BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G18740.1

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479380 jgi|Araly1|479380|fgenesh2_kg.3__2081__AT3G18740.1         675    0.0  


> Ahg479380 jgi|Araly1|479380|fgenesh2_kg.3__2081__AT3G18740.1
Length=442

 Score =  675 bits (365),  Expect = 0.0
 Identities = 419/443 (95%), Gaps = 12/443 (3%)
 Strand=Plus/Plus

Query  67   AAAATGGTTGCGGAGAAGAAGGCGAAGAAGTCCCATGAAGGAATCAACAGCAGATTAGCT  126
            ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct  1    AAAATGGTTGCGGCGAAGAAGACGAAGAAGTCCCATGAGGGAATCAACAGCAGATTAGCT  60

Query  127  CTTGTGATGAAGAGTGGAAAGTACACTCTTGGATACAAGTCTGTTCTCAAATCCCTTCGC  186
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   CTTGTGATGAAGAGTGGAAAGTACACTCTTGGATACAAATCTGTTCTCAAATCCCTTCGC  120

Query  187  AGCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCGTTGAGAAGGTCAGAG  246
            |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct  121  AGCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCAGAG  180

Query  247  ATTGAATACTATGCGATGCTTGCTAAAGTTGGAGTTCATCGCTACAATGGCAACAATGTT  306
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  181  ATTGAATACTATGCCATGCTTGCTAAAGTTGGAGTTCATCACTACAATGGCAACAATGTT  240

Query  307  GATTTGGGTACTGCTTGTGGTAAATACTTCCGAGTTTCTTGCCTCAGCATCGTTGATCCT  366
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  241  GATTTGGGTACTGCTTGTGGTAAATACTTCCGAGTCTCTTGCCTCAGCATCGTTGATCCT  300

Query  367  GGTGATTCCGACATCATCAAGACACTTCCTGGAGATCAGTGATTCTGATTT-T------G  419
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| |      |
Sbjct  301  GGTGATTCCGACATCATCAAGGCACTTCCTGGAGATCAGTGATTCTGATTTGTTATCATG  360

Query  420  ATGATTTTGCCATGTTGTTCTCTATGCT--T--GATTATGCTTTGTGTTCTTCAAAGACT  475
            ||||||||||||||||||||||||||||  |  | |||||| ||||||||||||||||||
Sbjct  361  ATGATTTTGCCATGTTGTTCTCTATGCTGCTTTG-TTATGCATTGTGTTCTTCAAAGACT  419

Query  476  TAATGTTAGATTTCTTTGGTTTC  498
            |||||||||||||||||||||||
Sbjct  420  TAATGTTAGATTTCTTTGGTTTC  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20298773348


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5