BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18940.1 Length=1068 Score E Sequences producing significant alignments: (Bits) Value Ahg479410 jgi|Araly1|479410|fgenesh2_kg.3__2111__AT3G18940.1 1622 0.0 Ahg929716 jgi|Araly1|929716|scaffold_302173.1 219 5e-56 > Ahg479410 jgi|Araly1|479410|fgenesh2_kg.3__2111__AT3G18940.1 Length=1007 Score = 1622 bits (878), Expect = 0.0 Identities = 966/1009 (96%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 51 TTTGGGAAACTTGCAATCCGATTCTGTCACCAGTGTTTTGCCTTCATAAATGGAGTTTGT 110 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 TTTGAGAAACTTGCAATCCGATTCTGTGACCAGTGTTTTGCCTTCATAAATGGAGTTTGT 60 Query 111 TGTTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCAGCATTGTC 170 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TGCTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCTGCATTGTC 120 Query 171 AATTGGGAATGTAGGACAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAG 230 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATTGGGAATGTGGGGCAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAG 180 Query 231 AGTTGGTTATCTTGATGATCCAAATCTGCTTCCTTGTGTTGGAAATGATGCTTATGGCCC 290 |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 181 AGTTGGTTATCTCGATGATCCATATCTGCTTCCTTGTGTTGGAAATGACGCTTATGGCCC 240 Query 291 TCTTCCTTGTGGCGAGATCGCCCTTCCTCTCGAGGTTTATGAGTCATCTTCAATTGCTAC 350 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 TCTTCCTTGTGGCGATATCGCCCTTCCTCTTGAGGTTTATGAGTCATCTTCAATTGCTAC 300 Query 351 TACCCTTGCTCAGCAACGGTCTCCAGTTGCAAAGGGAATGATGATTAAATTTGCGGAGAA 410 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 TACTCTTGCTCAGCAACGGTCTCCAGTTGCGAAGGGAATGATGATTAAATTTGCGGAGAA 360 Query 411 TATAGCCAATTTTGCTGCTTCAAGTGGAAAGAAGCACATCATTGTGTTATCGAGTTTAGA 470 ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 361 TATAGCCGATTTTGCTGCTTCAAGTGGAAAGAAGCATGTTATTGTGTTATCGAGTTTAGA 420 Query 471 CTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAA 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAA 480 Query 531 CGCTGAATCTGATGGAAGAGATGATCACTGTGAAAGGCTTGGGTTTGGAAGATTGCACGA 590 ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 481 CGCCGAATCTGGTGGAAGAGATGATCACTGTGAAAGGCTTGGATTTGGAAGATTGCGCGA 540 Query 591 GTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAAAAGAACAGTGT 650 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 541 GTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAGAAGAACAGTGA 600 Query 651 AGAAGAGCTGGCGTTGCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTT 710 |||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGAAGAGCTGACTTTCCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTT 660 Query 711 GCCATTTGCAGCTCTTTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGATGACATGCCTGCT 770 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 661 GCCATTTGCAGCTCTGTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGGTGACATGCCTGCT 720 Query 771 ATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTTCATC 830 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 721 ATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTGCATC 780 Query 831 TAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGGGAAATGGCAGAT 890 |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct 781 TAAGCTTACGGGTCTGACTCCTGATAAGTTCCACGGGGAAGAAGGTGGGAAATGGCGGAT 840 Query 891 ACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCGGATATGTCTATGTTTTAAGACTG 950 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 841 ACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCAGATATGTCCATGTTTTAGGACTG 900 Query 951 TTGTTGGAGCTCACAG-TGTCAGACACCGAGGTTGTTGTAGTGGTACA-ATTATGATCCA 1008 |||||||||||||||| | ||||||||||||||||||||||| ||| | ||||||||||| Sbjct 901 TTGTTGGAGCTCACAGAT-TCAGACACCGAGGTTGTTGTAGTAGTA-AGATTATGATCCA 958 Query 1009 ATGAGAAGTTTATGAACATTTGAGATGGTTTAATCCGATAGAGACACCT 1057 |||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 959 ATGAGAAGTTTATGAACATTTGAGATGGTTTAATTCGATAGAGACCCCT 1007 > Ahg929716 jgi|Araly1|929716|scaffold_302173.1 Length=259 Score = 219 bits (118), Expect = 5e-56 Identities = 183/211 (87%), Gaps = 18/211 (9%) Strand=Plus/Plus Query 760 ACATGCCTGCTATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCT 819 |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 60 ACATGCCTGCTATGTTACTGTTCTGAAGGAGATAACATTTCTGAAGCATTTCTTCTAGCG 119 Query 820 GAGGCT-TCATCTAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGG 878 |||||| | ||||||||||| ||| || | | ||||||||||||||||||||| Sbjct 120 GAGGCTGT-ATCTAAGCTTACGGG----AC-----A-A-GTTCCATGGGGAAGAAGGTGG 167 Query 879 GAAATGGCAGATACCGTATTCATGGAAGAGTATGTA-TG---G-AGCTCCTCCGGATATG 933 ||||||| |||||||||||| |||||||||||||| || | |||||||||||||||| Sbjct 168 AAAATGGCTGATACCGTATTCGTGGAAGAGTATGTAATGTATGGAGCTCCTCCGGATATG 227 Query 934 TCTATGTTTTAAGACTGTTGTTGGAGCTCAC 964 || |||||||||||||||| ||||| ||||| Sbjct 228 TCCATGTTTTAAGACTGTTATTGGAACTCAC 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39762202431 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5