BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18850.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318646 jgi|Araly1|318646|fgenesh1_pm.C_scaffold_3001662 1857 0.0
> Ahg318646 jgi|Araly1|318646|fgenesh1_pm.C_scaffold_3001662
Length=1128
Score = 1857 bits (1005), Expect = 0.0
Identities = 1088/1129 (96%), Gaps = 2/1129 (0%)
Strand=Plus/Plus
Query 189 ATGGaaaaaaaGAGTGTACCAAA-TTCTGATAAGTTGTCTCTGATTAGAGTGTTAAGAGG 247
|||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAAGAAGAGCGTA-AAAATTTCTGATAAGTTGTCTCTGATTAGAGTGTTAAGAGG 59
Query 248 TATAATATGTCTGATGGTGTTAGTTTCAACAGCTTTTATGATGTTGATATTCTGGGGGTT 307
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 TATAATATGTCTGATGGTGTTAGTTTCAACAGCTTTTATGATGTTAATATTCTGGGGGTT 119
Query 308 CTTATCAGCTGTAGTGTTGAGGCTTTTCAGCATTCGCTATAGCCGTAAATGTGTTTCCTT 367
| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 120 CCTATCAGCTGTAGTTTTGAGGCTTTTCAGCGTACGCTATAGCCGTAAATGTGTTTCCTT 179
Query 368 CTTCTTTGGCTCGTGGCTCGCCTTGTGGCCTTTCCTCTTTGAGAAGATTAACAAAACCAA 427
||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 180 CTTCTTTGGTTCGTGGCTCGCCTTGTGGCCCTTCCTCTTTGAGAAGATTAACAGAACCAA 239
Query 428 AGTTATCTTCTCTGGTGATAAGGTTCCTTGCGAGGATCGAGTATTGCTCATTGCAAACCA 487
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 AGTTATCTTCTCTGGCGATAAGGTTCCTTGTGAGGATCGAGTATTGCTCATTGCAAACCA 299
Query 488 CCGAACAGAAGTTGATTGGATGTACTTCTGGGATCTTGCACTGCGTAAAGGCCAGATTGG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGAACAGAAGTTGATTGGATGTACTTCTGGGATCTTGCACTGCGTAAAGGCCAGATTGG 359
Query 548 GAATATCAAATATGTGCTTAAGAGTAGTTTGATGAAATTACCTCTCTTTGGTTGGGCGTT 607
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAATATAAAATATGTGCTTAAGAGTAGTTTGATGAAATTACCTCTCTTTGGTTGGGCGTT 419
Query 608 TCACCTCTTTGAGTTTATTCCAGTTGAGAGGAGATGGGAAGTCGATGAAGCAAACTTGAG 667
||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 420 TCACCTCTTTGAGTTTATTCCCGTTGAGCGGAAATGGGAAGTCGATGAAGCAAACTTGAG 479
Query 668 ACAGATAGTTTCGAGTTTTAAGGATCCCCGAGACGCTTTATGGCTTGCTCTTTTCCCCGA 727
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCAGATACTTTCGAGTTTTAAGGATCCCCGAGACGCTTTATGGCTTGCTCTTTTCCCCGA 539
Query 728 GGGCACAGATTACACAGAGGCTAAATGCCAAAGGAGTAAGAAATTTGCTGCTGAAAATGG 787
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 GGGCACAGATTACACAGAGGCTAAATGCGAAAGGAGTAAGAAATTTGCTGCTGAAAATGG 599
Query 788 CCTTCCGATACTGAACAACGTGCTGCTTCCCAGGACAAAAGGTTTCGTCTCCTGCTTGCA 847
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 CCTTCCAATACTGAACAACGTGCTGCTTCCCAGGACAAAAGGTTTCTTCTCCTGCTTGCA 659
Query 848 AGAACTGAGTTGCTCACTTGACGCAGTTTATGATGTGACCATCGGTTATAAAACCCGCTG 907
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAATTGAGTTGCTCACTTGATGCAGTTTATGATGTGACCATCGGTTATAAAACCCGCTG 719
Query 908 CCCATCTTTCTTAGACAACGTTTATGGAATTGAGCCATCAGAAGTTCACATCCACATCCG 967
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CCCATCTTTCTTAGACAATGTCTATGGAATTGAGCCATCAGAAGTTCACATTCACATCCG 779
Query 968 TCGTATCAACCTGACCCAAATCCCAAATCAAGAAAAGGACATCAATGCTTGGTTAATGAA 1027
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCGTATCAACCTAACCCAAATCCCAAATCAAGAAAAGGACATCAATGCTTGGTTAATGAA 839
Query 1028 CACATTCCAGCTCAAAGACCAGCTGCTCAATGACTTTTACTCCAATGGTCATTTCCCTAA 1087
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 840 CACATTCCAGCTCAAAGACCAGCTGCTCAATGACTTTTACTCCAATGGCCATTTCCCGAA 899
Query 1088 CGAAGGAACAGAGAAAGAGTTCAACACAAAGAAGTACCTCATAAACTGTTTGGCAGTGAT 1147
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 CGAAGGAACAGAGAAAGAGTTCAACACAAAGAAGTACCTCATAAACTGCTTGGCAGTGAT 959
Query 1148 TGCCTTCACCACCATCTGTACACATCTCACCTTCTTCTCATCAATGATTTGGTTCAGGAT 1207
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 960 TGCCTTCACCACCATCTGTACGCATCTCACCTTCTTCTCATCAATGATTTGGTTCAAGAT 1019
Query 1208 TTATGTCTCTTTGGCCTGTGTCTACTTGACCTCTGCTACGCATTTCAATCTTCGTTCTGT 1267
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 TTATGTCTCTTTGGCCTGTGCCTACTTGACCTCTGCTACACATTTCAATCTTCGTTCTGT 1079
Query 1268 TCCACTTGTTGAGACTGCAAAAAATTCCCTCAAATTAGTAAACAAATAA 1316
|||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1080 TCCACTTGTTGAGACTGCAAAAAAAGCCTTCAAATTACTAAACAAATAA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5