BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18777.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479387 jgi|Araly1|479387|fgenesh2_kg.3__2088__AT3G18777.1 1426 0.0
> Ahg479387 jgi|Araly1|479387|fgenesh2_kg.3__2088__AT3G18777.1
Length=1137
Score = 1426 bits (772), Expect = 0.0
Identities = 897/957 (94%), Gaps = 10/957 (1%)
Strand=Plus/Plus
Query 5 TTTCTCACTAAATGTAAGAAAGTATATGGAAACCTTTACCTTTCCACTATATATAGAACC 64
|||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 TTTCCCATTAAATGTAAGAAAGTATATGCAAACCTTTACCTTTCCTCTATATATAGAACC 60
Query 65 TGCAACAGAAACAC-AGAAGATCTATCAATCTAACTCTTCAAACTAGGTTATCATGTCGA 123
||||||| |||| | |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 TGCAACAAAAAC-CTAGAAGATCTATCTATCAAACTCTTCAAACTAGGTTATCATGTCGA 119
Query 124 CCGCAACTTCTGCTCCCACTACCAAACCAACTGAGCTCTTCCAAGATATTCGGGGAGATT 183
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 CCGCAACTTCTGCTCCCATTACCAAACCAACTGAGCTCTTCCAAGATATTCGTGGAGATT 179
Query 184 TTTACTCAAGAAGACTGCTACTTCATACAGCTTATCAACCACCTACTGCGGCATCA-CCG 242
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 180 TTTACTCAAGAAGACTACTACTTCATACAGCTTATCAACCACCTACCACGGCATCATCC- 238
Query 243 CCGTTTGCAGATGCTCATGAAGCATCACACTCCTAC-CAAAGTCATATGAGCTTTGATGC 301
||||||||||| ||||||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct 239 CCGTTTGCAGACGCTCATGAAACATCACACACCTACGC-AAGTCATATGAGCTTTGATGC 297
Query 302 AAATGTTGTCATGGTCCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACTTGGACTGCA 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAATGTTGTCATGGTTCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACTTGGACTGCA 357
Query 362 TTCTATCATAAGATGTGCACTAAGGTACTCCAATTTATTATCATCCGAAGCTAGTGACGA 421
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 358 TTCTATCATAAGATGTGCACTGAGGTACTCCAATTTATTATCATCTGAAGCTAGTGACGA 417
Query 422 GTTCTCAGTTCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTTGAAGAGTTTCCAGAC 481
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCTCTCAGTCCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTTGAAGAGTTTCCAGAC 477
Query 482 GGTAAGCTACACAGCAGAACTGAAGCTACCTGGCCTAGATACAGAGTGTGCCATATGTCT 541
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 AGTAAGCTACACTGCAGAACTGAAGCTGCCTGGCCTAGATACAGAGTGTGCCATATGTCT 537
Query 542 CTCGGAGTTTGCATCGGGAGAGCGAGTCAAGCTTCTGCCGAAGTGCCACCATGGATTCCA 601
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 538 CTCGGAGTTTGTGTCCGGAGAGCGAGTCAAGCTTCTGCCAAAGTGCCACCATGGATTCCA 597
Query 602 TGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCTTGTCCCACCTGCAGGCACTG 661
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 598 TGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCGTGTCCCACGTGCAGGCACTG 657
Query 662 CCTCATTCAGACTTGCAAAAAGATAGCTGGGTACAGTGAGACGGAATCATCACCTAATCA 721
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 658 CCTCATTCAGACTTGCAAAAAGATAGCTGGCTGCAGTGAGACGGTCTCATCACCTAATCA 717
Query 722 ACCACAACAGAACGTGCATATATCACCGCTAGGACCGGAATCATTGATACGCGGTTTTAG 781
||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 ACCACAAGAAAACATGCATATAGCACCGCTAGGACCGGAATCATTGATACGCGGTTTTAG 777
Query 782 CTAAACACAGTCAACTAGGCTTAGGTGCAGTTATCTTTT-ATAA-CCTGATATACATGTA 839
||||||||||||||||||| |||||||||||||| |||| | || || |||||| |||||
Sbjct 778 CTAAACACAGTCAACTAGGGTTAGGTGCAGTTATGTTTTGAAAAGCC-GATATATATGTA 836
Query 840 CTGCCACACCTTTAGAAATAGTCAAGATCCCAAAGTATCTGAAGTTCAATATTCAAAAAC 899
|||||||||| |||||| ||||| |||||||||||||||| |||| ||||||||||| |
Sbjct 837 CTGCCACACCATTAGAATTAGTCGTGATCCCAAAGTATCTGCAGTTGAATATTCAAAA-C 895
Query 900 AACGTAATCGTTTCCACTGTAAAGTTTTAAACATTATGAAATGTTGTTTTCTTCACT 956
|||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 896 AACGTAATCGTTTCCACTGTAAAGTTTTAAACATTAAGACATGTTGTTTTTTTCACT 952
Score = 244 bits (132), Expect = 8e-64
Identities = 174/192 (91%), Gaps = 11/192 (6%)
Strand=Plus/Plus
Query 982 CACAAAACGACACTCCAATAGAAGATCTTAGACTCTCACGTCAGTGAATGAAATGATAAA 1041
||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 949 CACTAAATGACATTCCAATAGAAGATCTTAGA--CTCACGTCAGTGAATGAAATGATAAA 1006
Query 1042 CAACTAAAAATCCAAAGATAAGGAAGCTGAGAAGGCAAAACACTCAAAACCAACCAACTT 1101
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CAACTCAAAATACAAAGATAAGGAAGCTGAGAAGGCAAAACACTCAAAACCAACCAACTT 1066
Query 1102 GGTCAACTAAGAGAATTCC----TT-AA-A--TTCCCAGGTTATTAAAACATGGCTATGC 1153
||||||||||||||||||| || || | ||| ||||||||||||||||| ||||||
Sbjct 1067 GGTCAACTAAGAGAATTCCCAGCTTTAAGAAATTCTCAGGTTATTAAAACATG-CTATGC 1125
Query 1154 CACTAGTGTCTT 1165
|||||||||||
Sbjct 1126 AACTAGTGTCTT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5