BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18940.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479410 jgi|Araly1|479410|fgenesh2_kg.3__2111__AT3G18940.1 1622 0.0
Ahg929716 jgi|Araly1|929716|scaffold_302173.1 219 5e-56
> Ahg479410 jgi|Araly1|479410|fgenesh2_kg.3__2111__AT3G18940.1
Length=1007
Score = 1622 bits (878), Expect = 0.0
Identities = 966/1009 (96%), Gaps = 4/1009 (0%)
Strand=Plus/Plus
Query 51 TTTGGGAAACTTGCAATCCGATTCTGTCACCAGTGTTTTGCCTTCATAAATGGAGTTTGT 110
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTTGAGAAACTTGCAATCCGATTCTGTGACCAGTGTTTTGCCTTCATAAATGGAGTTTGT 60
Query 111 TGTTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCAGCATTGTC 170
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TGCTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCTGCATTGTC 120
Query 171 AATTGGGAATGTAGGACAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAG 230
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTGGGAATGTGGGGCAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAG 180
Query 231 AGTTGGTTATCTTGATGATCCAAATCTGCTTCCTTGTGTTGGAAATGATGCTTATGGCCC 290
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 181 AGTTGGTTATCTCGATGATCCATATCTGCTTCCTTGTGTTGGAAATGACGCTTATGGCCC 240
Query 291 TCTTCCTTGTGGCGAGATCGCCCTTCCTCTCGAGGTTTATGAGTCATCTTCAATTGCTAC 350
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCTTCCTTGTGGCGATATCGCCCTTCCTCTTGAGGTTTATGAGTCATCTTCAATTGCTAC 300
Query 351 TACCCTTGCTCAGCAACGGTCTCCAGTTGCAAAGGGAATGATGATTAAATTTGCGGAGAA 410
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TACTCTTGCTCAGCAACGGTCTCCAGTTGCGAAGGGAATGATGATTAAATTTGCGGAGAA 360
Query 411 TATAGCCAATTTTGCTGCTTCAAGTGGAAAGAAGCACATCATTGTGTTATCGAGTTTAGA 470
||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 361 TATAGCCGATTTTGCTGCTTCAAGTGGAAAGAAGCATGTTATTGTGTTATCGAGTTTAGA 420
Query 471 CTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAA 480
Query 531 CGCTGAATCTGATGGAAGAGATGATCACTGTGAAAGGCTTGGGTTTGGAAGATTGCACGA 590
||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 481 CGCCGAATCTGGTGGAAGAGATGATCACTGTGAAAGGCTTGGATTTGGAAGATTGCGCGA 540
Query 591 GTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAAAAGAACAGTGT 650
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAGAAGAACAGTGA 600
Query 651 AGAAGAGCTGGCGTTGCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTT 710
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAAGAGCTGACTTTCCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTT 660
Query 711 GCCATTTGCAGCTCTTTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGATGACATGCCTGCT 770
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 GCCATTTGCAGCTCTGTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGGTGACATGCCTGCT 720
Query 771 ATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTTCATC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 ATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTGCATC 780
Query 831 TAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGGGAAATGGCAGAT 890
|||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 781 TAAGCTTACGGGTCTGACTCCTGATAAGTTCCACGGGGAAGAAGGTGGGAAATGGCGGAT 840
Query 891 ACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCGGATATGTCTATGTTTTAAGACTG 950
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 841 ACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCAGATATGTCCATGTTTTAGGACTG 900
Query 951 TTGTTGGAGCTCACAG-TGTCAGACACCGAGGTTGTTGTAGTGGTACA-ATTATGATCCA 1008
|||||||||||||||| | ||||||||||||||||||||||| ||| | |||||||||||
Sbjct 901 TTGTTGGAGCTCACAGAT-TCAGACACCGAGGTTGTTGTAGTAGTA-AGATTATGATCCA 958
Query 1009 ATGAGAAGTTTATGAACATTTGAGATGGTTTAATCCGATAGAGACACCT 1057
|||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 959 ATGAGAAGTTTATGAACATTTGAGATGGTTTAATTCGATAGAGACCCCT 1007
> Ahg929716 jgi|Araly1|929716|scaffold_302173.1
Length=259
Score = 219 bits (118), Expect = 5e-56
Identities = 183/211 (87%), Gaps = 18/211 (9%)
Strand=Plus/Plus
Query 760 ACATGCCTGCTATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCT 819
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 60 ACATGCCTGCTATGTTACTGTTCTGAAGGAGATAACATTTCTGAAGCATTTCTTCTAGCG 119
Query 820 GAGGCT-TCATCTAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGG 878
|||||| | ||||||||||| ||| || | | |||||||||||||||||||||
Sbjct 120 GAGGCTGT-ATCTAAGCTTACGGG----AC-----A-A-GTTCCATGGGGAAGAAGGTGG 167
Query 879 GAAATGGCAGATACCGTATTCATGGAAGAGTATGTA-TG---G-AGCTCCTCCGGATATG 933
||||||| |||||||||||| |||||||||||||| || | ||||||||||||||||
Sbjct 168 AAAATGGCTGATACCGTATTCGTGGAAGAGTATGTAATGTATGGAGCTCCTCCGGATATG 227
Query 934 TCTATGTTTTAAGACTGTTGTTGGAGCTCAC 964
|| |||||||||||||||| ||||| |||||
Sbjct 228 TCCATGTTTTAAGACTGTTATTGGAACTCAC 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5