BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18790.1
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479390 jgi|Araly1|479390|fgenesh2_kg.3__2091__AT3G18790.1 1881 0.0
> Ahg479390 jgi|Araly1|479390|fgenesh2_kg.3__2091__AT3G18790.1
Length=1230
Score = 1881 bits (1018), Expect = 0.0
Identities = 1165/1235 (94%), Gaps = 13/1235 (1%)
Strand=Plus/Plus
Query 103 TCTGCTTTCCTTTGAGATTTGCTAGTGTAATCGTAACCTCCGAAGACCCAAGATGGCTCG 162
||| |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1 TCTTCTTTCCTTTGAGATTTTCTAGTGCAATCGTAACCTCCGAAGATCCAAGATGGCTCG 60
Query 163 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGATTCATCACCCAGAAAGAATCTGAGAA 222
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 61 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGGTTCATCACCCAGAAAGAAGCTGAGAA 120
Query 223 GAAGAAGCCAAAAGAGCGTCGACCTTACCTCGCATCAGAATGTAGAGATCTAGCTGAAGC 282
||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||| |||||
Sbjct 121 GAAGAAGCCGAAAGAGCGTCGACCTTTCCTTGCATCTGAATGTCGAGATCTAGCGGAAGC 180
Query 283 AGACAAATGGAGACAGCAAATTTTGAGAGAGATCGGTAGCAAAGTAGCTGAGATTCAGAA 342
|||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 181 AGACAAATGGAGACAGCAAATTCTGAGAGAGATCGGAAGCAAAGTGGCTGAGATTCAGAA 240
Query 343 CGAAGGATTAGGAGAGCACAGACTTCGAGATCTAAACGATGAGATTAACAAGCTTCTCAG 402
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CGAAGGATTAGGAGAGCACCGACTTCGAGATCTAAACGACGAGATTAACAAGCTTCTCAG 300
Query 403 GGAGAGATATCATTGGGAGCGGCGAATCGTTGAGCTAGGTGGTCAC-AATTACTCGAAAC 461
||||||||||||||||||| |||||||||||||||||||||||| | ||||| || ||||
Sbjct 301 GGAGAGATATCATTGGGAGAGGCGAATCGTTGAGCTAGGTGGTC-CGAATTATTCTAAAC 359
Query 462 ATTCGGCGAAGATGACGGATCTAGAAGGTAACATAATCGATGTACCTAACCCTAGTGGTC 521
| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 360 ACTCTGCGAAAATGACGGATCTTGAAGGTAACATCATCGATGTACCTAACCCTAGTGGTC 419
Query 522 GTGGTCCTGGTTATCGTTACTTCGGAGCTGCTAAGAAACTTCCTGGTGTTAGAGAGCTTT 581
| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 420 GCGGTCCTGGTTATCGTTATTTCGGAGCTGCTAAGAAGCTTCCTGGAGTTAGAGAGCTTT 479
Query 582 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATATAAAAGGATTG 641
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATACAAAAGGATTG 539
Query 642 ATGCTAGCTATTATGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAGTTGGAGAGGA 701
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 ATGCTAGCTATTACGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAATTGGAGAGG- 598
Query 702 AAT-CTGAAGGAGGGATGAGGAAAAGATCGGTGGAGGAGTGGCGGAGATTAGATGAGGTT 760
||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 AATGCTGAAGGAGTGATGAGGAAAAGATCGGTGGAGGAATGGCGGAGATTAGATGAGGTT 658
Query 761 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCAGCTGCTGCG 820
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCTGCTGCTGCG 718
Query 821 GCgagggaagtgttgtttgaggaggaggaggatgttgttgaggaggagaggatggagagg 880
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 719 GCGAGGGAAGTGTTGTTTGAGGAGGAAGAAGATGTGGTTGAGGAGGAGAGGATGGAGAGG 778
Query 881 gagaaagaggaggagaaagagagggaATTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 940
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 GAGAGAGAGGAGGAGAAAGAGAGGGAGTTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 838
Query 941 GAGATTGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCTAGT 1000
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 GAGATAGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCAAGT 898
Query 1001 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 958
Query 1061 GATGC-TCTGTTTTACCAACAAACTCAGCCGCGATGGTCTCTTGCCTAAAGAAGAAACGA 1119
||||| | |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 GATGCGT-TGTTTTGCCAACAAACTCAGCCGCGCTGGTCTCTTGCCTAAAGAAGAAACGT 1017
Query 1120 TGTTGGGCGTTTGAAATAT-GATTTCATGGAAACAAATGTGAAAGACTCAAGGAGAAGAT 1178
|||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||
Sbjct 1018 TGTTGGGCGTTTGAAATACCGATTTCCTGGAAACAAATATGTGAGACTCAAGGAGAAGAG 1077
Query 1179 ACAATGTCACTTGGAACTGAACTAGTGTATTCTATTATGTAGCTCGACTTTTGTATCTTT 1238
|||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1078 ACAATGGCACTTGGAACTGAAATAGT--ATTCTCTTATGTAGCTCGACTTTTGTATCTTT 1135
Query 1239 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATACATTGTT-CCTTTGGCTCTAAC 1297
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 1136 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATGCATCGTTTCCTTTGGCTCTAAC 1195
Query 1298 TAGATTGGTG---CTATGCAGAGACATAAGTTGAG 1329
| |||||||| ||||||||||||||||||||||
Sbjct 1196 TTGATTGGTGTTGCTATGCAGAGACATAAGTTGAG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5