 116
Query 92 CACAATATCAGGAAATGGTGGACCAAAGAAGAAGAAGAACTGTGTTAAT-AGAGGATTGT 150
|||| |||||||||||||||| | || ||||||||||| || | || ||||||||||
Sbjct 117 GACAAGATCAGGAAATGGTGGATC--AG-AGAAGAAGAAC--TG-T-ATCAGAGGATTGT 169
Query 151 GGGATAAACAGATTCCGACGGATCTGCTGCAAGAGATACTGTCTC 195
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 170 GGGATAAAAAGATTCCGACGGATCTGCTGCAAGAGATACTGTCTC 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5