BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G18760.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929762 jgi|Araly1|929762|scaffold_302219.1                        678    0.0  


> Ahg929762 jgi|Araly1|929762|scaffold_302219.1
Length=461

 Score =  678 bits (367),  Expect = 0.0
 Identities = 432/463 (93%), Gaps = 5/463 (1%)
 Strand=Plus/Plus

Query  51   GAAGGAAGAAG--GATCAAAAATGCCGCTCTACGACTGTATGCTTCTGTTCAAGCCTATA  108
            |||||||||||  ||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct  1    GAAGGAAGAAGAAGAT-AAAAATGCCGCTCTACGACTGTATGCTTTTGTTCAAGCCAATA  59

Query  109  ATCAGGAAGGAGGGCCTCATCGACCTCGTTGCGCGCATTGGTAAACACGTTTACAGCAGA  168
            ||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||| |||
Sbjct  60   ATCAGGAAGGAAGGCCTCATCGATCTCGTTGCGCGCATCGGGAAACATGTTTACAGTAGA  119

Query  169  AATGGCGTCCTCACCGAGATCAAATCCTTTGGCAAGGTCGAATTGGGTTACGGTATTAGA  228
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  120  AATGGCGTCCTCACTGAGATCAAATCCTTTGGCAAGGTCGAATTGGGTTACGGTATTAGG  179

Query  229  AAGCTCGACGGAAGACACTATCAGGGACAATTGATGCAGATAACAATGATGACAACTCCA  288
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  180  AAGCTCGACGGAAGACACTACCAGGGACAATTGATGCAGATAACAATGATGACAACTCCA  239

Query  289  AACATGAACAAGGAGCTTCACTACCTGAACAAGGAAGACAAACTGCTGCGCTGGCTCTTA  348
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct  240  AACATGAACAAGGAGCTTCACTACCTCAACAAGGAAGACAAACTGCTGCGCTGGCTCCTA  299

Query  349  GTTAAACACCGTGACATCAAGATTGGACAGTCGGAAAAGGAAGATAGTCTGACTGTGCCT  408
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct  300  GTTAAACACCGCGACATCAAGATTGGACAATCGGAAAAGGAAGATAGTCTGACCGAGCCT  359

Query  409  AACAGACTCACTAGTGGGAGCTTATATGATGGAT-CCTCCTCGGACGAAGATGACAACAA  467
            |||||||| |||| || |||||||||||||  || |||||||||||||||| ||| ||||
Sbjct  360  AACAGACTTACTACTGAGAGCTTATATGATA-ATTCCTCCTCGGACGAAGACGACGACAA  418

Query  468  CATTTTAGGGTTATCACGATGAGGAAATCAATTTCTTTGAAAT  510
            |||| |||||||||||||||||| |||||| ||||||||||||
Sbjct  419  CATTCTAGGGTTATCACGATGAGAAAATCATTTTCTTTGAAAT  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5