BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18930.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479408 jgi|Araly1|479408|fgenesh2_kg.3__2109__AT3G18930.1 2333 0.0
> Ahg479408 jgi|Araly1|479408|fgenesh2_kg.3__2109__AT3G18930.1
Length=1814
Score = 2333 bits (1263), Expect = 0.0
Identities = 1619/1775 (91%), Gaps = 87/1775 (5%)
Strand=Plus/Plus
Query 23 TGTAAATTTT-ATTTATCCCAATACCGTTTACCTTTAGTCAACG--AtttttttCCCACC 79
||| |||||| |||| |||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1 TGTTAATTTTAATTT-TCCCAATACCGTTTACCTTTAGTCAACGCTTTTTTTTTTCCACC 59
Query 80 AAAGTCCCCAAATACAC---T-CGTTT-GCGTTTAAACCTTTCACTTGAAACTCtgtttt 134
||||||||||||||||| | ||||| |||||||||||||||| ||| ||||||||
Sbjct 60 AAAGTCCCCAAATACACATTTACGTTTAAAGTTTAAACCTTTCACTGGAACCTCTGTTTC 119
Query 135 agactcttttatttgttagacttttttgtttgtttcgtcgttgttgttttttgACCAAAC 194
|||||| || || | |||| | | | | |||||| |||||||
Sbjct 120 AGACTC------TT-TT---C---TTTG--T-TAT--AC-------TTTTTT-ACCAAAC 153
Query 195 CACCATGCGATTCGTCGCGCCACCGCCTCGTTCCGGCGATAACTCACCGTCACCTTCACC 254
||||||||||| ||||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct 154 TACCATGCGATTTGTCGCCCCACCGCCTCGTTCCGGCGATATCTCACCATCTCCTTCACC 213
Query 255 ATCTTCCGGTATATCCGAAGAGATTCTCTCCCGTTCTTCGGATCCTCCTTTAGAGTTTAG 314
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 214 ATCTTCCGGTGTATCTGAAGAGATTCTCTCCCGCTCTTCAGATCCTCCTTTGGAGTTTAG 273
Query 315 TCCTCCATTGATCGCCATGGTGGTGGTTCTAGCCGCCGCTTTTCTATTCGTAACTTACTC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TCCTCCATTGATCGCCATGGTGGTGGTTCTAGCCGCCGCTTTTCTATTCGTAACTTACTC 333
Query 375 TCGTCTCATCTCCCGCCGTTTTCTTTCACCTCTATTCCGTCGTTTTAGAAGGTGGCGATG 434
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 334 TCGTCTCATCTCCCGCCGTTTTCTTTCACCTCTATTCCGTCGTTTTAGACGGTGGCGATG 393
Query 435 CCGTCGACGCCGTCTCCTTCACTTATCTTCAGCTTCCTCTGCTTCAACTTCATCCTCCGA 494
||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 394 CCGACGGCGCCGTCTCCTTCACCTATCTTCAGCTTCCTCTGCTTCAACATCATCCTCTGA 453
Query 495 TCTCCGATCATTTTCACCTTTCCCTTTCGACTCTTTTCATTACTCTTCTTACTCACCTTA 554
||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 454 TCTCCGATCCTTTTCCCCTTTCCCTTTCGACTCTTTTCATTACACTTCTTACTCACCTTA 513
Query 555 CGGATTAGACGATTCCGTTATCAAAACTTTACCGCTGTTTCTCTACTCCGCCGCTGCTTG 614
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 514 CGGATTAGATGATTCCGTTATCAAAACACTACCGTTGTTTCTCTACTCCGCCGCCGCTTG 573
Query 615 CACC-GGAAAACCCGCGGTGGGGAAAACCTCCGCCGCCAATTGCAGAGATTGTGCTGTTT 673
|||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 574 CACCGGGAAAA-CCGCGGTGGGGAAAACCTCCGCCGCAAATTGCAGAGATTGCGCTGTTT 632
Query 674 GTTTGTTGGAATTCGAAGAAGGTGATTATGTACGAACACTTCCGTTATGCTTCCATGCTT 733
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 633 GTTTGTTGGAATTCGAAGAAGGTGATTATGTACGAACACTACCTTTATGCTTCCATGCTT 692
Query 734 TTCACCTTGAATGCATCGATGAATGGCTCCGATCTCACCCTAACTGTCCGTTATGCCGTA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TTCACCTTGAATGCATCGATGAATGGCTCCGATCTCACCCTAACTGTCCGTTATGCCGTA 752
Query 794 CGGCGATTCTCGGAT----C-C-GCCGGAGTTTTAACGCCTATGTCGCCGTTCGTTCCGT 847
||||||||||||||| | | |||||||||||||| |||||||| |||||||||||||
Sbjct 753 CGGCGATTCTCGGATCCGCCGCTGCCGGAGTTTTAACACCTATGTCTCCGTTCGTTCCGT 812
Query 848 TAATGGCTCCTCGAATTCGTCCGAGTCTCGATGATGA---AGAGAATAACGCGATCATCA 904
||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 813 TAATGGCTCCTCGAATTCGTCCGAGCCTCGATGATGATGCTGAGACTAACGCGATCATCA 872
Query 905 TCCGCGGCGAAATCACACCGTCGCGGAGCAATTGGAACACAAT--C-GCTGC--CGAT-A 958
|||||||||||||||||||||||||||||| |||||||||| | | ||||| || | |
Sbjct 873 TCCGCGGCGAAATCACACCGTCGCGGAGCAGTTGGAACACAGTCGCTGCTGCGGCGGTGA 932
Query 959 CGACGAACGATCAGGAGATCAGAGCGTCGGTGGAAGAGCAATCATCACCGGCGATTTCTC 1018
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 933 CGACGAACGATCAGGAGATCACAGCGTCGGTGGAAGAGCAATCATCACCGGCGATTTCTC 992
Query 1019 GGTTCCGGGAGCTGAAGAGATCGTACTCGTTCGAATGCGAGAGAGAATCTGAATCAGAGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 GGTTCCGGGAGCTGAAGAGATCGTACTCGTTCGAATGCGAGAGAGAATCTGAATCAGAGA 1052
Query 1079 GAGTAACGATGGAGCCAGCGACGGTGTCTCCATGGAGATACCGGAGATCTACATGGAACA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GAGTAACGATGGAGCCAGCGACGGTGTCTCCATGGAGATACCGGAGATCTACATGGAACA 1112
Query 1139 AACGTCAATCACCGTTCGGAAACCTAATATCGAAATCAAGAGTGTTCTCGTTCCGTTACT 1198
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1113 AACGTCAATCACCGTTCGGAAACCTAATTTCGAAATCAAGAGTGTTCTCGTTCCGTTACT 1172
Query 1199 ACAGAAGCACGAAATCACCGTTCTTCCGACGGAGATCATCGGCGGGAGTGTTTTACCCGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 ACAGAAGCACGAAATCACCGTTCTTCCGACGGAGATCATCGGCGGGAGTGTTTTACCCGA 1232
Query 1259 TATCAGAACGGATTCCAGCGACGGGAAGCTCATCGCGGCGAACGAAATCGATGACGAGTC 1318
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1233 TATCGGAACGGATTCCAGCGACGGGAAGCTCATCACGGCGGACGAAATCGATGACGAGTC 1292
Query 1319 CGATGTTCTTCAGAACAGCACCGCACTCATCGAGCCGGTTAAGATGCGGAGATCCAGAGG 1378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1293 CGATGTTCTTCAGAACAGCACCACACTCATCGAGCCGGTTAAGATGCGGAGATCCAGAGG 1352
Query 1379 CACTGTTATCGCCGGAGAGATGGAGAAGAAGAGACACGTGTAGGGCAGAGATGTAAGATG 1438
||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1353 CACTGTTGTCGCCGGAGAGATGGAGAAGAAGGGACACGTGTAGGGTGGAGATGTAAGATA 1412
Query 1439 AAATTTGGACGGTGGTGATGATAAAAAGAAATATTGAAGTGGAAGGAGAGAGCATTAATG 1498
||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||
Sbjct 1413 AAATTTGGACGGTGGTGATGATAAAAA-AA-T-T-GAAGTGGAAGGAGAGAGCATTAATG 1468
Query 1499 GAATGTGGGGTTTAAGCATTTAATGGAATTAAAATGAACGAAACAGAAGAAGATAGAGAG 1558
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1469 GAATGTGGGGTTTAAGCATTTAATGGAATTAAAATGAACGAAACAGA-GAAGATAGAGAG 1527
Query 1559 ATTCAGAAATTGCTCAGCTGCTCACATTC-A-CAACAAGACAAAAGACGCCAAGACGATG 1616
||||||||||||||||||||||||||| | | | || ||| | ||||||||||||||||
Sbjct 1528 ATTCAGAAATTGCTCAGCTGCTCACATACTATCT-CA-GACCAGAGACGCCAAGACGATG 1585
Query 1617 AAGGTTTTGGAGCCTGTACGACGGCGTTTTGGCTGATGATTCGTTTTTTCCTCTCTTTGG 1676
|||||||||||||||||||| |||||||||| || || |||
Sbjct 1586 AAGGTTTTGGAGCCTGTACGGTGGCGTTTTGGTTG--GA---GTT--------------- 1625
Query 1677 AGTTATCAAAATGCATT-AACTTCAAAAGCTGCCAAAGTTATCATAGAAACGAAAGTCAA 1735
| | ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1626 A-T---CAAAATGCATTTAACTTCCAAAGCTGCCAAAGTTATTATAGAAACGAAAGTCAA 1681
Query 1736 CAA-CACATTGAATTTCGTTTCTATAATAACTTTA 1769
||| | |||| ||||||||||||||||||||||||
Sbjct 1682 CAAACCCATTAAATTTCGTTTCTATAATAACTTTA 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5