BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18750.1
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318635 jgi|Araly1|318635|fgenesh1_pm.C_scaffold_3001651 2748 0.0
Ahg474058 jgi|Araly1|474058|fgenesh2_kg.1__4012__AT1G49160.2 1280 0.0
> Ahg318635 jgi|Araly1|318635|fgenesh1_pm.C_scaffold_3001651
Length=1716
Score = 2748 bits (1488), Expect = 0.0
Identities = 1642/1716 (96%), Gaps = 12/1716 (1%)
Strand=Plus/Plus
Query 120 ATGGAAGGTACAGATGATGCTTCTGCACTTCAAGAGCCTCCTGACCCCGAAGTGCTCGAA 179
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGTACAGACGATGCTTGTGCACTTCAAGAGCCTCCTGACCCCGAAGTGCTCGAA 60
Query 180 GTTGATCCAACTTTTCGATATATACGGTATAAAGAGGTCATTGGAAAAGGGGCATTCAAG 239
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 61 GTTGATCCAACTTTTCGATATATACGGTATAAGGAGGTTATTGGAAAAGGCGCATTCAAG 120
Query 240 AC--TG--------T--TTATAAGGCATTTGATGAAGTAGATGGAATTGAAGTCGCATGG 287
|| || | |||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 121 ACTGTGTATCCTTTTCGTTATAAGGCATTCGATGAAGTAGATGGGATTGAAGTCGCTTGG 180
Query 288 AACCAAGTACGGATAGATGATGTTTTGCAGTCACCGAATTGCCTGGAGAGGCTCTATTCT 347
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 181 AACCAAGTACGAATAGATGATGTTTTGCAGTCACCGAATTGCCTTGAGAGGCTGTATTCT 240
Query 348 GAAGTGCGTCTGTTGAAATCATTGAAGCACAATAATATTATTAGGTTCTATAATTCATGG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTGCGTCTGTTGAAATCATTGAAGCACAATAATATTATTAGGTTCTATAATTCATGG 300
Query 408 ATCGATGATAAGAACAAGACTGTTAACATAATAACTGAGCTATTCACTTCAGGGAGCCTC 467
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCGATGATAAGAACAAGACAGTTAACATAATAACTGAGCTATTCACTTCAGGGAGCCTC 360
Query 468 CGGCACTACCGCAAGAAACACAGGAAGGTGAACATGAAGGCCGTCAAGAATTGGGCGAGG 527
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CGACACTACCGCAAGAAACACAGGAAGGTGAACATGAAGGCCGTGAAGAATTGGGCGAGG 420
Query 528 CAGATTTTAATGGGTTTGAGATATCTTCACGGTCAAGAGCCACCAATTATACATCGGGAT 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CAGATTTTAATGGGTTTGAGATATCTTCACGGTCAAGAGCCACCGATTATACATCGGGAT 480
Query 588 CTCAAATGCGACAACATTTTTATCAATGGAAACCATGGAGAAGTGAAAATAGGAGATCTT 647
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCAAATGCGATAACATTTTTATCAATGGAAACCATGGAGAAGTGAAAATAGGAGATCTT 540
Query 648 GGTCTAGCCACTGTCATGGAGCAAGCTAATGCCAAAAGTGTGATTGGAACCCCGGAGTTT 707
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 541 GGTCTAGCCACTGTCATGGAGCAAGCTAACGCCAAAAGTGTTATTGGAACCCCGGAGTTT 600
Query 708 ATGGCACCCGAGCTTTACGACGAGAACTACAACGAATTGGCTGATATTTATTCATTTGGG 767
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGGCACCCGAGCTTTACGATGAGAACTACAACGAATTGGCTGATATTTATTCATTTGGG 660
Query 768 ATGTGTATGTTGGAGATGGTGACATTTGATTATCCCTACTGTGAATGCAAAAACTCTGCT 827
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 ATGTGTATGTTGGAGATGGTGACATTTGAATATCCCTACTGTGAATGCAAAAACTCTGCT 720
Query 828 CAGATATACAAGAAGGTTTCATCGGGAATAAAACCTGCTTCACTCTCCAGGGTTAAAGAC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGATATACAAGAAGGTTTCATCGGGAATAAAACCTGCTTCACTCTCCAGGGTTAAAGAC 780
Query 888 CCAGAAGTAAAACAGTTTATTGAGAAATGCTTACTTCCTGCATCCGAAAGGCTGTCAGCA 947
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 781 CCAGAAGTAAAACAGTTTATTGAGAAATGTTTACTTCCTGCATCCGAGAGGCTGTCAGCA 840
Query 948 AAAGAGCTTTTATTGGACCCTTTTCTGCAACTAAATGGTTTAACAATGAACAATCCTTTG 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAAGAGCTTTTATTGGACCCTTTTCTGCAACTAAATGGTTTAACAATGAACAATCCTTTG 900
Query 1008 CCGCTTCCTGACATTGTAATGCCCAAAGAAGGCGCATTTGGAGACCGTTGCCTTATGTCT 1067
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 CCGCTTCCCGACATTGTAATGCCCAAAGAAGGCGCATTTGGGGACCGTTGCCTTATGTCT 960
Query 1068 GAAGGTCCTCCTACAACACGGCCTAGTAAAACCTTGTCGATAGATCTTGATGAAGACAGT 1127
||||| |||||||||||||||| ||||| | || |||| |||||||| ||||||||||||
Sbjct 961 GAAGGCCCTCCTACAACACGGCGTAGTAGACCCATGTCTATAGATCTCGATGAAGACAGT 1020
Query 1128 AACCTGCCTATTGTTACTTTTAGCGACAATTCAGGATCCAGGTGTATTGAGGTTAGACGC 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AACCTGCCTATTGTTACTTTTAGCGACAATTCAGGATCCAGGTGTATTGAGGTTAGACGC 1080
Query 1188 GCAAAGAGAGGGAATTTCTTTGTCCTCAAGGGTGAAGAAAACGATGAGCAGTCTGTGTCC 1247
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GCAAAGAGAGGAAATTTCTTTGTCCTCAAGGGTGAAGAAAATGATGAGCAGTCTGTGTCC 1140
Query 1248 TTAATTCTTCGTATAGTAGATGAGAATGGGCGTGTGAGGAACATTCATTTCCTGTTCTAT 1307
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1141 CTAATTCTTCGTATAGTAGATGAGAACGGGCGTGTGAGGAACATTCATTTCCTGTTCTAT 1200
Query 1308 CAAGAAGGGGACACTGCTTCTAAGGTGTCGAGTGAGATGGTTGAGCAACTCGAGTTAACT 1367
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAAGAAGGTGACACTGCTTCTAAGGTGTCGAGTGAGATGGTTGAGCAACTCGAGTTAACT 1260
Query 1368 GACCAGAACGTCACGTTTATAGCCGAGCTGATTGATATACTACTTGTCAACATGATACCC 1427
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1261 GACCAGAACGTCACGTTTATAGCCGAGCTAATTGATATACTACTCGTCAACATGATACCC 1320
Query 1428 ACCTGGAAAACCGATGTCACAGTCGATCATCTCATCCATTCGCAACTGAATCAGAACTCA 1487
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ACCTGGAAAACTGATGTCACAGTCGATCATCTCATCCATTCGCAACTGAATCAGAACTCA 1380
Query 1488 AGAAGTCATCATAACGAAGCAAAGCCACAGAAACAAGAGGAGACTGTTTTTCATGATACT 1547
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 1381 AGAAGTCATCATAACGAAGCAAAGCCACAGAAACAAGAGGAGACTACTTTCCATGATGCT 1440
Query 1548 TGTGAGTTGGTTAGTCACTCGTGTAACTCAGATTGCCCACGATCAGATGAGGAAGATAAG 1607
||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1441 TGTGAGTCGGTTAGTCACTCGTGGAACTCAGATTGCCCACGATCAGAAGAGGAAGATAAG 1500
Query 1608 CAATGCGTCGATGCCACCAAAGGAGAAGACAAGAGCTCCATTCAAGAAGTAGAAGAAGCA 1667
||||||||||||||||| ||||||||| || |||||||| | |||||| ||||||||||
Sbjct 1501 CAATGCGTCGATGCCACAAAAGGAGAAAACGGGAGCTCCAATAAAGAAGCAGAAGAAGCA 1560
Query 1668 ACCGAACCAGTAAGTTTGGAGGAAGAAGAAAGGTTAAGACAAGAGCTGGAGGAGATAGAA 1727
||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 1561 ACCGAACCAGTAAGTTTGGAGGAAGAAGAAAAGTTAAGACAGGAACTGGAGGAGATAGAA 1620
Query 1728 GCTAAGTATCAGGAAGATATGAAAGAGATAGCAACGAAAAGAGAAGAGGCCATTATGGAG 1787
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1621 GCTAAGTATCAGGAAGAGATGAAAGAGATAGCAACGAAAAGAGAAGAAGCCATTATGGAG 1680
Query 1788 ACGAAGAAAAAGTTGTCTCTGATGAAGTTAAAGTAA 1823
|| ||||||||||||||||| |||||| | ||||||
Sbjct 1681 ACAAAGAAAAAGTTGTCTCTCATGAAGCTGAAGTAA 1716
> Ahg474058 jgi|Araly1|474058|fgenesh2_kg.1__4012__AT1G49160.2
Length=1881
Score = 1280 bits (693), Expect = 0.0
Identities = 1178/1412 (83%), Gaps = 33/1412 (2%)
Strand=Plus/Plus
Query 116 AAGA-ATGGAAGGTACAGATGATGCTTCTGCACTTCAAGAGCCTCCTGACCCCGAAGTGC 174
|||| ||||||||| |||| |||||||||||| || ||| || |||||||| ||||| |
Sbjct 197 AAGATATGGAAGGTTCAGAAGATGCTTCTGCAATTGTAGAACCACCTGACCCAGAAGTTC 256
Query 175 TCGAAGTTGATCCAACTTTTCGATATATACGGTATAAAGAGGTCATTGGAAAAGGGGCAT 234
| ||| | || ||||||| ||||||||| ||||| ||||| || || || ||||| ||||
Sbjct 257 TTGAAATCGACCCAACTTGTCGATATATTCGGTACAAAGAAGTAATAGGCAAAGGCGCAT 316
Query 235 TCAAGACTGTTTATAAGGCATTTGATGAAGTAGATGGAATTGAAGTCGCATGGAACCAAG 294
|||||| |||| ||||| |||||| ||||||||||| |||||||| || ||||| ||||
Sbjct 317 CCAAGACAGTTTTTAAGGGATTTGACGAAGTAGATGGGATTGAAGTTGCGTGGAATCAAG 376
Query 295 TACGGATAGATGATGTTTTGCAGTCACCGA-ATTGCCTGGAGAGGCTCTATTCTGAAGTG 353
|| |||| || ||| ||||||| ||||| | |||| || |||||||| ||||| ||||||
Sbjct 377 TAAGGATCGACGATCTTTTGCAATCACC-AGATTGTCTCGAGAGGCTATATTCCGAAGTG 435
Query 354 CGTCTGTTGAAATCAT-TGAAGCACAATAATATTATTAGGTTCTATAATTCATGGATCGA 412
|| || |||||||| | ||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct 436 CGGCTTTTGAAATC-TCTGAAGCATAAAAACATTATAAGGTTTTATAACTCGTGGATCGA 494
Query 413 TGATAAGAACAAGACTGTTAACATAATAACTGAGCTATTCACTTCAGGGAGCCTCCGGCA 472
||| |||||||| || ||||||||||| || || | ||||||||||| || ||||||||
Sbjct 495 TGACAAGAACAAAACGGTTAACATAATTACCGAATTGTTCACTTCAGGAAGTCTCCGGCA 554
Query 473 CTACCGCAAGAAACACAGGAAGGTGAACATGAAGGCCGTCAAGAATTGGGCGAGGCAGAT 532
||||| |||||||| || |||||||| |||||||| || ||| ||||||||| |||||
Sbjct 555 GTACCGTAAGAAACATAGAAAGGTGAATATGAAGGCTGTGAAGTGTTGGGCGAGACAGAT 614
Query 533 TTTAATGGGTTTGAGATATCTTCACGGTCAAGAGCCACCAATTATACATCGGGATCTCAA 592
||||| ||| |||| |||||| || ||||||| || || |||||||| || ||| ||||
Sbjct 615 TTTAACGGGATTGAAATATCTACATAGTCAAGATCCGCCGATTATACACCGAGATATCAA 674
Query 593 ATGCGACAACATTTTTATCAATGGAAACCATGGAGAAGTGAAAATAGGAGATCTTGGTCT 652
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 675 ATGTGACAACATTTTTATCAACGGTAACCATGGAGAAGTGAAAATAGGAGATCTTGGTCT 734
Query 653 AGCCACTGTCATGGAGCAAGCTAATGCCAAAAGTGTGATTGGAAC-CCCGGAGTTTATGG 711
||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 735 AGCTACTGTCATGGAGCAAGCTAATGCCAAAAGTGTGATTGGAACACCCG-AGTTTATGG 793
Query 712 CACCCGAGCTTTACGACGAGAACTACAACGAATTGGCTGATATTTATTCATTTGGGATGT 771
| || ||||||||||| |||||||||||||| | |||||||| ||||| || |||||||
Sbjct 794 CGCCTGAGCTTTACGATGAGAACTACAACGAGCTCGCTGATATATATTCGTTCGGGATGT 853
Query 772 GTATGTTGGAGATGGTGACATTTGATTATCCCTACTGTGAATGCAAAAACTCTGCTCAGA 831
|||||||||| |||||||| ||||| ||||| || |||||||| | |||||||||||| |
Sbjct 854 GTATGTTGGAAATGGTGACTTTTGAATATCCTTATTGTGAATGTAGAAACTCTGCTCAAA 913
Query 832 TATACAAGAAGGTTTCATCGGGAATAAAACCTGCTTCACTCTCCAGGGTTAAAGACCCAG 891
| ||||| || |||||||||||||| ||||| ||||||||||| | ||||||||| ||||
Sbjct 914 TCTACAAAAAAGTTTCATCGGGAATTAAACCAGCTTCACTCTCAAAGGTTAAAGATCCAG 973
Query 892 AAGTAA--AACAGTTTATTGAGAAATGCTTACTT-CCTGCATCCGAAAGGCTGTCAGCAA 948
|||||| || | ||||| |||||||| ||| || || || ||||||||| | |||||
Sbjct 974 AAGTAATGAA-A-TTTATCGAGAAATGTTTA-TTGCCAGCTTCCGAAAGGTTATCAGCGG 1030
Query 949 AAGAGCTTTTATTGGACCCTTTTCTGCAAC-TAAATGGTTTAACAATGAACAATCCTTTG 1007
| |||||||||||||| ||||||| ||| | || |||||| ||||||||||| ||
Sbjct 1031 AGGAGCTTTTATTGGATTCTTTTCT-CAATGTGAACGGTTTAGTTATGAACAATCCATTA 1089
Query 1008 CCGCTTCCTGACATTGTAATGCCCAAAGAAGGCGCATTTGGAGACCGTTGCCTTATGTCT 1067
|||||||| |||||||||||||| |||||||| |||| ||||| ||||| |||||||||
Sbjct 1090 CCGCTTCCCGACATTGTAATGCCGAAAGAAGGATCATTCGGAGAACGTTGTCTTATGTCT 1149
Query 1068 GAAGGTCCTCCTACAACACGGCCTAGTAA-A-ACCT-TGTCGATAGA-TCTTGATGAAGA 1123
||||| || |||| | | | ||| || | ||| |||| || || |||||| |||||
Sbjct 1150 GAAGGACCACCTA-AT---G-C-TAGGAATAGACCGATGTCAAT-GAATCTTGACGAAGA 1202
Query 1124 CAGTAACCTGCCTATTGTTACTTTTA-GCGACAATTCAGGATCCAGGTGTATTGAGGTTA 1182
|| |||||| |||||||||| ||| | || ||||||||||||| | ||||||||||||||
Sbjct 1203 CAATAACCTTCCTATTGTTA-TTTCAAGCAACAATTCAGGATCAAAGTGTATTGAGGTTA 1261
Query 1183 GACGCGCAAAGAGAGGGAATTTCTTTGTCCTCAAGGGTGAAGAAAACGATGAGCAGTCTG 1242
|||| ||||||||||| || ||||||||||| || |||||||| || |||||| | ||||
Sbjct 1262 GACGGGCAAAGAGAGGCAACTTCTTTGTCCTTAAAGGTGAAGAGAATGATGAGAACTCTG 1321
Query 1243 TGTC-CTTAATTCTTCGTATAGTAGATGAGAATGGGCGTGTGAGGAACATTCATTTCCTG 1301
| || || ||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1322 TCTCTCT-AATTCTTCGTATAGTCGATGAAAATGGGCGTGTGAGGAACATTCATTTTCTA 1380
Query 1302 TTCTATCAAGAAGGGGACACTGCTTCTAAGGTGTCGAGTGAGATGGTTGAGCAACTCGAG 1361
|||| ||||||||| |||||||||||||| || |||||||||||||| || || || ||
Sbjct 1381 TTCTTTCAAGAAGGTGACACTGCTTCTAATGTATCGAGTGAGATGGTAGAACAGCTTGAA 1440
Query 1362 TTAACTGACCAGAACGTCACGTTTATAGCCGAGCTGATTGATATACTACTTGTCAACATG 1421
|| || || || ||||| | ||||||||| || |||||||| || |||| ||||| ||
Sbjct 1441 TTGACGGATCAAAACGTAAAGTTTATAGCGGAACTGATTGACGTATTACTCGTCAATTTG 1500
Query 1422 ATACCCACCTGGAAAACCGATGTCACAGTCGATCATCTCATCCATTCGCAACTGAATCAG 1481
||||| | |||||||||||||| || ||||||||||| || ||| |||||| ||| |||
Sbjct 1501 ATACCGAATTGGAAAACCGATGTAACGGTCGATCATCTTATTCATCCGCAACAGAACCAG 1560
Query 1482 AACTC-AAG-A-AGTCATCATAACGAAGCAAA 1510
| ||| ||| | | ||||| |||| |||||
Sbjct 1561 AGCTCCAAGGATAACCATCAAAACGGTGCAAA 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74161707015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5