BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18820.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929771 jgi|Araly1|929771|scaffold_302228.1 1109 0.0
Ahg923290 jgi|Araly1|923290|scaffold_104571.1 302 4e-81
> Ahg929771 jgi|Araly1|929771|scaffold_302228.1
Length=661
Score = 1109 bits (600), Expect = 0.0
Identities = 638/657 (97%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 183 TTTTAGATCCGATTCGATGCCGTCCCGTAGACGTACCCTCCTCAAGGTCATCATCCTCGG 242
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 5 TTTTAGATCCGATTCGATGCCGTCCCGTAGACGCACTCTCCTGAAAGTCATCATCCTCGG 64
Query 243 TGATAGCGGGGTGGGAAAAACCTCTTTGATGAATCAGTATGTTAATAAAAAGTTCAGCAA 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 65 TGATAGCGGGGTGGGAAAAACCTCTTTGATGAATCAATATGTTAATAAAAAGTTCAGCAA 124
Query 303 CCAGTACAAGGCAACCATTGGAGCCGACTTCTTGACCAAGGAAGTACAGTTTGAAGATCG 362
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 125 CCAGTACAAGGCAACCATTGGAGCTGACTTCTTGACCAAGGAAGTTCAGTTTGAAGATCG 184
Query 363 ACTTTTCACTTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ACTTTTCACTTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGT 244
Query 423 AGCCTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAATTCCATGAAATC 482
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 245 AGCTTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCATGAAGTC 304
Query 483 ATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCC 364
Query 543 AGAGAATTTTCCATTTGTTCTTATCGGAAACAAGGTTGACGTGGATGATGGAAACAGCAG 602
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 365 AGAGAATTTTCCATTTGTTCTTATCGGGAACAAGGTTGACGTGGATGGTGGAAACAGCAG 424
Query 603 AGTGGTTTCAGAGAAAAAGGCTAAAGCTTGGTGTGCTTCAAAGGGGAACATTCCTTACTT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGTGGTTTCAGAGAAAAAGGCTAAAGCTTGGTGTGCTTCAAAGGGGAACATTCCTTACTT 484
Query 663 TGAGACCTCTGCCAAGGTAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGGA 722
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 485 TGAGACCTCTGCCAAAGAAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGAA 544
Query 723 CGCATTGAAGAGCGGAGAAGAAGAAGAACTATACTTGCCAGACACAATCGATGTAGGGAC 782
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 545 CGCATTGAAGAGCGGAGAAGAAGAAGAGTTATACTTGCCAGACACAATCGATGTCGGGAC 604
Query 783 GAGCAATCAACAGAGGTCTACAGGGTGTGAATGCTAAGGAGTATCACCAGAAGGAAA 839
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 605 GAGCAATCAACAGAGGTCCACAGGGTGTGAATGCTAAGGAGTATCACCAGAAGGAAA 661
> Ahg923290 jgi|Araly1|923290|scaffold_104571.1
Length=349
Score = 302 bits (163), Expect = 4e-81
Identities = 220/248 (89%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 280 TATGTTAATAAAAAGTTCAGCAACCAGTACAAGGCAACCATTGGAGCCGACTTCTTGACC 339
||||| ||||| ||||| ||||||||||| ||||| |||||||| || || ||||||||
Sbjct 75 TATGTGAATAAGAAGTTTAGCAACCAGTATAAGGCGACCATTGGGGCTGATTTCTTGACT 134
Query 340 AAGGAAGTACAGTTTGAAGATCGACTTTTCACTTTACAGATCTGGGATACAGCTGGACAG 399
|||||||| || |||||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct 135 AAGGAAGTGCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCAG 194
Query 400 GAAAGGTTTCAGAGCCTTGGTGTAGCCTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTA 459
|||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 195 GAAAGGTTTCAGAGTCTTGGTGTGGCATTTTATCGTGGTGCTGATTGCTGTGTTCTTGTA 254
Query 460 TATGATGTCAATTCCATGAAA-TCATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCT 518
||||||||||| ||| ||| |||||||| |||| ||||||||||||||||| |||||
Sbjct 255 TATGATGTCAACTCCGC-AAAGTCATTTGAGGATCTCAACAACTGGAGGGAAGAGTTTCT 313
Query 519 GATCCAGG 526
||||||||
Sbjct 314 GATCCAGG 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5