BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18790.1 Length=1336 Score E Sequences producing significant alignments: (Bits) Value Ahg479390 jgi|Araly1|479390|fgenesh2_kg.3__2091__AT3G18790.1 1881 0.0 > Ahg479390 jgi|Araly1|479390|fgenesh2_kg.3__2091__AT3G18790.1 Length=1230 Score = 1881 bits (1018), Expect = 0.0 Identities = 1165/1235 (94%), Gaps = 13/1235 (1%) Strand=Plus/Plus Query 103 TCTGCTTTCCTTTGAGATTTGCTAGTGTAATCGTAACCTCCGAAGACCCAAGATGGCTCG 162 ||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| Sbjct 1 TCTTCTTTCCTTTGAGATTTTCTAGTGCAATCGTAACCTCCGAAGATCCAAGATGGCTCG 60 Query 163 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGATTCATCACCCAGAAAGAATCTGAGAA 222 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 61 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGGTTCATCACCCAGAAAGAAGCTGAGAA 120 Query 223 GAAGAAGCCAAAAGAGCGTCGACCTTACCTCGCATCAGAATGTAGAGATCTAGCTGAAGC 282 ||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||| ||||| Sbjct 121 GAAGAAGCCGAAAGAGCGTCGACCTTTCCTTGCATCTGAATGTCGAGATCTAGCGGAAGC 180 Query 283 AGACAAATGGAGACAGCAAATTTTGAGAGAGATCGGTAGCAAAGTAGCTGAGATTCAGAA 342 |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| Sbjct 181 AGACAAATGGAGACAGCAAATTCTGAGAGAGATCGGAAGCAAAGTGGCTGAGATTCAGAA 240 Query 343 CGAAGGATTAGGAGAGCACAGACTTCGAGATCTAAACGATGAGATTAACAAGCTTCTCAG 402 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 241 CGAAGGATTAGGAGAGCACCGACTTCGAGATCTAAACGACGAGATTAACAAGCTTCTCAG 300 Query 403 GGAGAGATATCATTGGGAGCGGCGAATCGTTGAGCTAGGTGGTCAC-AATTACTCGAAAC 461 ||||||||||||||||||| |||||||||||||||||||||||| | ||||| || |||| Sbjct 301 GGAGAGATATCATTGGGAGAGGCGAATCGTTGAGCTAGGTGGTC-CGAATTATTCTAAAC 359 Query 462 ATTCGGCGAAGATGACGGATCTAGAAGGTAACATAATCGATGTACCTAACCCTAGTGGTC 521 | || ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 360 ACTCTGCGAAAATGACGGATCTTGAAGGTAACATCATCGATGTACCTAACCCTAGTGGTC 419 Query 522 GTGGTCCTGGTTATCGTTACTTCGGAGCTGCTAAGAAACTTCCTGGTGTTAGAGAGCTTT 581 | ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct 420 GCGGTCCTGGTTATCGTTATTTCGGAGCTGCTAAGAAGCTTCCTGGAGTTAGAGAGCTTT 479 Query 582 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATATAAAAGGATTG 641 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 480 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATACAAAAGGATTG 539 Query 642 ATGCTAGCTATTATGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAGTTGGAGAGGA 701 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 540 ATGCTAGCTATTACGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAATTGGAGAGG- 598 Query 702 AAT-CTGAAGGAGGGATGAGGAAAAGATCGGTGGAGGAGTGGCGGAGATTAGATGAGGTT 760 ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 599 AATGCTGAAGGAGTGATGAGGAAAAGATCGGTGGAGGAATGGCGGAGATTAGATGAGGTT 658 Query 761 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCAGCTGCTGCG 820 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 659 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCTGCTGCTGCG 718 Query 821 GCgagggaagtgttgtttgaggaggaggaggatgttgttgaggaggagaggatggagagg 880 |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 719 GCGAGGGAAGTGTTGTTTGAGGAGGAAGAAGATGTGGTTGAGGAGGAGAGGATGGAGAGG 778 Query 881 gagaaagaggaggagaaagagagggaATTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 940 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 779 GAGAGAGAGGAGGAGAAAGAGAGGGAGTTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 838 Query 941 GAGATTGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCTAGT 1000 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 839 GAGATAGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCAAGT 898 Query 1001 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 958 Query 1061 GATGC-TCTGTTTTACCAACAAACTCAGCCGCGATGGTCTCTTGCCTAAAGAAGAAACGA 1119 ||||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 959 GATGCGT-TGTTTTGCCAACAAACTCAGCCGCGCTGGTCTCTTGCCTAAAGAAGAAACGT 1017 Query 1120 TGTTGGGCGTTTGAAATAT-GATTTCATGGAAACAAATGTGAAAGACTCAAGGAGAAGAT 1178 |||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| Sbjct 1018 TGTTGGGCGTTTGAAATACCGATTTCCTGGAAACAAATATGTGAGACTCAAGGAGAAGAG 1077 Query 1179 ACAATGTCACTTGGAACTGAACTAGTGTATTCTATTATGTAGCTCGACTTTTGTATCTTT 1238 |||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 1078 ACAATGGCACTTGGAACTGAAATAGT--ATTCTCTTATGTAGCTCGACTTTTGTATCTTT 1135 Query 1239 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATACATTGTT-CCTTTGGCTCTAAC 1297 ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| Sbjct 1136 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATGCATCGTTTCCTTTGGCTCTAAC 1195 Query 1298 TAGATTGGTG---CTATGCAGAGACATAAGTTGAG 1329 | |||||||| |||||||||||||||||||||| Sbjct 1196 TTGATTGGTGTTGCTATGCAGAGACATAAGTTGAG 1230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49979144187 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5