BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18830.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929772 jgi|Araly1|929772|scaffold_302229.1 2492 0.0
> Ahg929772 jgi|Araly1|929772|scaffold_302229.1
Length=1667
Score = 2492 bits (1349), Expect = 0.0
Identities = 1563/1668 (94%), Gaps = 7/1668 (0%)
Strand=Plus/Plus
Query 37 tctctctctcGCCCCATTCTCTATCATAATGACAGGTGCCACACCGGAAAACCGAACGGC 96
|||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 3 TCTCTCTCTCTCCCCATTCTCTATCATAATGACAGGTTCCACACCGGAAAACCAAACGGC 62
Query 97 CCC-GTCGCCACCACCGGTGAAACATGTGCCGGAGTCAGTTCTGCCGGCTAAACCACCAA 155
||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 CCCAG-CGCCACCACCGGTGAAACATGTGCCGGCGTCAGTTCTGCCGGCTAAACCACCAA 121
Query 156 AGAGGAACAATTATGCATTCGCGTGTGCTATCTTAGCTTCCATGACTTCTATCCTCCTTG 215
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 122 AGAGGAACAAGTATGCATTCGCGTGTGCTATCTTAGCTTCCATGACTTCCATCCTCCTCG 181
Query 216 GTTATGATATAGGAGTGATGAGTGGAGCAATGATTTATATAAAGAGAGATTTGAAGATTA 275
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 GTTATGATATAGGAGTGATGAGTGGAGCAATGATATATATAAAGAGAGATTTGAAGATTA 241
Query 276 ATGATTTACAAATCGGGATTCTCGCTGGAAGCCTCAACATCTATTCACTTATAGGATCTT 335
|||||||||||| || |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 242 GTGATTTACAAATTGGTATTCTCGCAGGAATCCTCAACATCTATTCACTTATAGGATCTT 301
Query 336 GCGCCGCCGGAAGAACCTCTGACTGGATTGGTCGGCGTTACACTATCGTGTTGGCTGGAG 395
|||||||||||| ||||||||||| ||||||||| ||||| ||||||||| |||||||||
Sbjct 302 GCGCCGCCGGAAAAACCTCTGACTTGATTGGTCGACGTTATACTATCGTGCTGGCTGGAG 361
Query 396 CCATATTCTTCGCCGGAGCTATCCTTATGGGATT-GTCCCCTAACTACGCTTTCCTCATG 454
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 362 CCATATTCTTCGTCGGAGCTATCCTTATGGGATTAG-CCCCTAACTACGCTTTCCTCATG 420
Query 455 TTCGGAAGGTTCATCGCCGGTATCGGCGTCGGATATGCTCTCATGATCGCACCAGTTTAT 514
|||||||||||| |||||||| | ||||||||||| || |||||||||||||||||||||
Sbjct 421 TTCGGAAGGTTCGTCGCCGGTGTTGGCGTCGGATACGCCCTCATGATCGCACCAGTTTAT 480
Query 515 ACCGCCGAAGTCTCTCCGGCATCTTCCCGCGGCTTCCTCAATTCCTTCCCCGAGGTGTTT 574
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 481 ACCGCCGAAGTCTCTCCGGCCTCTTCCCGCGGCTTCCTCACCTCCTTCCCGGAGGTGTTC 540
Query 575 ATCAACGCCGGAATTATGCTCGGGTACGTATCAAATCTGGCTTTCTCGAACTTGCCGTTG 634
|| || ||||||||||||||||| |||||||||||| ||||||||||||| || ||||||
Sbjct 541 ATAAATGCCGGAATTATGCTCGGCTACGTATCAAATTTGGCTTTCTCGAAATTTCCGTTG 600
Query 635 AAGGTAGGATGGAGACTGATGCTCGGAATCGGAGCCGTACCTTCCGTGATACTCGCTATC 694
|| | ||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 601 AAACTGGGATGGAGACTCATGCTCGGGATCGGAGCCGTACCGTCCGTGATACTCGCTCTC 660
Query 695 GGCGTTCTCGCTATGCCGGAATCTCCACGGTGGCTCGTTATGCAAGGCCGTCTCGGTGAT 754
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 661 GGCGTTCTCGCTATGCCGGAATCTCCACGTTGGCTCGTTATGCAAGGCCGTCTCGGCGAA 720
Query 755 GCCAAGCGCGTTCTGGACAAAACCTCTGATTCCCCCACCGAAGCAACTCTCCGTCTCGAA 814
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 721 GCCAAACGCGTTCTCGACAAAACCTCTGATTCCCCCACCGAAGCAGCTCTCCGTCTTGAA 780
Query 815 GACATCAAACACGCCGCTGGTATTCCCGCCGATTGCCACGACGACGTCGTTCAGGTGTCG 874
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACATCAAACACGCCGCCGGTATTCCCGCCGATTGCCACGACGACGTCGTTCAGGTGTCG 840
Query 875 AGGAGGAACAGTCATGGAGAAGGAGTTTGGAGAGAGCTTTTAATCCGACCAACACCAGCC 934
| |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 841 AAGAGGAACAGTCATGGAGAAGGAGTTTGGAGAGAGCTCTTAATCCGTCCAACTCCAGCC 900
Query 935 GTGCGTCGTGTTATGATCGCCGCAATCGGAATCCATTTCTTCCAGCAAGCTTCCGGTATC 994
|||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||
Sbjct 901 GTGCGTCGTGTTATGATCGCTGCACTAGGAATCCATTTCTTCCAGCAAGCTTCAGGTATC 960
Query 995 GACGCGGTGGTTCTCTTCTCACCGCGAATTTTCAAAACCGCCGGACTCAAAACCGATCAC 1054
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GACGCGGTGGTTCTCTTTTCACCGCGAATTTTCAAAACCGCCGGACTCAAAACCGATCAT 1020
Query 1055 CAACAGCTTCTAGCGACTGTAGCAGTAGGAGTAGTGAAGACATCATTCATACTAGTCGCC 1114
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1021 CAACAGCTTCTAGCGACTGTAGCGGTAGGAGTGGTGAAGACATCGTTCATACTAGTCGCC 1080
Query 1115 ACTTTCTTACTCGACAGAATCGGGAGAAGACCATTGCTTCTAACCAGCGTAGGAGGAATG 1174
||||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1081 ACTTTCTTACTGGACCGAATCGGAAGAAGACCCTTGCTTCTAACCAGCGTCGGAGGAATG 1140
Query 1175 GTACTATCTCTAGCAGCGTTAGGGACTTCTCTAACGATTATAGACCAGTCAGAGAAGAAA 1234
|||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1141 GTACTATCACTAGCGGCGTTAGCAACTTCTCTAACGATTATAGACCAGTCGGAGAAGAAA 1200
Query 1235 GTGATGTGGGCTGTGGTTGTAGCTATAGCTACGGTGATGACTTATGTAGCTACGTTTTCG 1294
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 GTGATGTGGGCTGTGGTGGTAGCTATAGCGACGGTGATGACTTATGTAGCTACGTTTTCG 1260
Query 1295 ATAGGAGCTGGACCGATAACTTGGGTTTATAGCTCGGAGATATTCCCGTTGAGGTTGAGA 1354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTGGAGCTGGACCGATAACTTGGGTTTATAGCTCGGAGATATTCCCGTTGAGGTTGAGA 1320
Query 1355 TCACAGGGCTCGAGTATGGGTGTGGTGGTGAACAGAGTGACTAGTGGTGTGATCTCGATA 1414
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1321 TCACAGGGTTCGAGTATGGGTGTGGTGGTGAACAGAGTGACTAGTGGTGTGATTTCGATG 1380
Query 1415 TCGTTTCTTCCAATGTCGAAAGCGATGACTACTGGTGGAGCGTTTTACTTGTTTGGAGGG 1474
|||||||||| ||||||||| ||| || || |||||||||||||||||||| |||||
Sbjct 1381 GCGTTTCTTCCTTTGTCGAAAGGGATAACCACCGGTGGAGCGTTTTACTTGTTCGGAGGA 1440
Query 1475 ATTGCGACTGTGGCTTGGGTTTTCTTTTACACTTTCTTGCCGGAGACGCAAGGGAGGATG 1534
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ATTGCGACAGTAGCTTGGGTTTTCTTTTACACTTTCTTGCCGGAGACGCAAGGGAGGATG 1500
Query 1535 CTTGAGGATATGGATGAGCTTTTCAGTGGTTTCAGGTGGAGAGATTCCAAGAGTAAGCCT 1594
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1501 CTTGAGGATATGGATGAGCTTTTCAGTGGTTTCAGGTGGAGAGATTCCAAGAATAAGCCT 1560
Query 1595 AAGGGTAACCCCGAGAAGACGGTACCGAATCCCGAGGTTGAGATTGGATCAAACAAGCAG 1654
||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1561 AAGAGTAACCCCGAGAAGACGGTTTCGAATCCCGAGGTCGAGATTGGATCAAACAAGCAG 1620
Query 1655 TGGAAGGAAGGAGACACACAAAGTTCGTAGGAAATTTGATCAGATATG 1702
|||| ||||| | |||||||||||||||| ||||||||| |||||||
Sbjct 1621 TGGAGGGAAG-A--CACACAAAGTTCGTAGAAAATTTGATAAGATATG 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5