BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G18880.1

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479404 jgi|Araly1|479404|fgenesh2_kg.3__2105__AT3G18880.1         505    2e-142


> Ahg479404 jgi|Araly1|479404|fgenesh2_kg.3__2105__AT3G18880.1
Length=429

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 315/336 (94%), Gaps = 0/336 (0%)
 Strand=Plus/Plus

Query  34   AGCTCGTTAGGAAAAATGAAGGCAGTGATAGGGACAGTGGTGTCGAACAAAATGCAGATG  93
            |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct  1    AGCTCGTTCGGGAAAATGAAGGCAGTGATAGGCACAGTGGTGTCGAACAAAATGCAGAAG  60

Query  94   TCGGTGGTGGTAGCCGTCGACAGACTCTTCCACAATAATATCTACAATCGATATGTCAAG  153
            ||||| ||||| |||||||| ||||| ||||| || ||  ||||||||||||||||||| 
Sbjct  61   TCGGTAGTGGTCGCCGTCGATAGACTTTTCCATAACAAGCTCTACAATCGATATGTCAAA  120

Query  154  CGTACTTCCAAGTTCATGGCTCACGATGAAAAGGACTCCTGTAACATCGGCGATCGAGTG  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGTACTTCCAAGTTCATGGCTCACGATGAAAAGGACTCCTGTAACATCGGCGATCGAGTG  180

Query  214  AAATTGGATCCTTCAAGGCCTTTGAGCAAGCATAAGCATTGGATTGTTTCAGAAATCATA  273
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  181  AAATTGGATCCTTCAAGGCCTTTAAGCAAGCATAAGCATTGGATTGTTTCAGAGATCATA  240

Query  274  AAGAAAGCACGCATTTATTCTCCACAAGCTGCTGCTGCGGCTCTCAATTCCTCAACCTCC  333
            |||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||||
Sbjct  241  AAGAAAGCACGCATTTATTCTCCACAGGCTGCTGCTGCTGCTCTCAATTCCTCCTCCTCC  300

Query  334  ATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAGTT  369
            |||||||||||| | |||||||||||||||||||||
Sbjct  301  ATTGCTGAGCAGTCTCCTGTTTCGTCTTCCTAAGTT  336


 Score = 91.6 bits (49),  Expect = 6e-18
 Identities = 65/72 (90%), Gaps = 4/72 (6%)
 Strand=Plus/Plus

Query  421  CGTAGCACCATCAGAAACAGAGAATGTGGTAACTTCG--AACATAATCCATCAAGCTGTA  478
            ||||| | ||||| |||||||||||||||||| || |  |||||||||||||||||||||
Sbjct  360  CGTAGAATCATCATAAACAGAGAATGTGGTAA-TT-GACAACATAATCCATCAAGCTGTA  417

Query  479  GTGTAGTGCTTT  490
            ||||||||||||
Sbjct  418  GTGTAGTGCTTT  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20756640416


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5