BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18890.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479405 jgi|Araly1|479405|fgenesh2_kg.3__2106__AT3G18890.1 2215 0.0
> Ahg479405 jgi|Araly1|479405|fgenesh2_kg.3__2106__AT3G18890.1
Length=2349
Score = 2215 bits (1199), Expect = 0.0
Identities = 1323/1384 (96%), Gaps = 4/1384 (0%)
Strand=Plus/Plus
Query 65 TGTAGTAGTGTTTTCGTGATAGAAAATTTTCAAAGTTAATGTGCA-TACACTAGCTAGTG 123
|||| |||||||||||||||||||||||||||||||||||| ||| || ||| ||| |
Sbjct 33 TGTACTAGTGTTTTCGTGATAGAAAATTTTCAAAGTTAATGAGCATTA-GCTAAATAGAG 91
Query 124 AAGAAGAAGAAGACTAACTAAGAATGGAAGGAACTTGTTTTCTCCGTGGACAACCTCTCA 183
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 92 AAGAAGAAGAAGACTAAAGAACAATGGAAGGAACTTGTTTTCTCCGTGGGCAACCTCTCA 151
Query 184 CAACAATACCCTCTCTTCCCAGCAGAAAAGGGTTTCTTCTCCAAAGATGGAAGACCAATC 243
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 CCACAATACCATCTCTTCCCAGCAGAAAAGGGTTTCTTCTCCAAAGATGGAAGACCAATC 211
Query 244 GGATTGTCAGGTTTTCAGGTTTTAAGAATCACTCGGTTTCTGGAAAGTCGAGGTCTTTCG 303
| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 212 GTATTGTCAGGTTTTCTGGTTTAAAGAATCACTCGGTTTCTGGAAAGTCCAGGTCTTTCG 271
Query 304 ATCTTAGCCTCAGAG-CTTCAGGTCCCATTAGAGCAAGCTCTGTAGTAACAGAAGCAAGC 362
||||||| |||| | | ||||||||||| ||||||||||||| |||||||||| ||| |
Sbjct 272 ATCTTAGTTTCAG-GTCATCAGGTCCCATAAGAGCAAGCTCTGCAGTAACAGAAACAAAC 330
Query 363 CCTACCAACTTAAATTCCAAAGAAGAAGACCTTGTCTTTGTAGCCGGTGCTACTGGTAAA 422
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CCTGCTAACTTAAATTCCAAAGAAGAAGACCTTGTCTTTGTAGCCGGTGCTACTGGTAAA 390
Query 423 GTTGGTTCTAGAACTGTGAGAGAGCTACTGAAGCTGGGATTTCGGGTTAGAGCTGGAGTT 482
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 391 GTTGGTTCTAGAACTGTGAGAGAGCTACTGAAGCTCGGATTTCGGGTTAGAGCTGGAGTT 450
Query 483 CGAAGTGCTCAGAGAGCAGGAAGTCTTGTGCAAAGTGTTAAGGAAATGAAGCTCCAGAAC 542
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 451 CGAAGCGCTCAGAGAGCAGGAAGTCTTGTGCAATGTGTTAAGGAAATGAAGCTCCAGAAC 510
Query 543 ACAGATGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAG 602
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ACTGATGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAG 570
Query 603 AAAGATTCAATACAGCCCGCATTGGGAAATGCATCGGTGATTATATGCTGTATTGGTGCT 662
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 571 AAAGATTCAATACAGCCCGCATTGGGAAATGCATCAGTGATTATATGCTGTATCGGTGCT 630
Query 663 AGCGAGAAAGAGATCTCCGATATTACCGGTCCTTACAGGATCGATTACCTAGCCACCAAA 722
||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 631 AGCGAGAAAGAGATCTCTGATATTACCGGCCCTTACAGGATTGATTACCTCGCCACCAAA 690
Query 723 AACCTTGTTGATGCTGCAACATCAGCAAAAGTTAATAACTTCATTTTGGTGACATCCTTG 782
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 691 AACCTTGTTGATGCTGCAACATCTGCAAAAGTTAATAACTTCATTTTGGTGACATCCTTG 750
Query 783 GGGACAAATAAATTTGGATTTCCCGCTGCGATTCTCAACCTATTCTGGGGAGTTCTTTGC 842
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 751 GGGACAAATAAATTTGGATTTCCTGCTGCGATTCTCAACCTATTCTGGGGAGTTCTTTGT 810
Query 843 TGGAAGAGAAAAGCTGAAGAAGCATTGATTGAAAGCGGTCTTAATTACGCAATAGTTAGA 902
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 811 TGGAAGAGAAAAGCTGAAGAAGCATTGATTGCAAGCGGTCTCAATTACGCAATAGTTAGA 870
Query 903 CCTGGAGGAATGGAGAGACCGACTGATGCATACAAAGAAACTCATAATCTCACTCTTGCT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 871 CCTGGAGGAATGGAGAGACCGACTGATGCATACAAAGAAACTCATAATCTCACTCTTTCT 930
Query 963 CTAGACGATACATTGTTTGGTGGTCAGGTCTCAAATCTCCAGGTTGCAGAGTTGCTTGCT 1022
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 931 CTAGACGATACATTGTTTGGTGGTCAGGTCTCAAATCTCCAGGTGGCAGAGTTGCTTGCT 990
Query 1023 TGCATGGCAAAGAATCCTCAACTTTCTTTCTCTAAGATTGTGGAAGTGGTTGCTGAAACA 1082
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 991 TGCATGGCAAAGAATCCTCAACTTTCTTTCTCCAAGATTGTGGAAGTGGTTGCTGAAACA 1050
Query 1083 ACTGCACCATTAACTCCAATTGAAAAGCTTCTTGAAAAGATTCCTTCCAAACGGCCTTAT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1051 ACTGCACCATTAACTCCAATTGAAAAGCTTCTTGAAAAGATTCCTTCCAAACGTCCTTAT 1110
Query 1143 GTCCCTCCACCGAAGGCATCAGTTGCAACCAAAGAGGTCAAACCAGTCCCTACTAAGCCT 1202
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1111 GTGCCTCCACCGAAGGCATCAGTTGCAGCCAAAGAGGTCAAACCAGTCCCTACTAAGCCT 1170
Query 1203 GTCACTCAAGAACCAACAGCTCCTAAAGAGGATGAAGCACCTCCAAAAGaaaaaaaTGTG 1262
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1171 GTCACTCAAGAGCCAACAGCTCCCAAAGAGGATGAAGCACCTCCAAAAGAAAAAGATGTG 1230
Query 1263 AAACCTAGGCCGCTGTCTCCTTATGCCTCCTACGAAGACTTGAAACCTCCAACATCTCCT 1322
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1231 AAACCTAGGCCGCTGTCTCCTTATGCCGCCTACGAAGACTTGAAAACTCCAACATCTCCT 1290
Query 1323 ATTCCAAATTCGACCACATCGGTCAGTCCTGCCAAATCTAAGGAGGTAGATGCCACTCAG 1382
||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 1291 ATTCCAAGTTCGACCACATCAGTCGGTCCTGCCAAATCTAAGGAAGTAGATGCCACTCAG 1350
Query 1383 GTTCCTGTTGAGGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCAGTAGTA 1442
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GTTCTTGTTGATGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCAGTAGTA 1410
Query 1443 GAAG 1446
||||
Sbjct 1411 GAAG 1414
Score = 887 bits (480), Expect = 0.0
Identities = 692/785 (88%), Gaps = 51/785 (6%)
Strand=Plus/Plus
Query 1439 AGTAGAAGTAAAGCAAGTTGAGGAAAAGAAAGAGAGGCCTCTTTCCCCTTATGCCCGCTA 1498
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 AGTAGAAGTAAAGCAAGCTGAGGAAAAGAAAGAGAGGCCTCTTTCCCCTTATGCCCGCTA 1502
Query 1499 TG-AGAACCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGAGTACCAGAAAGAGTG 1557
|| || | |||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 1503 TGAAG-ATCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGGGTACCAAAAAGAATG 1561
Query 1558 ATTCTTTGTCGCCTGGTCCAACCGATTCTGATACTGATAAAAG-----C---T-CAAC-A 1607
|||||||||||||||||||||| |||||||||||||||||||| | | |||| |
Sbjct 1562 ATTCTTTGTCGCCTGGTCCAACAGATTCTGATACTGATAAAAGCTCAACAGTTGCAACAA 1621
Query 1608 --GT---T--G-CA--A----AAAC---TGTCACTGAGACGGCAGTTGCAACAAGTGTCA 1650
|| | | || | |||| || ||||||||| ||||||| |||||||||||
Sbjct 1622 GTGTCACTGAGACAGCAGTTGAAACAAGTGCCACTGAGACAGCAGTTGAAACAAGTGTCA 1681
Query 1651 CTGAGACCTCAGTTGCAACAAGTGTACCTGAGACAGCAGTTGCAACGAGTGTCACTGAGA 1710
||||||| |||||| ||||||||| |||||||||||||||||| | |||| ||||||||
Sbjct 1682 CTGAGACAGCAGTTGAAACAAGTGTCCCTGAGACAGCAGTTGCATCAAGTGCCACTGAGA 1741
Query 1711 CAGCAGCACCAGCCACATCAAAAATGAGGCCTCTTTCTCCTTATGCAATTTACGCAGACC 1770
||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1742 CAGCAGCCCCAGCCACACCAAGAATGAGGCCTCTTTCTCCTTATGCAGTTTACGCAGACC 1801
Query 1771 TGAAACCACCAACCTCACCAACTCCTGCATCAACAGGTCCCAAGGAAGCAGCATC----- 1825
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1802 TGAAACCACCAACCTCACCAACTCCTGCATCAACTGGTCCCAAGGAAGCAGCATCTGAGA 1861
Query 1826 T----G----T--AGAAGACAACTCAGAGTTACCTGGAGGCAATAATGATGTGCTGAAAA 1875
| | | |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1862 TAACAGCATCTGCAGAAGATAACTCAGAGTTGCCTGGAGGCAATAATGATGTGCTGAAAA 1921
Query 1876 CAGTTGATGGAAATCTGAACACAATTCCACCTTC-T--ACACCGGAAGCAGTACCTGTTG 1932
|||||||||||| | ||||||| | |||| |||| | | ||||||||||||||||||||
Sbjct 1922 CAGTTGATGGAAGTGTGAACACTACTCCATCTTCCTCTATACCGGAAGCAGTACCTGTTG 1981
Query 1933 TTAGCAGTGCGATAGACACTTCCCTTGCTTCAGGAGACAATACAGCTCAGCCAAAGCCAA 1992
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1982 TTAGCAATGCGATAGACACTTCCCTTGCTTCAGAAGACAATACAGCTCAGCCAAAGCCAA 2041
Query 1993 GGCCTTTATCACCTTACACAATGTACGCGGACATGAAGCCTCCAACATCACCACTTCCAT 2052
|||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2042 GGCCCTTATCACCTTATACAATGTACGAGGACATGAAGCCTCCAACATCACCACTTCCAT 2101
Query 2053 CTCCAGTCACCAATCATTAGCTATGTGAGACGAGAATTGGCCTCCTAAACCCTGGAGCTT 2112
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2102 CTCCAGTCATCAATCATTAGTTATGTGAGACGAGAATTGGCCTCTTAAACCCTGGAGCTT 2161
Query 2113 CTTCTTAATTGCAGGTTGTAAACAATGAGTAAG--AGA--GTGATGGGGCAATTCAGTTT 2168
|||||||||||||| || |||||| ||||| || ||| | ||||||||||||||||||
Sbjct 2162 CTTCTTAATTGCAGATTATAAACAGTGAGTGAGTGAGAAAGAGATGGGGCAATTCAGTTT 2221
Query 2169 TGCAG 2173
|||||
Sbjct 2222 TGCAG 2226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5