BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18910.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667 939 0.0
Ahg929832 jgi|Araly1|929832|scaffold_302289.1 494 9e-139
Ahg318596 jgi|Araly1|318596|fgenesh1_pm.C_scaffold_3001612 401 5e-111
Ahg952175 jgi|Araly1|952175|scaffold_43900002.1 172 5e-42
Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611 121 2e-26
Ahg933278 jgi|Araly1|933278|scaffold_401266.1 91.6 1e-17
> Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667
Length=2421
Score = 939 bits (508), Expect = 0.0
Identities = 641/703 (91%), Gaps = 17/703 (2%)
Strand=Plus/Plus
Query 510 GACAAGAGATCCTGGATCAAGAGCTACAAACTCTTGTGCTATTATCGTGGTACCAAATAT 569
||||| | |||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 1732 GACAACAAATCCTGGATCAAGAGCTACAAAATGTTGAGCTATTATCGTGGTACCAAATAT 1791
Query 570 TTTGAAATCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATTATCGCTCCA 629
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1792 TTTGAAATCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATCATCGCTCCA 1851
Query 630 CGG-GGGAG-TATTGGATACTCGGAACTTAGCGTGTCTCTGAAAGGAAATACTTACTGGT 687
|| ||||| | |||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 1852 -GGCGGGAGCT-TTGGATACTCTGAACTTAGCGTGTCTTTGAAGGGAAATACTTACTGGT 1909
Query 688 TCGCTAAAGGTGTAACAGAAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATTTTT 747
| |||| |||| |||||||| | || ||||||| |||||| |||||||||||||||||||
Sbjct 1910 TGGCTAGAGGTATAACAGAA-A-CG-CCCCGCATCATATCGTTGCTCAAATTTGATTTTT 1966
Query 748 -ATACAGAGAAATCTGTACCTGTGCTTCTTCCCTATCAGAGTCGTCGTCTTTTCCAAGCT 806
| ||||| |||||||||||||||| ||||||||||| |||||||||| || | |||||
Sbjct 1967 CA-ACAGATAAATCTGTACCTGTGCCTCTTCCCTATCGGAGTCGTCGT-TT--CGAAGCT 2022
Query 807 AGTAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCTAGATCAA-AG 865
| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 2023 ACTAGTCTTACTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCGAGAT-AACAG 2081
Query 866 TTCCAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCAAAGGAGCAGTTTC 925
|||||||||||||||||||||||| || |||||||||||| ||| ||| | || ||
Sbjct 2082 TTCCAAGACTGAGATATGGGTGACTGATAAGATTGATGAGACTACCGAAGT-G--GTGTC 2138
Query 926 TTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTGGGAATGATGGAAG 985
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2139 TTGGAGCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTTGGAATGATGCAAG 2198
Query 986 TTTCTTCCTAGGCGAGGATAAGAAAGTCGTCATGTTCTGTGAGAAATTGATTGATGAGAA 1045
|||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2199 TTTCTTGCTAGGCAAGGAGAAGAAAGTCGTCATGTGCTGTGAGAAATTGATTGATGAGAA 2258
Query 1046 CAAGGTCAAAGACATGGTCTACATTGTTGGGGAGGATAATGTTGTCACAGAAGTGGGATT 1105
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 2259 CAAGGTCAAAGACATGGTCTACATTGTTGGGGTGGATAATGTAGTCACAGAAGTGGAATT 2318
Query 1106 TGGAGTAGATGAAATGGATGGATGTCGGGCAGTTATTCTTAATTATGTTCCAAGTTTGGT 1165
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2319 TGGAGTAGATGAAATGGATGGATGTCGGGCAGTTATTTTTAATTATGTTCCAAGTTTGAT 2378
Query 1166 TCAAATCGAGCGAGCTGGAGGCAACAGGAAAAGAGGGCACTAA 1208
||||||||||| |||||||||||||||||||||||| |||||
Sbjct 2379 TCAAATCGAGCAAGCTGGAGGCAACAGGAAAAGAGGTAACTAA 2421
Score = 296 bits (160), Expect = 3e-79
Identities = 197/214 (92%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 229 GGAATGATTACAGGATTTTTCCGATTAGCTTCAATCTCCATGGAAATAGTCCATCTCTAG 288
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1526 GGAATGACTACAGGATTTTTCCAATTAGCGTCAATCTCCATGGAAATAGTCCATCTCTAG 1585
Query 289 AGCTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAGCT-GCTCCATTCGAAATA 347
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1586 AGCTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAG-TAGCTCAATTCGAAATA 1644
Query 348 TCTCGAGTCATTCACTGTGAGGGATTGTTGTTGTGCTCCTCCCAAT-TGGACGAATCTAG 406
||||||||| |||||||||| || |||||||| ||||||||||| | | |||||||||||
Sbjct 1645 TCTCGAGTCCTTCACTGTGACGGCTTGTTGTTATGCTCCTCCCA-TGTCGACGAATCTAG 1703
Query 407 AGTCGTGGTTTGGAATCCTTTAACCGGTGA-AAC 439
|||| ||||||||||||||||||| | ||| |||
Sbjct 1704 AGTCTTGGTTTGGAATCCTTTAACTGATGACAAC 1737
> Ahg929832 jgi|Araly1|929832|scaffold_302289.1
Length=1182
Score = 494 bits (267), Expect = 9e-139
Identities = 898/1185 (76%), Gaps = 114/1185 (10%)
Strand=Plus/Plus
Query 61 AGCTTCCAAATGACTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC 120
|||||||||| | ||| ||||||||||||||||| ||| ||| | |||| ||| | ||
Sbjct 36 AGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACGACATATCTCAAAC 95
Query 121 GTTTACGATCGACTTGCAAAGCATGGAACCGTTTATTCAAAGGTGATCGGATATTAGCAA 180
| ||||| || |||||||||| |||||||||||||||||||| |||||||| ||| | ||
Sbjct 96 GATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGATCGGAGATTCGAAA 155
Query 181 GTAAGCATTTTGAAAAATCCGCAAAACAGT-T-TAGATCTC-TATCGTTAAGGAATG-AT 236
| ||||||||||| ||| ||||||| |||| | || |||| ||||| | || | |
Sbjct 156 GAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATCG---ACCAA-GTAC 211
Query 237 TAC-AGG-A--TT-TTTCCGATTAGCTTCAATCTCCATGGAAATAGT-CCATCTCTAGAG 290
|| ||| | || ||| ||| ||| ||||||||||||||| || | |||||| |||||
Sbjct 212 CACAAGGTACCTTGTTT--GATGAGCCTCAATCTCCATGGAATTA-TGCCATCTTTAGAG 268
Query 291 CTT--AA--AAG-TGA-GCTAATCGATCCTCATTCTAAGAATTCAGCT-G--CTCCATTC 341
|| || ||| | | || | ||||| | |||||||| || || | | || | |
Sbjct 269 GTTGAAAGTAAGATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAGTACTAAAATG 328
Query 342 G-AAATATCTCGAGTCATTCACTGTGAG-GGATTGTTGTTGTGCTCCTCCCAATTGGACG 399
| |||| ||||||||| ||||||||| | || |||||||| |||||||||||| ||||
Sbjct 329 GAAAAT-TCTCGAGTCTTTCACTGTG-GCGGCTTGTTGTTATGCTCCTCCCAAGACGACG 386
Query 400 AATCTAG-AGTCGTGGTTTGGAATCCTTTAACCGGTGAAACCAGGTGGATCAGAACCGGC 458
||||| | | || |||||||||| || ||||| ||||||| ||||||||||| ||||||
Sbjct 387 AATCT-GCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGATCAAAACCGG- 444
Query 459 G-ATTTTCGCCAAAAAGGCCGTAGCTTTGATGTCGGGTACTACTACCAAAAAGACAAGAG 517
| || |||| | ||||| || | ||||| | | || |||||||||||| ||||||| |
Sbjct 445 GAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGAAGACAA-AA 503
Query 518 ATCCTGGATCAAGAGCTACAAACTCTTGTGCTATTATCGTGGTACCAAAT-ATTTTGAAA 576
| || | |||||||| ||||| ||| |||| ||| | | ||| |||| ||||
Sbjct 504 AACC-----C---TGCTACAAAATCTTGAGCTTTTATAGTGACAGC-AATGATTTCGAAA 554
Query 577 TCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATTATCGCTCCACGGGGGA 636
||| ||| ||| ||||||||||||||||| || ||||||||| | | | |||| || |
Sbjct 555 TCTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATA-TCT-G-TCCA-GGCTG- 609
Query 637 GT-ATTG-GATA--CTCG-GAACTTAGCGTGTCTCTGAAAGGAAATACTTAC-TGGTTCG 690
|| ||| | | || | || | |||| ||| |||| ||||| || ||| | ||| |
Sbjct 610 GTCCTTGCCAAACCCTTGTCAA--T-GCGTATCTTTGAAGGGAAAAACATACAT-GTTTG 665
Query 691 CTAAAGGTGTAACAGAAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATT-TTTAT 749
|| || || |||| || | | | | |||| |||||||||| ||||| || |
Sbjct 666 CTTTAGATGAAACA-AA-AAC-G---TG---TGTATCCTTGCTCAAATATGATTATTCA- 715
Query 750 ACAGAGAAATCTGTACCTGTGCTTCTTCCCTATC-AGAGTCGTCGTCTTTTCCAAGCTAG 808
|||||||||||| ||| ||||| |||||| || | |||||||| | |||| ||| |
Sbjct 716 ACAGAGAAATCTATACTTGTGCCTCTTCCATA-CAAGAGTCGT--TGTTTT-GAAGAGAC 771
Query 809 TAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCTAGATCAAAGTTC 868
||| ||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||
Sbjct 772 TAGTCTTTCCGTTGTTAGAGAAGAGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTTG 831
Query 869 CAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCAAAG-GA--GCAGTTTC 925
|||||||||||||||||||||||| ||| || |||||||||| || | || ||
Sbjct 832 CAAGACTGAGATATGGGTGACAAA--TGA--GA--CCACCACCAAAGCGATGGTGGTGTC 885
Query 926 TTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTGGGAATGATGGAAG 985
|||| ||||||||| ||||||||||||||||||| |||| | ||| || ||||||||||
Sbjct 886 GTGGAGCAAGGTCTTGGCATTGGATTTGAGCCCTCTTCTTGAAATTTGGTATGATGGAAG 945
Query 986 TTTCTTCCTAG-GCGAGGATAAGAAAGTCGTCATG-TTCTGTGAGAAATTGATTGATG-A 1042
|||||| || | | ||||| ||||||||| ||||| || | | | | || ||| || | |
Sbjct 946 TTTCTTTCTTGAG-GAGGAGAAGAAAGTCATCATGATT-TCTAATAGATGGATAGAAGAA 1003
Query 1043 GAACAAGGT-CAAAGAC-ATGGTCTACATTGTTGGGGAGGA---TAATGTTGTCACAGAA 1097
| |||| | | ||||| || | ||||||||||||||||| |||| | |||| ||
Sbjct 1004 G-ACAA-ATCCGAAGACAAT-CTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAA 1060
Query 1098 GTGGGATTTGGAGTAGATGAAATGGATGGATGTCGG-GCAGTTATTCT-TAATTATGTTC 1155
|| | | | | | ||| ||||||||| || ||| | || | |||||||||||
Sbjct 1061 GT---A--T--A-T--A--CAATCGATGGATGT-GGATCAGCTGTT-TATAATTATGTTC 1106
Query 1156 CAAGTTTGGTTCAAATCGAGCGAGCTGGAGGCAACAGGAAAAGAG 1200
|||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1107 CAAGTTTGGTTCAAATCGAGCGAGCTCGAGGCAAGAGGAAAAGAG 1151
> Ahg318596 jgi|Araly1|318596|fgenesh1_pm.C_scaffold_3001612
Length=1119
Score = 401 bits (217), Expect = 5e-111
Identities = 881/1182 (75%), Gaps = 124/1182 (10%)
Strand=Plus/Plus
Query 61 AGCTTCCAAATGACTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC 120
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 14 AGCTTCCAAAGGATTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCCACATCTCTGAAAC 73
Query 121 GTTTACGATCGACTTGCAAA-GCATGGAACCGTTTATTCAAAGGTGATCGGATATTAGCA 179
| |||||||| ||||||||| | |||||||| ||||||||||| |||| || ||| |||
Sbjct 74 GATTACGATCCACTTGCAAAAG-ATGGAACCATTTATTCAAAGATGATAAGAGATTCGCA 132
Query 180 AGTAAGCATTTTGAAAAATCCGCAAAACAGT-T-TAGATCTCTATCGTTAAGGAATGATT 237
|| ||||| ||| ||| ||||||| |||| | || |||| || ||| | || || |
Sbjct 133 AGAAAGCACACTGACAAAGCCGCAAAGCAGTATCTACCTCTC-AT-GTTGACCAAGGACT 190
Query 238 ACAGGATTTTTCCGATTAGCTTCAATC-TCCATGGAAATAGTCCATCTCTAGAGCTTAAA 296
||||||||| ||| || | || | || | | || ||||||||||||| |||||
Sbjct 191 ACAGGATTTGTCCTAT-A-----AA-CGTC-A---A--TACTCCATCTCTAGAGGTTAAA 237
Query 297 AGTGAGCTAATCGATCCTC-ATTCTAAGAATTCAGCTGCTCCATTCGAA-ATATCTCGAG 354
| |||||| | | | ||| || || | |||||| |||| |||| || ||| |||||
Sbjct 238 AATGAGCTTAGCT-TACTCGATCCTCA---TTCAGCAGCTCAATTC-AACATAGATCGAG 292
Query 355 TCATTCACTGTGAGGGATTGTTGTTGTGCTCCTCCCAATTGGACGAATCTAGAGTCGTGG 414
|| |||||||||| || |||||||| ||| | |||||| | ||||| ||| ||||||
Sbjct 293 TCTTTCACTGTGATGGCTTGTTGTTATGCACATCCCAAAA--A-GAATCAAGATTCGTGG 349
Query 415 TTTGGAATCCTTTAACCGGTGAAACCAGGTGGATCAGAAC-CGGCGATT-TTCGCCAAA- 471
||||||| |||||||| |||| ||||| ||||||| |||| ||||||| || | ||
Sbjct 350 TTTGGAACCCTTTAACTGGTGTAACCAAGTGGATC-GAACTCGGCGATCGTTA-C-AACG 406
Query 472 AAGGCCGTAGCTTT-GATGTCGGGTACTACTACCAAAAAGACAAGAGATCCTGGA-TCAA 529
|||| | ||||| | | | || || | || || |||| ||||| | | ||
Sbjct 407 AAGGTA-TGGCTTTTGTTCTTGGATA-TG--AC-AA-----CAAG---TCCTGTAAT-AA 452
Query 530 GAGCTACAAACTCTTGTGCTATTA-TCGTGGTACCAAATATTTTGAAATCTACGATTTT- 587
|||||||||| ||||| ||| ||| | | ||| ||| ||| |||||||||||| |||
Sbjct 453 GAGCTACAAAATCTTGAGCT-TTAATTTTTGTAACAAGGATTCTGAAATCTACGAGTTTA 511
Query 588 GACTCTGATTCATGGAGGATTCTTGATGATATTATCGCTCCACGGGGGAGTA-TTGGA-T 645
| |||||| ||||||||| || |||||||||| | || | ||| | || ||||| |
Sbjct 512 G-CTCTGACTCATGGAGGGTTATTGATGATATCAA-GC-C-ACGCC--ACTACTTGGAAT 565
Query 646 ACTCG-GAACTTAGCGTGTCTCTGAAAGGAAATACTTACTGGTTCGCTAAAGGT-GTA-A 702
|||| ||| | | |||||| |||| ||||| ||||||||||| | || || | | | |
Sbjct 566 ACTCTAGAAAGT-GTGTGTCTTTGAAGGGAAACACTTACTGGTTTGGTATAGATAGAAGA 624
Query 703 CAGAAG---A-GCGGCCCCGCACCATATCATTGCTCAAATTTGATTTTT-ATACAGAGAA 757
| |||| | | || ||| | ||| | |||||||||||||||||| | ||||||||
Sbjct 625 C-GAAGTCTATG-GGACCCT-AGCATGGCCTTGCTCAAATTTGATTTTGGA-ACAGAGAA 680
Query 758 ATCTG--TA----CCTGTGCTTCTTCCCTATCAGAGT-CGTCGTCTTTTCCAAGCTAGTA 810
|| || || ||| ||| || ||| | ||| ||| | | || ||| | ||| ||
Sbjct 681 ATTTGGGTATGTTCCTCTGCCTCGTCCATGTCA-AGTGCATGGT-TTTG--AGGCTTCTA 736
Query 811 GCCTTTCTGTTGTTAGAGAAGATAAA-CTTTCTGTGTTATT-GCAGCTA-GAT-CAA-AG 865
||||| ||||| ||||| || ||| ||||| |||||||| | || | | | | | |
Sbjct 737 ATCTTTCCGTTGTCAGAGACGA-AAAGCTTTCGGTGTTATTAG-AGG-ACGGTTCTACA- 792
Query 866 TTCCAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCAAAGGAGCAGTTTC 925
| ||||||||||| |||||||||||||| ||||| ||||| || || | | || ||
Sbjct 793 T-CCAAGACTGAGGTATGGGTGACAAATAAGATTGGTGAGA--AC-AATGT-G--GTGTC 845
Query 926 TTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTGGGAATGATGGAAG 985
|||| |||||||||||||||| || ||| || || || |||| | || | |||
Sbjct 846 GTGGAGCAAGGTCTTAGCATTGTATCCGAGAGCTGAT-TT----TTGGCA-TGGCGCAAG 899
Query 986 TTTCTTCCTAGGCGAGGATAAGAAAGTCGTCATGT-TCTGTGAGA--AATTGATTGATGA 1042
|| ||| |||| |||||| |||||||||||| ||| | ||| ||| || ||| ||||
Sbjct 900 TTGCTTGCTAGACGAGGAGAAGAAAGTCGTCCTGTGT-TGTAAGAGTAAGAGATGGATG- 957
Query 1043 GAACAAGGTCAAAGACATGGTCTACATTGTTGGGGAGGATAATGTTGTCACAG-AAGTGG 1101
|| |||| | |||| ||| ||||||||||| ||||||||| |||| | || |||
Sbjct 958 GAGGAAGG--A--GACAAGGTATACATTGTTGGAGAGGATAATAAAGTCAAAATAA-TGG 1012
Query 1102 GATT-TGGAGTAGATGA-AATGGATGGATGTCGGGCAGTTATTCTTAATTATGTTCCAAG 1159
||| |||||| || | ||| || |||| | | || ||||||||||||| |||||||
Sbjct 1013 -ATTCTGGAGTTTAT-ACAATTGAAGGATCTTGTCCAACTATTCTTAATTATATTCCAAG 1070
Query 1160 TTTGGTTCAAATCGAGCGAGCTGGAGGCAACAGGAAAAGAGG 1201
|||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1071 TTTGGTTCAAATCGAGAGAGCTGGAGGCAAAAGAAAAAGAGG 1112
> Ahg952175 jgi|Araly1|952175|scaffold_43900002.1
Length=1157
Score = 172 bits (93), Expect = 5e-42
Identities = 626/870 (72%), Gaps = 89/870 (10%)
Strand=Plus/Plus
Query 409 TCGTGGTTTGGAATCC-TTTAACCGGTGAAACCAGGTGGATCAGAA-CCGGCGAT-TTTC 465
|||| |||||||| || ||| || ||| | |||||||||||| ||| ||||| || ||
Sbjct 319 TCGTTGTTTGGAACCCGTTT-ACTGGTCAGACCAGGTGGATC-GAATCCGGCAATCGTT- 375
Query 466 GCCAA-AAAGGCCGTAGCTTTGATGTCGGGTACTACTACCAA-A-AAG-ACAAGAGATCC 521
| ||| ||||| | |||| | | || |||||||||||| | ||| || | || |||
Sbjct 376 G-CAAGGAAGGCAAAATATTTGTTCTAGGATACTACTACCAAGACAAGAAC-A-AG-TCC 431
Query 522 TGGA-TCAAGAGCTACAAACTCTTGTGCTATTA-TCGTGGTACCAAAT-ATTTTGAAATC 578
|| | | || ||||||||| | ||||||| | | || | | | ||| || ||||||
Sbjct 432 TGCAGT-AAAAGCTACAAAGTTTTGTGCT-TGAGTCCTTTTGGC-AATGATACAGAAATC 488
Query 579 TACGATTTTGACTCTGATTCAT---GGAGGATTCTTGATGATATTATCGCTCCACGGGGG 635
||||| || |||||||||| | ||||||||| ||||| | | ||| ||
Sbjct 489 TACGAGTTAAACTCTGATTCGTGGAGGAGGATTCCTGATGGT-CCA-GGCT--AC----T 540
Query 636 AGTATTGGATACTC-GGAACTTA-GCGTGTCTCTGAAAGGAAATACTTACTGGTTCGCTA 693
| ||| | |||| || | || | |||||| |||| ||||||||||||||||| |||
Sbjct 541 A-CATTTCAGACTCTGG-CCATATG-GTGTCTTTGAAGGGAAATACTTACTGGTTTGCT- 596
Query 694 AAGGTGTA-ACAG-AAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATTTTTATAC 751
||| | | || || | | || | | |||||| |||||| |||||||||| | ||
Sbjct 597 --CGTG-AGATAGCAA-AACCGCATCTCGGCATATCCTTGCTCGGATTTGATTTTCAGAC 652
Query 752 AGAG-AA--ATC-TGTACCTG--TGCTTCTTCCCTATCAGAGTCGTCGTCTTTTCCAAGC 805
|||| || ||| | | || ||| ||||||||||||| ||| | || | | ||
Sbjct 653 AGAGAAATCATCATCTTTTTGTTTGCCTCTTCCCTATCAGGGTCCAC-TC-TATGAAATT 710
Query 806 TAGTAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTG-TTATTGCAGCTAGATCAAA 864
| | || ||||| || ||||||||||| |||||||| ||| ||| | || | | | | |
Sbjct 711 TTG-AGTCTTTCCGTCGTTAGAGAAGAGAAACTTTCCGTGTTTA-TACAACCCGTTTATA 768
Query 865 GTTCCAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCA--AA-GGAGCAG 921
||||||||||||||||||||||| | | ||||||||| ||||||| || |||||||
Sbjct 769 CATCCAAGACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAG 828
Query 922 TTTCTTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTT-CAGAT-TGGGAATGA 979
|||||||||||||||||||| ||||||| || | || | ||| | ||| |
Sbjct 829 TTTCTTGGACCAAGGTCTTATCATTGGAAAAGAAAAGAAAAATTACGGATCTTCAAATCA 888
Query 980 TGGAAGTT--TCTTCC--T-A-GG--CGAGGATAAGAAAGTCGTCATGT-TCTGTGAGAA 1030
||| | ||||| | | || | |||| |||||| ||||| ||| | || ||||
Sbjct 889 AGGACCCTGATCTTCAAATTACGGATC-AGGAAAAGAAAATCGTCCTGTGT-TGCGAGAG 946
Query 1031 ATTGATTG--ATG-A-GA--A--C-AAGGTCAAA-GACATGGTCTACATTGTTGGGGAGG 1080
|| ||| | ||| | || | | ||| || | |||| | | |||||| | |||||||
Sbjct 947 ATGGATGGTCATGGAAGACGAGACCAAG-TCCATCGACAAGATATACATTCTCGGGGAGG 1005
Query 1081 ATAATGTTGTCACAGAAGTGGGATTTGGAGTAGATGA-AA-TGGATGGATGTCGGGCAGT 1138
||||| |||| |||||| | ||||| || | | | || || | |||||| || |||
Sbjct 1006 ATAATAAAGTCATTGAAGTGAGTTTTGGTGTGGGT-ATAACTGAA-GGATGTTGGCCAGC 1063
Query 1139 TATTCTTAATTATGTTCCAAGTTTGGTTCAAATCGAGCGAGCTGGAGGCAACAGGAAAAG 1198
|||||||||||||||||||||||||| || | | |||| |||||| ||||| || |||||
Sbjct 1064 TATTCTTAATTATGTTCCAAGTTTGGCTCGAGTTGAGCCAGCTGGGGGCAAAAGAAAAAG 1123
Query 1199 AGG-GCACTAAACA-CTGTCTACATGTAAT 1226
||| | |||||||| | ||||||||||||
Sbjct 1124 AGGTG-ACTAAACAACC-TCTACATGTAAT 1151
> Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611
Length=1002
Score = 121 bits (65), Expect = 2e-26
Identities = 80/87 (92%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 75 TTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGACGTTTACGATCGACT 134
||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 25 TTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGATTACGATCTACT 84
Query 135 TGCAAAGC-ATGGAACCGTTTATTCAA 160
||||| || ||||||| ||||||||||
Sbjct 85 TGCAA-GCGATGGAACAGTTTATTCAA 110
> Ahg933278 jgi|Araly1|933278|scaffold_401266.1
Length=1114
Score = 91.6 bits (49), Expect = 1e-17
Identities = 112/141 (79%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 75 TTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC-GTTTACGATCGAC 133
||||||||||||||||||||||||||||| ||| ||| |||| || | ||||||| ||
Sbjct 42 TTGGTAGAGGAGATACTCTGTCGCGTTCCAACAATATCGCTGA-ACCGATTACGATATAC 100
Query 134 TTGCAAA-GCATGGAACCGTTTATTCAAAGGTGATCGGATATT-AGCAAGTAAGCATTTT 191
|| ||| | ||||||| | |||||||| | ||| ||| | |||| ||||||||
Sbjct 101 ATGTAAACG-ATGGAACAGATTATTCAACCAA-A--GGAGATTCA-CAAGAAAGCATTTA 155
Query 192 GAAAAATCCGCAAAACAGTTT 212
|| ||| ||||||||||||||
Sbjct 156 GACAAAGCCGCAAAACAGTTT 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5