BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18870.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929776 jgi|Araly1|929776|scaffold_302233.1 1256 0.0
Ahg479402 jgi|Araly1|479402|fgenesh2_kg.3__2103__AT3G18860.1 99.0 6e-20
> Ahg929776 jgi|Araly1|929776|scaffold_302233.1
Length=872
Score = 1256 bits (680), Expect = 0.0
Identities = 790/841 (94%), Gaps = 16/841 (2%)
Strand=Plus/Plus
Query 1 CGATATGGCTGTTATTGCTTCACTTCATCAtcttcaacctctctcgtc-tt-tc-tcgtc 57
||||||||||||||||||||||| | ||||||||||||||||||||| || || |||||
Sbjct 17 CGATATGGCTGTTATTGCTTCAC-T--TCATCTTCAACCTCTCTCGTCTTTCTCGTCGTC 73
Query 58 -tc--ctcct--t-ctccttcaagctcta-agcctctctatctAAAATTCCAAACCTCAC 110
|| ||||| | ||||||||||||||| | ||||||||||| |||||||||||||| |
Sbjct 74 GTCTTCTCCTCCTCCTCCTTCAAGCTCTACA-CCTCTCTATCTCAAATTCCAAACCTCGC 132
Query 111 ACCGTGAAAATCTAAGACACCTTTCTTCTCTCGGAATTGTTCCTCAGAATCCCCGACTTG 170
||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 133 ACCGTAAAAATCTAAGACACCTTTCTTCGCTCGGAATTGTTCCTCCGAATCCCCGACTTG 192
Query 171 CTCCTCCGGCGAATGATCTTTCCGTTATCCTCTCCGCCGTGAATC-TCCTCAAATCGAAA 229
|||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||
Sbjct 193 CTCCTCCGGCGAATGATCTTCCCGTTATCTTCTCCGCCGTGAA-CTTCCTCAAATCGAAA 251
Query 230 GGAATCTCCGACGAAGATTTCCCACGCCTCGTTTTCCTCTGTCCACAGCTCTTCTCGCCC 289
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 252 GGAATCTCCGACGAAGATTTCCCACGACTCGTATTCCTCTGTCCACAGCTCTTCTCTCCC 311
Query 290 ACTTTCGACATCTCTAAACTCGATCCCGTCTTCGATTTTCTCACCGGCGAGCTTGGAGCT 349
||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 312 ACTTTCGACATTTCTAAAATCGACCCCGTCTTCGATTTTCTCACCGGCGAGCTCGGAGCT 371
Query 350 TCCGCAGAAGAATCCAGGGGCTTAATCGTAAATTGCCCGAACATCCTCTTCTCCGACGTT 409
||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 372 TCCACAGAAGAATCCAGGGGCTTAATCGTAAATTGCCCGAACATTCTCCTCTCCGACGTA 431
Query 410 GAGTATTGCTTGAGACCGACGCTTGTTTACCTTAAGGAGCTAGGGGTACGGAATCTGAAC 469
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 432 GAGTATTGCTTGAGGCCGACGCTTGTTTACCTTAAGGAGCTAGGGTTACGGAATCTGAAC 491
Query 470 CGAGCCAGCAAGACGAACGCGCACGTGCTGAACACGAGAGTTGAGAAGCTAAGAGCAAAG 529
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 492 CGAGCTAGCAAGATGAACGCGCACGTGCTGAACACGAGAGTTGAGAAGCTAAGAGCTAAG 551
Query 530 ATGAGATTCTTGAAGAGTATAGGTTTCGAACACGAGGAAGCAGCTAGAGTCTGTGGGAGA 589
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 552 ATGAGATTCTTGAAGAGTATAGGATTCGAACACGAAGAAGCAGCTAGAGTCTGTGGGAGA 611
Query 590 ATCCCGGCGATATTCGGATACAGTGTTGAAGATAACTTGAGGCCCAAGTTCGAGTTTCTC 649
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 612 ATCCCGGCGATATTCGGATACAGTGTTGACGATAACTTGAGGCCCAAGTTCGAGTTTCTG 671
Query 650 GTTTACGACATGGAAAGAGAACTTGAAGAGCTCAAGAAGTTTCCGCAGTATTTTGCGTTT 709
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 672 GTTTACGACATGGAAAGAGAACTTGAAGAGCTCAAGAAGTTTCCTCAGTATTTTGGGTTT 731
Query 710 AGCTTGGGGAAGAGGATAAGGCCAAGACATTGGCATTTGAAGAAGAAGAACGTTAGGGTT 769
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 732 AGCTTGGGGAAGAGGATAAAGCCAAGACATTGGCATCTGAAGAAGAAGAACGTTAGGGTT 791
Query 770 TCGCTTAGTAGAATGTTAATGTGGGGTGATCAAAAATTCTACTCAAAATGGAAGCCATAA 829
|| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 792 TCACTTAGTAGAATGTTAATGTGGGGTGATCATAAATTTTACTCCAAATGGAAGCCATAA 851
Query 830 G 830
|
Sbjct 852 G 852
> Ahg479402 jgi|Araly1|479402|fgenesh2_kg.3__2103__AT3G18860.1
Length=2457
Score = 99.0 bits (53), Expect = 6e-20
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 883 AAAAGTTGAATTGCATTTCAAGGAAAAGTGATTTTGAATCATATGAAAATTCTTGAGGGA 942
|||| |||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||
Sbjct 2457 AAAATTTGAATTGCATTTCAAGGAAAAGTGATTCTGAATCATACGAAAAATGTTGAGGGA 2398
Query 943 ATCATTGAAAATTCAAA 959
||||| ||||| ||||
Sbjct 2397 ATCATCCAAAATCCAAA 2381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5