BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18800.1
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479391 jgi|Araly1|479391|fgenesh2_kg.3__2092__AT3G18800.1 1114 0.0
> Ahg479391 jgi|Araly1|479391|fgenesh2_kg.3__2092__AT3G18800.1
Length=667
Score = 1114 bits (603), Expect = 0.0
Identities = 646/667 (97%), Gaps = 1/667 (0%)
Strand=Plus/Plus
Query 16 TCTCTCTAACCAATAACACTTTTTCTCTCTTCTCAGT-CCTTCAATGGCGGACTACGACG 74
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TCTCTCTAACCAAAAACACTTTTTCTCTCTTCTCAGTCCCTTCAATGGCGGACTACGACG 60
Query 75 ACGAAATTGACCAGAATAACCAACCTTTCATCCCCAAAGAAACTGCTCTACAAGCACTAA 134
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ACGAAATTGACCACAGTAACCAACCTTTCATCCCCAAAGAAACTGCTCTACAAGCTCTAA 120
Query 135 ACTCAATAATCCAGCTCCACTTCGAGAAAACCTTAGAGAAGAAACGAGCCATTGACCACC 194
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 121 ACTCAATAATCCAGCTCCACTTCGAGAAAACCTTAGAGAAAAAACGAGCCATTGACCATC 180
Query 195 AGAAGAAGAAGCTCCACAAGCTATTTCAGCTCTTCTTCATCTTCCTCGCCGTAATCTTCT 254
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 AGAAGAAGAAGCTCCACAAGCTATTTCAGCTCTTCTTCATCTTCCTCGCCGTGATCTTCT 240
Query 255 TCTCCCTCTCTCAACCCTCAGGTCGTCTTCACTGCCGCCATTGCTGGGCACCCATCTGCC 314
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 TCTCTCTATCTCAACCCTCAGGTCGTCTCCACTGCCGCCATTGCTGGGCACCCATCTGCC 300
Query 315 TCCTATCCTTCTCTCACCTCTTCTTCTACGTCTCCGTCGCTCAAACTCTCCGTTGCATCA 374
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCTCTCCTTCTCTCACCTCTTCTTCTACGTCTCCGTCGCTCAAACTCTCCGTTGCATCA 360
Query 375 ACGGCTTCAAGTACCAGCGTCGCTGCCATAAGCTCACTCTCGGTCTCGCCACTCACAAGC 434
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 361 ACGGTTTCAAGTACCAGCGTCGCTGCCATAAGCTCACTCTCGGCCTCGCCACTCATAAGC 420
Query 435 TCCGTTTCATCAAGTCAAGAATCGCTGCCGGAGATTTCCTCGGTGGAGGCGACGGTGATG 494
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 421 TCCGTTTCATCAAGTCAAGAATCGCTGCCGGCGATTTCCTCGGTGGTGGCGACGGTGACG 480
Query 495 AGGCCTCTGCTGCTGCTTGGGATCTGGAAGTTCCGTATCAAGAACCACCTGATAGCTACT 554
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 AGGCCTCGGCTGCTGCTTGGGATCTGGAAGTTCCGTATCAAGAACCACCAGATAGCTACT 540
Query 555 TTGGCAAGTTTAAGAGAAATTGGGCTCTCTATTTTGGGTTCTTGATCCTTCTTTACACTT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGGCAAGTTTAAGAGAAATTGGGCTCTCTATTTTGGGTTCTTGATCCTTCTTTACACTT 600
Query 615 TCATGATCTCTTTCTCTGTCGTTATCCTCTGTTTCTGAGATCTCTAGAGTGGCATTTTCG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 TCATGATCTCTTTCTCTGTCGTTATCCTCTGTTTCTGAGATCTCTAGAGTGGCATATTCG 660
Query 675 TAAATTT 681
|||||||
Sbjct 661 TAAATTT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25389862722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5