BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18770.1
Length=2343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904852 jgi|Araly1|904852|Al_scaffold_0003_1980 2937 0.0
> Ahg904852 jgi|Araly1|904852|Al_scaffold_0003_1980
Length=1890
Score = 2937 bits (1590), Expect = 0.0
Identities = 1801/1899 (95%), Gaps = 30/1899 (2%)
Strand=Plus/Plus
Query 324 ATGTCATCTTCACACAACAGGAGTAACAACAACAATTCAGAAGGAGCTAAAGCAGAACAG 383
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTCATCTTCACACAACAGGAGT---AACAACAATTCAGAAGGTGCTAAAGCAGAACAA 57
Query 384 ATCATATTTGAGTTCTTTGCTAAAAGCCTTCACATCATTCTCGAATCAAGGACTCCTTTT 443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 58 ATCATATTTGAGTTCTTTGCTAAAAGCCTTCACATCATTCTCGAGTCAAGGACTCCTTTT 117
Query 444 ATGTCTTCAAGGAACTTTAGTGGTGAGCAGATGATTTGTTCTCCTTCCTCATCTTCTTCC 503
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 ATGTCTTCAAGGAATTTTAGTGGTGACCAGATGATTTGTTCTCCTTCCTCATCTTCTTCC 177
Query 504 TCTTCCTCGAGTGTTAGACCTCGAGACAAATGGTTCAATCTAGCTCTTAGGGAATGTCCT 563
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 178 TCTTCCTCGAGTGTCAGGCCTCGCGACAAATGGTTCAATCTAGCTCTTAGGGAATGCCCT 237
Query 564 GCAGCTTTAGAGAGTTTCGATATCGGGCGGAGAAGCAGTCTTGAGCCTTTGGTTGTTGAT 623
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GCAGCGTTAGAGAGTTTTGATATCGGGCGGAGAAGTAGTCTTGAGCCTTTGGTTGTTGAT 297
Query 624 GTTGTTCTTGTGGTGAGGCCACTTGTTGGTGATC------A---GTCTGGTAAAAGGGAG 674
|| ||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 298 GTGGTTCTTGTGGTGAGGCCGCTTGTTGGTGATCAGATGAACTTGTCTGGTAAAAGGGAG 357
Query 675 CTTATCAGGAACTTCTCCGGGAAAGATTATCAGTCTGGTTGGAATTCTGATCAAGATGAA 734
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 CTTATCAGGAATTTTTCCGGGAAAGATTATCAGTCGGGTTGGAATTCTGATCAAGATGAA 417
Query 735 TTGGGATGTG-AGACTAAGAACGAGCAGATTATTGAGAGATGGGTGGTGCAATATGATAA 793
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 TTGGGATGTGAAG-CTAAGAACGAGCAGATTATTGAGAGATGGGTGGTGCAGTATGATAA 476
Query 794 TAGGAAGATCAGGGAATCTGTTACTACTAGTAGCAGGAGGTCAAGCAGTAATAAGTTGCA 853
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 TAGGAAGATCAGGGAATCTGTTACTACCAGTAGCAGGAGGTCAAGCAGTAATAAGTTGCA 536
Query 854 AGTGATGTATAAGAAAGCTACTCTGCTGCTTAGATCATTGTTTGTCATGGTTAGGCTTTT 913
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 AGTGATGTATAAGAAAGCTACTCTGCTGCTTAGATCATTGTTTGTGATGGTTAGGCTTTT 596
Query 914 ACCTGCTTATAAGATTTTTCGGGAACTCAATTCCTCGGGGCAGATCTTCAAGTTCAAGCT 973
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 597 ACCTGCTTATAAGATTTTCCGGGAACTTAATTCCTCAGGGCAGATCTTCAAGTTCAAGCT 656
Query 974 TGTTCCTAGGG-TCCCTTCTATAGTTGAGCCATTCACTCGTAAAGAAGAAGCAGAAATGC 1032
|||||| |||| |||| ||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 657 TGTTCCCAGGGTTCCC-TCTATTGTTGAGCCATTCACTCGTAGAGAAGAGGCAGAAATGC 715
Query 1033 AGAAGTTTTCTTTCACACCGGTTGAAACGATCTGTGGTAGACTTTGCTTATCGGTTTTAT 1092
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 AGAAGTTTTCTTTCACACCGGTTGAAACTATCTGTGGTAGACTTTGCTTATCGGTTTTAT 775
Query 1093 ATCGTTCTCTCTCAGATGTCAGTTGCGAACACTCTACACCTATGTCTCCAACATTTATAA 1152
|||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 776 ATCGTTCTCTTTCCGATGTCAGTTGCGAACACTCAACTCCTATGTCTCCAACATTTATAA 835
Query 1153 CCGATTATGTTGGAAGTCCCTTGGCTGATCCTTTAAAGAGGTTCCCTTCCCTTCCTCTTT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCGATTATGTTGGAAGTCCCTTGGCTGATCCTTTAAAGAGGTTCCCTTCCCTTCCTCTTT 895
Query 1213 CATATGGTTCTCCTCCATTGCTGCCATTTCAAAGGCGCCATAGCTGGAGTTTCGATCGTT 1272
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 CATATGGTTCTCCTCCATTGCTGCCATTTCAAAGGCGACATAGCTGGAGTTTCGATCGTT 955
Query 1273 ACAAGGCATCTCCACCTTCTGTTTCTTGCTCACCATCGCCTACACGCTCGGATTCACATG 1332
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 ACAAGGCATCCCCACCTTCTGTTTCTTGCTCACCATCGCCTACACGCTCAGATTCACATG 1015
Query 1333 CATTGGTTTCACATCCTTGCTCTCGTCATCTTCCTCCTCACCCTTCTGATATACCCACTG 1392
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1016 CATTGGTTTCACATCCTTGCTCCCGTCACCTTCCTCCTCACCCTTCTGATATACCCACTG 1075
Query 1393 GTCGTAGGAAGGAAAGCTACCCCGAAG-AGTATTCTCCTTGTCAAGATTTCTCCCCTCCT 1451
|||||||||||||| |||| | |||| | ||| |||||| |||||||||||||||||||
Sbjct 1076 GTCGTAGGAAGGAATGCTATGCTGAAGGA-TATCCTCCTTCTCAAGATTTCTCCCCTCCT 1134
Query 1452 CCTTCTCCTTCAGCACCAAAACACGCCGTCCCAAGAGGCATCACACGTACTGAAAGTGCT 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CCTTCTCCTTCAGCACCAAAACACGCCGTCCCAAGAGGCATCACACGTACTGAAAGTGCT 1194
Query 1512 CCAGTCAGAATACCAGCTCCAACTTTCCAGTCCAAAGAAAACGTTGTGGCACCTTCTGCT 1571
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1195 CCAGTCAGAATCCCAGCTCCAACTTTCCAGCCCAAAGAAAACGTTGTGGCACCTTCTGCT 1254
Query 1572 CATCTGAAGTTGTCGAGACACGCTTCGTTGAAGCCTGTGAGAAACTTGGGTCCTGGTGAA 1631
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CATCTGAAATTGTCGAGACACCCTTCGTTGAAGCCTGTGAGAAACTTGGGTCCTGGTGAA 1314
Query 1632 TCTGGAGCAGCAATAGATAAGCTGTTTCTTTATGGGAGAGATGACTTTAGAAGACCTTCT 1691
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1315 TCTGGAGGAGCAATAGATAAGCTGTTTCTTTATGGGAGAGATGACTTTAGAAGAAATTCT 1374
Query 1692 GGGGTGAGGCCGTCTTCCAGCAGTTCTCCGCGGATATCATTTTCCCGGAGTTCCAGTAGA 1751
||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 1375 GGGGTGAGGCCGTCTGCCAACAGCTCACCGCGGATATCATTTTCCCGGAGTTCCAGTAGA 1434
Query 1752 TCTTTCCAAGACGATTTTGATGATCCTGATTTCCCTTGCCCATTTGATGTTGAGTATGAT 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TCTTTCCAAGACGATTTTGATGATCCTGATTTCCCTTGCCCATTTGATGTTGAGTATGAT 1494
Query 1812 GATATTACAGATCGGAATAGCAGACCAGGGTCGTTTGACCACAGAGGAGACATACATGAA 1871
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1495 GATATTACAGATCGTAATAGCAGACCAGGGTCGTTCGACCACAGAGGAGACATACACGAA 1554
Query 1872 CCATTCGATTCAAGCGGGTCATACCCGAAGAAGTCCCAAGATGCTGCAGTTGGTGCCCTT 1931
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCACTCGATTCAAGTGGGTCATACCCGAAGAAGTCCCAAGATGCTGCAGTTGGTGCCCTT 1614
Query 1932 GTGAGAATGCTGAAGAAAGCGCCACCTCTCAGACAAGATGTCTCTGAATCTTCCAGACCT 1991
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 1615 GTGAGAATGCTGAAGAAAGCTCCTCCTCTCAGACAAGATGTCTCTGAATCTTCCATACCT 1674
Query 1992 GAAATTTGCTCGAACAACAACAA-A-C--C---C--GCAGGGGCTCATGAGATAGCAGTA 2042
|||||||||| |||||||||||| | | | | ||||||||||| ||||||||||||
Sbjct 1675 GAAATTTGCTGGAACAACAACAACAGCAACAAACCAGCAGGGGCTCACGAGATAGCAGTA 1734
Query 2043 GCGTCTATCACAGCCTCGGGGATTGCTCTGGCCTCAAAGACAACAGCTGATGCTTTGGAA 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1735 GCGTCTATCACAGCCTCGGGGATTGCTCTGGCCTCAAAGACAACAGCTGATGCATTGGAA 1794
Query 2103 GAGTTGAGGTCTTACAAAGAAATGAAGAATCATTTGTTGCTTGGTCAATCCACATCAAAC 2162
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1795 GAGTTGAGGTCTTACAAAGAAATGAAGAATCATTTGTTGCTTAGTCAATCCACATCAAAC 1854
Query 2163 CCTTCCTCGGTTACTATTACTTCACCCTTTGATGTTTGA 2201
|||||||||||||||| ||||||| ||||| ||||||
Sbjct 1855 CCTTCCTCGGTTACTA---CTTCACCTTTTGAAGTTTGA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88255097665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5