BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18773.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929765 jgi|Araly1|929765|scaffold_302222.1 1092 0.0
Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1 429 3e-119
> Ahg929765 jgi|Araly1|929765|scaffold_302222.1
Length=696
Score = 1092 bits (591), Expect = 0.0
Identities = 656/688 (95%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 458 AAAGCTTTTTTATAGAGT-AAAGATGTTTTCAGAGCACTTACCTTCTTCTTCATCTCAAG 516
||||| |||||||||||| ||||||| ||||||| || ||||||||||||||||||||||
Sbjct 1 AAAGC-TTTTTATAGAGTAAAAGATGATTTCAGATCAGTTACCTTCTTCTTCATCTCAAG 59
Query 517 TTTTCCAAGAACACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCAT 576
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTTCCAGGACCACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCAT 119
Query 577 TTGCCCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATGTTC 636
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 TTGCTCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATATTC 179
Query 637 TCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAA 239
Query 697 TACGTTGTGCATTTATACGTTCTCGAAGTTTCATGATCTCTGATCCCATCTCTATCCCAT 756
||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 TACGTTGCGCATTCAGACGTTCTCGAAGTTTTATGATCTCTGATCCCATCTCTATCCCAT 299
Query 757 CCACACCAAGAGATTCATCAGTAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTAC 816
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 300 CCACACCAAGAGATTCATCAGCAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTCC 359
Query 817 CAGTTGTGAATTACTCACCTGAAATTAACCTGCCAGGGGTCGGTGAAGAGTGTGTCATCT 876
|||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||
Sbjct 360 CAGTTGTGAATTACTCACCTGAGATTAACCAGCCAGGGCTTGGTGAAGAGTGTGTCATCT 419
Query 877 GCTTGTCTGATTTTGTTGCTGGAGAACAGCTACGTGTACTTCCCAAGTGCAACCATGGAT 936
||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||| || |
Sbjct 420 GCTTGTCTGATTTTGTTGCTGAAGAACAGCTACGTCTGCTTCCCAAGTGTAACCACGGGT 479
Query 937 TCCACCTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGAC 996
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCACGTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGAC 539
Query 997 ACTGTCTGGTTGATACATGCCAAAAAGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGG 1056
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 ACTGTCTGGTTGATACATGCCAAAAGGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGG 599
Query 1057 CAGCGACAGCAACGGAGAGCATAGATATCAGAATTTCTCCTCTAGAACCTGAAGCAAGAG 1116
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 CAGCAACATCAACGGAGAGCATAGATATCAGAATTGCTCCTCTAGAACCTGAAGCAAGAG 659
Query 1117 TAGCCACTTTTAGAGAAAGCAGCTAGAG 1144
|||||||||||||| |||||||||||||
Sbjct 660 TAGCCACTTTTAGATAAAGCAGCTAGAG 687
> Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1
Length=918
Score = 429 bits (232), Expect = 3e-119
Identities = 444/543 (82%), Gaps = 27/543 (5%)
Strand=Plus/Plus
Query 613 AGAACAACTTGAGCGGCAATGTTCTCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCT 672
|||||||| | || || ||||| || ||||| ||||| ||||| | || || |||||||
Sbjct 221 AGAACAACCTCAGTGGGAATGTCCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCT 280
Query 673 GCTCCCTCGGGTTGCATTACATAATACGTTGTGCATTTATACGTTC-TCGAAGTTTCATG 731
| | ||||||||| |||||||| || ||||||||||| | |||| | || ||||||||||
Sbjct 281 GTTGCCTCGGGTTACATTACATCATTCGTTGTGCATTCAGACGTACTTC-AAGTTTCATG 339
Query 732 ATCTCTGATCCCATCTCT-ATCCCATCCACACCAAGAGATTCATCAGTAAACAAAGGGAT 790
||||| || || |||||| | | || |||||| | | |||||| ||||||||| ||
Sbjct 340 ATCTCCGAACCTATCTCTGGT-CTTTCAACACCATGCGGTTCATC---AAACAAAGGAAT 395
Query 791 CAAGAAGAAAGCTCTCAAGATGTTACCAGTTGTGAATTACTCACCTGAAATTAACCTGCC 850
||||||||||||||| | |||||| |||||||||| |||||||||||| || ||||||||
Sbjct 396 CAAGAAGAAAGCTCTTAGGATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCC 455
Query 851 AGGG-GTCGGTGAAGAGTGTGTCATCTGCTTGTCTGATTTTGTTGCTGGAGAACAGCTAC 909
||| | || |||||||||||||| || ||||| ||||||||| | || |||||| | |
Sbjct 456 -GGGACTTGGCGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGAT-C 513
Query 910 -GTG-TACTTCCC-AAGTGCAACCATGGATTCCACCTTCGCTGCATCGACAAATGGCTTA 966
| | | | |||| |||||| ||||||| ||||| |||| ||||| ||||| ||||||
Sbjct 514 AG-GATGC-TCCCTAAGTGCCACCATGGGTTCCATGTTCGTTGCATTGACAAGTGGCTT- 570
Query 967 C-GCAACATATGACTTGTCCGAAATGCAGACACTGTCTGGTTGATACATGCCAAAA-AGT 1024
| |||| | |||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 571 CAACAACGTTTGACTTGTCCGAAATGCAGACACTGTCTGGTTGAGACATGCCAAAAGA-T 629
Query 1025 CTTAAGTGACTGC-GATGCA-GCTGATCAAGTGGCAGCGACAGCAACGGAGAGCATAGAT 1082
|||| |||||| | | | || ||||||||||||||||| ||| |||| |||||| || ||
Sbjct 630 CTTAGGTGACTTCAG-T-CAAGCTGATCAAGTGGCAGCAACACCAACAGAGAGCGTA-AT 686
Query 1083 A-TCA-GAATTTCTCCTCTAGAACCTGAAGCAAGAGTAGCCACTTTTAGAGAAAGCAGCT 1140
||| || |||||||| |||||||||||| ||||||| |||||| |||||||||||||
Sbjct 687 TGTCATGA-TTTCTCCTTTAGAACCTGAAGGAAGAGTAAACACTTTAAGAGAAAGCAGCT 745
Query 1141 AGA 1143
|||
Sbjct 746 AGA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5