BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18900.2
Length=2500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667 2242 0.0
Ahg929832 jgi|Araly1|929832|scaffold_302289.1 252 1e-65
Ahg952175 jgi|Araly1|952175|scaffold_43900002.1 134 4e-30
Ahg930677 jgi|Araly1|930677|scaffold_303134.1 134 4e-30
Ahg933273 jgi|Araly1|933273|scaffold_401261.1 100 4e-20
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 62.1 2e-08
Ahg948509 jgi|Araly1|948509|scaffold_800396.1 56.5 9e-07
Ahg930838 jgi|Araly1|930838|scaffold_303295.1 56.5 9e-07
Ahg930837 jgi|Araly1|930837|scaffold_303294.1 54.7 3e-06
Ahg930018 jgi|Araly1|930018|scaffold_302475.1 52.8 1e-05
> Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667
Length=2421
Score = 2242 bits (1214), Expect = 0.0
Identities = 1606/1785 (90%), Gaps = 68/1785 (4%)
Strand=Plus/Plus
Query 1 ATGACGACAAGAACTTCGAATCACAAACGTTCTAGAAGCGATCCGGTCCCAAGAAAATCT 60
|||||||||||||| ||||| || ||||||||||||||||| || ||||| |||||||||
Sbjct 1 ATGACGACAAGAACATCGAAACATAAACGTTCTAGAAGCGACCCCGTCCCTAGAAAATCT 60
Query 61 CTCAAGAATAAAAAATCAAGCGAGGCCCTTT---ACA---A-C-A-TTCACATGGATGAA 111
|||||||| || |||||||| || |||||| ||| | | | ||||||||||||||
Sbjct 61 CTCAAGAACAAGAAATCAAGTGAAACCCTTTACAACATCGATCGATTTCACATGGATGAA 120
Query 112 CTTTTGCAGAGAGAGATAGAACAGCTAAAATCTCTTTTAAAGTCCAGAAAATTACATCCC 171
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 CATTTGCAGAGAGAGATAGAACAGCTAAAATCTCTTCTAAAGTCCAGAAAATTACAT-CC 179
Query 172 GGGGGCAGGAGAGTCTCAAGTGATGAGATTGATTTATTGCTTCAAGAAGATGAAGTCTTA 231
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 -----CAAGAGAGTCTCAAGTGATGAGATTGATTTGTTGCTTCAAGAAGATGAAGTCTTA 234
Query 232 GTTCGGCGTGAAATGAAGACAGTCCTTGGACGCAAACTGTTCTTGGAAGATTCTAAAAAT 291
|| ||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 235 GTACGGCGAGAAATGGAGACAGTCATTCGACGCAAACTGTTCTTGGAAGATTCTAAAAAT 294
Query 292 GAAGATTCTTCTATCCCCAAGGAGGCGAAGAAACTGGTGGA-GGAAATAGCGGGTTTGGA 350
|||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 295 GAAGATTCTTCTATCCCCAAGGAGGCAAAGAAACTGGT-GAGGGAAATCGCGGGTTTGGA 353
Query 351 GCTGCAAGTGATGTACTTAGAAACATATCTTCTTTTGTTATACCGGAGATTCTTCAACAA 410
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 354 GCTGCAAGTGATGTACTTAGAAACATATCTTCTTTTGTTATATCGAAGATTCTTCAACAA 413
Query 411 CAAAATTACATCT-AAGTTAGAATCAGAAGAGAAAGAGAGATCAGAGGATCTTCTTGAGT 469
||||||||||||| || ||| ||||||| | |||||||| |||||| | | |||||| |
Sbjct 414 CAAAATTACATCTGAA-TTAAAATCAGAGGGGAAAGAGATATCAGAAGCTATTCTTGGGA 472
Query 470 GTACCAAACTCATTGATTCA-CCaaaaaaaGGAGTCTGCAGCCCGCAGAAACTTGTAGAA 528
| || ||| ||| ||||||| ||||||| | ||||||||| ||||||||| ||||||||
Sbjct 473 GCACTAAAGTCACTGATTCACCCAAAAACA-CAGTCTGCAGTCCGCAGAAAGTTGTAGAA 531
Query 529 GACTCTGGAATATTCCGCAGTCACTCATCGTTGTCTCATTGTTCAGGCTATTCCTTTAGA 588
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 532 GACTCTGGAATCTTCCGCAGTCACTCATCCTTGTCTCATTGTTCAGGCTATTCCTTTAGA 591
Query 589 ATGTCTCCCCATGCAATGGACTCATCATATCATCGATCTCTTCCTTTCTCAATGCTTGAG 648
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 ATGTCTCCCCAAGCAATGGACTCGTCATATCATCGATCTCTTCCTTTCTCAATGCTTGAG 651
Query 649 CAATCTGATATCGATGAGTTGATTGGGACATATGTTTCTGAAAACGTTCATAAGTCACCA 708
||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 652 CAATCCGATATCGATGAAATGATCGGGACATATGTTTCTGAAAACGTTCATAATTCACCA 711
Query 709 AATAGTTTATCTGAAGAGATGGTCAAGTGCATCTCAGAATTATGTCGTCAACTTG-TGGA 767
|||||||| |||||||||||| |||||||||||| | || ||| ||||||||||| | ||
Sbjct 712 AATAGTTTGTCTGAAGAGATGATCAAGTGCATCTTACAAGTATTTCGTCAACTTGCT-GA 770
Query 768 TCCAGGATCACTCGACAATGATCTAGAATCGAGCAGTCCTTTCCGCGGGAAAGAGCCTCT 827
||||| ||||||||| |||||| |||| | ||||||||||||||||||||||||| ||
Sbjct 771 TCCAGAATCACTCGATGATGATCGAGAAACAAGCAGTCCTTTCCGCGGGAAAGAGCGACT 830
Query 828 GAAGATCATTAGTCGACCTTACGACAAGTTATTAATGGTGAAATCGATTA-GTAGAGACT 886
|||| ||||| |||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 831 GAAGGTCATTTGTCGACCTTACGACAAATTATTAATGGTGAAATCGA-TATGTAGAGACC 889
Query 887 CAGAGAAGTTAAATGCAGTTGAACCTGCTTTGAAACATTTCAGGTCGCTTGTTAATAAGT 946
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CAGGGAAGTTAAATGCAGTTGAACCTGCTTTGAAACATTTCAGGTCGCTTGTTAATAAGT 949
Query 947 TAGAAGGAGTGAATCCAAGGAAGTTAAATCATGAAGAAAAGCTAGCTTTCTGGATTAATA 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 950 TAGAAGGAGTGAATCCAAGGAAGTTAAATCATGAAGAAAAGCTAGCTTTCTGGATTAACA 1009
Query 1007 TACACAACTCTCTGGTTATGCATTCGATACTTGTCTATGGGAACCCTAAAAACAGTATGA 1066
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1010 TACACAACTCTCTGGTTATGCATTCGATAATTGTCTATGGGAACCCTAAAAACAGTATGA 1069
Query 1067 AAAGAGTATCTGGGTTGCTGAAGGCAGCTTACAACGTTGGAGGTCGAAGCTTGAACTTAG 1126
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1070 AAAGGGTATCTGGGTTGCTGAAGGCAGCGTACAACGTTGGAGGTCGAAGCTTGAACTTAG 1129
Query 1127 ATACCATTCAGACTTCAATCCTTGGTTGCCGTGTATTTAGGTTCTTGTTTGCTTCTAGAT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ATACCATTCAGACTTCAATCCTTGGTTGCCGTGTATTTAGGTTCTTGTTTGCTTCTAGAT 1189
Query 1187 CAAAGGGTAGAGCTGGAGATTTAGGAAGAGATTATGCTATAACTCAC-CGTGAGTCTCTA 1245
|||| |||| |||||||||||||||||||||||||||| |||||||| | |||| ||||
Sbjct 1190 CAAAAGGTAAAGCTGGAGATTTAGGAAGAGATTATGCTGTAACTCACTC-TGAGCCTCTT 1248
Query 1246 CTTCATTTCGCTCTTTGCTCGGGGAGCTTGTCAGATCCATCAGTTCGTATATATACCCCC 1305
||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 1249 CTTCATTTCGCTCTTTGCTCGGGGAACTTGTCAGATCCATCA------A-A----C---- 1293
Query 1306 AAGAACGTGATGATGGAGCTAGAATGTGGTAGAGAAGAGTATGTAAGATCAAACCTAGGA 1365
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 --G----TGATGATGGAGCTAGAATGTGGTAGAGAAGAGTATGTAAGATCAAACCTAGGA 1347
Query 1366 ATTTCCAAAGACAACAAGATTCTATTGCCGAAGCTTGTTGAAATATATGCCAAGGATACT 1425
|| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1348 ATATCCAAAGACAACAAGATTCTTTTGCCGAAGCTTGTTGAATTATATGCCAAGGATACT 1407
Query 1426 GAACTCTGCAACGTCGGTGTTCTTGACATGATTGGGAAATGTTTGCCTTGTGAAGCAAGA 1485
|||| |||||||||||| |||| |||||||| || || | ||| |||||||||||||||
Sbjct 1408 CAACTTTGCAACGTCGGTATTCTCGACATGATCGGCAACTTTTTTCCTTGTGAAGCAAGA 1467
Query 1486 GATAGAATCCAGAAGTGTCGCAACAAGAAGCATGGAAGATTCTCTATAGATTGGATTGCA 1545
|||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1468 GATAGAATCCAGCAGTGTCGGAACAAGAAGCATGGAAGATTCTCCATCGATTGGATT--- 1524
Query 1546 CATGATTTCAGATTCGGGAACGACTACAGGATATTTCCGAGTAGCTTCAATCTCCATGGA 1605
|| | || | | | |||||||| ||||| | |||| ||||||||||||||
Sbjct 1525 --TGG----A-AT--G--A-C---TACAGGATTTTTCCAATTAGCGTCAATCTCCATGGA 1569
Query 1606 ACTAGTCCATCTGTAGAGTTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAGCT 1665
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1570 AATAGTCCATCTCTAGAGCTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAG-T 1628
Query 1666 -GCTCCATTCGAAATATCACGAGTCTTTCACTGTGACGGCTTGTTGTTATGCACCTCCCA 1724
|||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 1629 AGCTCAATTCGAAATATCTCGAGTCCTTCACTGTGACGGCTTGTTGTTATGCTCCTCCCA 1688
Query 1725 TTTCGACGCATCTAGAGTCTTGGTTTGGAACCCTTTAACTGGTGA 1769
| |||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 1689 TGTCGACGAATCTAGAGTCTTGGTTTGGAATCCTTTAACTGATGA 1733
Score = 577 bits (312), Expect = 2e-163
Identities = 447/509 (88%), Gaps = 21/509 (4%)
Strand=Plus/Plus
Query 1774 GATATGATCCCTCCAGGCGTGAGCTTTGGATACTCTGAACTCAGTGTGTCTTTGAAGGGA 1833
||||| ||| ||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 1837 GATATCATCGCTCCAGGCGGGAGCTTTGGATACTCTGAACTTAGCGTGTCTTTGAAGGGA 1896
Query 1834 AATACTTACTGGTTGGCTATAGTTGTAACAGAAACGCCCCGCACCATATCATTGCTCAAG 1893
||||||||||||||||||| || | |||||||||||||||||| |||||| ||||||||
Sbjct 1897 AATACTTACTGGTTGGCTAGAGGTATAACAGAAACGCCCCGCATCATATCGTTGCTCAAA 1956
Query 1894 TTTGATTTTTCAATAGAGAAATCTGTACTTGTGCCTCTTCCCTATCATAGTCTTCAGAGT 1953
||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||
Sbjct 1957 TTTGATTTTTCAACAGATAAATCTGTACCTGTGCCTCTTCCCTATC---G------GAGT 2007
Query 1954 CGTCGTTTTGAAGCTAGTAGCCTTTCCGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTA 2013
|||||||| ||||||| ||| ||| | |||||||||||||| |||||||||||||||||
Sbjct 2008 CGTCGTTTCGAAGCTACTAGTCTTACTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTG 2067
Query 2014 CAGCGAGATATA-AGTTCCAAGACTGAGATATGGGTGACAAG-TAAGATTGATGACACCA 2071
|||||||||| | |||||||||||||||||||||||||| | |||||||||||| || |
Sbjct 2068 CAGCGAGATA-ACAGTTCCAAGACTGAGATATGGGTGAC-TGATAAGATTGATGAGACTA 2125
Query 2072 CCAAAGTGGTGTCTTGGAGCAAGATCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTT 2131
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2126 CCGAAGTGGTGTCTTGGAGCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTT 2185
Query 2132 GGAATGATGCAAGTTTCTTGATAGGCGAAG-AGAAGAAAGTCATCATGTG-TGAGAGA-- 2187
|||||||||||||||||||| ||||| ||| ||||||||||| ||||||| || ||||
Sbjct 2186 GGAATGATGCAAGTTTCTTGCTAGGC-AAGGAGAAGAAAGTCGTCATGTGCTGTGAGAAA 2244
Query 2188 TTGGTTGATGTGCACACG-TCCAAAGTCATGGTCTACATTGTTGGGGAGAACAATGTTGT 2246
||| |||||| | ||| | || |||| |||||||||||||||||||| | | ||||| ||
Sbjct 2245 TTGATTGATGAGAACAAGGTC-AAAGACATGGTCTACATTGTTGGGGTGGATAATGTAGT 2303
Query 2247 CACACAAGTGGAATTTGGGGTAAAT-AAA 2274
|||| ||||||||||||| ||| || |||
Sbjct 2304 CACAGAAGTGGAATTTGGAGTAGATGAAA 2332
> Ahg929832 jgi|Araly1|929832|scaffold_302289.1
Length=1182
Score = 252 bits (136), Expect = 1e-65
Identities = 295/366 (81%), Gaps = 33/366 (9%)
Strand=Plus/Plus
Query 1822 TCTTTGAAGGGAAATACTTAC-TGGTTGGCTATAGTTGTAACAGAAACGCCCCGCACCAT 1880
|||||||||||||| || ||| | ||| ||| ||| || |||| ||||| | |
Sbjct 638 TCTTTGAAGGGAAAAACATACAT-GTTTGCTTTAGATGAAACAAAAACG---TG---TGT 690
Query 1881 ATCATTGCTCAAGTTTGATTTTTCAATAGAGAAATCTGTACTTGTGCCTCTTCCCTATCA 1940
||| |||||||| | ||||| ||||| |||||||||| |||||||||||||| | ||
Sbjct 691 ATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTGTGCCTCTT--C---CA 745
Query 1941 TAGTCTTCAGAGTCGTCGTTTTGAAGCTAGTAGCCTTTCCGTTGTTAGAGAAGAGAAACT 2000
|| | |||||||| ||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 746 TA--C--AAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAGAGAAACT 801
Query 2001 TTCTGTGTTATTACAGCGAGATATAAGTTCCAAGACTGAGATATGGGTGACAAGTAAGAT 2060
||| |||||||||||| |||||| ||||| ||||||||||||||||||||||| | |
Sbjct 802 TTCAGTGTTATTACAGAGAGATAAAAGTTGCAAGACTGAGATATGGGTGACAA--A---T 856
Query 2061 TGATGAC-ACCACCAAAG---TGGTG-TCT--TGGAGCAAGATCTTAGCATTGGATTTGA 2113
|| ||| |||||||||| ||||| | | ||||||||| |||| |||||||||||||
Sbjct 857 -GA-GACCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCATTGGATTTGA 914
Query 2114 GCCCTCATCTTCAGATTTGGAATGATGCAAGTTTCTTGATAG-GCGAAGAGAAGAAAGTC 2172
|||||| |||| | |||||| |||||| ||||||||| | | | || ||||||||||||
Sbjct 915 GCCCTCTTCTTGAAATTTGGTATGATGGAAGTTTCTTTCTTGAG-GAGGAGAAGAAAGTC 973
Query 2173 ATCATG 2178
||||||
Sbjct 974 ATCATG 979
> Ahg952175 jgi|Araly1|952175|scaffold_43900002.1
Length=1157
Score = 134 bits (72), Expect = 4e-30
Identities = 239/312 (77%), Gaps = 41/312 (13%)
Strand=Plus/Plus
Query 1819 GTGTCTTTGAAGGGAAATACTTACTGGTTGGCTA-T-AGTTGTAACAGAAAC-GCCCCGC 1875
||||||||||||||||||||||||||||| ||| | || | | || |||| || | |
Sbjct 564 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCTCGTGAGAT--AGCA-AAACCGCATCTC 620
Query 1876 ACCATATCATTGCTCA-AGTTTGATTTTTCA-ATAGAGAAATC-TG-TACTT---GT--G 1926
|||||| |||||| | ||||||||| || | ||||||||| | | ||| || |
Sbjct 621 GGCATATCCTTGCTCGGA-TTTGATTTT-CAGACAGAGAAATCATCAT-CTTTTTGTTTG 677
Query 1927 CCTCTTCCCTATCATAGTCTTCAGAGTCGTCGTTTTGAAGCTA-GTAGCCTTTCCGTTGT 1985
|||||||||||||| ||| || | || | | ||| | | || |||||||| ||
Sbjct 678 CCTCTTCCCTATCAGGGTC--CA----C-TC-TAT-GAAATTTTG-AGTCTTTCCGTCGT 727
Query 1986 TAGAGAAGAGAAACTTTCTGTGTT-ATTACAGCGAGAT-ATA-AGTTCCAAGACTGAGAT 2042
|||||||||||||||||| ||||| || ||| | | | ||| | | |||||||||||||
Sbjct 728 TAGAGAAGAGAAACTTTCCGTGTTTAT-ACAACCCGTTTATACA-T-CCAAGACTGAGAT 784
Query 2043 ATGGGTGACAAGTAAGATTGATGACACCACCA--AA-GT-G--GTGTCTTGGAGCAAGAT 2096
||||||||| |||||||||||||||||||||| || | | || ||||||| |||| |
Sbjct 785 ATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGTTTCTTGGACCAAGGT 844
Query 2097 CTTAGCATTGGA 2108
|||| |||||||
Sbjct 845 CTTATCATTGGA 856
> Ahg930677 jgi|Araly1|930677|scaffold_303134.1
Length=1195
Score = 134 bits (72), Expect = 4e-30
Identities = 117/138 (85%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 1981 GTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAGCG-AGATATAAGTTCCAAGACTGA 2039
||||||||||||||||||||||||||||||||||| || | || || || | ||||| ||
Sbjct 794 GTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTACATTTACGT-CGAAGACAGA 852
Query 2040 GATATGGGTGACAAGTAAGATTGATGACACCACCAAAGTGGTGTCTTGGAGCAAGATCTT 2099
|||||||||||||| |||||||| ||| |||| || ||| |||| |||| |||| ||||
Sbjct 853 GATATGGGTGACAAATAAGATTGGTGAGACCA--AA-GTGTTGTCGTGGATCAAGGTCTT 909
Query 2100 AGCATTGGATTTGA-GCC 2116
||| ||||||||| |||
Sbjct 910 AGCGGTGGATTTGACGCC 927
> Ahg933273 jgi|Araly1|933273|scaffold_401261.1
Length=934
Score = 100 bits (54), Expect = 4e-20
Identities = 126/158 (80%), Gaps = 15/158 (9%)
Strand=Plus/Plus
Query 1981 GTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAGC--G-AGATATAAGTTCCAAGA-C 2036
|||||| |||||||||||||||||||||||||||||| | ||||| | | | |||| |
Sbjct 567 GTTGTTGGAGAAGAGAAACTTTCTGTGTTATTACAGCATGCAGATACA--T-C-AAGAAC 622
Query 2037 TGAGATATGGGTGAC-AAGTAAGATTGATGACACCACCAAAGTGGTGTCT-TGGAGCAAG 2094
|||||||||||||| || |||||||||||| |||| | || || | |||||||||
Sbjct 623 AGAGATATGGGTGACGAA-TAAGATTGATGAGACCA--AG-GTTGT-TAAGTGGAGCAAG 677
Query 2095 ATCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTTG 2132
||||| || ||||||||| ||| | ||| | |||||
Sbjct 678 GTCTTAACAGTGGATTTGAAACCTGAGCTTGATATTTG 715
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 62.1 bits (33), Expect = 2e-08
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1817 GTGTGTCTTTGAAGGGAAATACTTACTGGTTGGCTATAG 1855
||||||||||||||||||||||||||||||| ||| |||
Sbjct 306 GTGTGTCTTTGAAGGGAAATACTTACTGGTTTGCTTTAG 344
> Ahg948509 jgi|Araly1|948509|scaffold_800396.1
Length=197
Score = 56.5 bits (30), Expect = 9e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1817 GTGTGTCTTTGAAGGGAAATACTTACTGGT 1846
||||||||||||||||||||||||||||||
Sbjct 112 GTGTGTCTTTGAAGGGAAATACTTACTGGT 141
> Ahg930838 jgi|Araly1|930838|scaffold_303295.1
Length=1166
Score = 56.5 bits (30), Expect = 9e-07
Identities = 37/40 (93%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 1807 TCTGA-ACTCAGTGTGTCTTTGAAGGGAAATACTTACTGG 1845
||||| ||| |||||||||||||||||||||||||||||
Sbjct 613 TCTGATACT-GGTGTGTCTTTGAAGGGAAATACTTACTGG 651
> Ahg930837 jgi|Araly1|930837|scaffold_303294.1
Length=702
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1817 GTGTGTCTTTGAAGGGAAATACTTACTGG 1845
|||||||||||||||||||||||||||||
Sbjct 510 GTGTGTCTTTGAAGGGAAATACTTACTGG 538
> Ahg930018 jgi|Araly1|930018|scaffold_302475.1
Length=1136
Score = 52.8 bits (28), Expect = 1e-05
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 1819 GTGTCTTTGAAGGGAAATACTTACTGGT-TGG 1849
|||||||||||||||||||||||||||| |||
Sbjct 616 GTGTCTTTGAAGGGAAATACTTACTGGTGTGG 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94235266130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5