BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18970.1
Length=2024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479414 jgi|Araly1|479414|fgenesh2_kg.3__2115__AT3G18970.1 2785 0.0
Ahg318888 jgi|Araly1|318888|fgenesh1_pm.C_scaffold_3001904 69.4 9e-11
> Ahg479414 jgi|Araly1|479414|fgenesh2_kg.3__2115__AT3G18970.1
Length=1986
Score = 2785 bits (1508), Expect = 0.0
Identities = 1861/2024 (92%), Gaps = 54/2024 (3%)
Strand=Plus/Plus
Query 8 ATTGCGTCAGTGTCTCGTTTTTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGT 67
||||||||||||||||| ||| | ||||||||||||||| |||| |||||||||||||||
Sbjct 4 ATTGCGTCAGTGTCTCG-TTTCT-TCTCGGGTTTACTTTATGTTTTCGATGTGGATAAGT 61
Query 68 TGTTTTTACCTCA-T-TATATATAACCTCTTGAGTGGAACTCAAATTGTTTGAGTAGAAC 125
|||||| ||| || | |||||| |||||| ||||||||||||| ||||||||||||
Sbjct 62 TGTTTTCACCCCATTCTATATAGAACCTC-GGAGTGGAACTCAATTTGTTTGAGTAG--- 117
Query 126 AAACAAAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATCAAATTTGGTAC 185
||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 118 -AAC-AAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATC-AA------A- 167
Query 186 TTGTAGCCATGATGATGATTATGATGAAGATGGGTTTGTGCTGTAGATTCTTCGATATTT 245
| | | | | | | ||||||||||||||||||||| |||||| ||| | |||
Sbjct 168 -T-T----A-G--G-T-A-TATGATGAAGATGGGTTTGTGTTGTAGA---TTC--T-TTT 209
Query 246 ATTTTATCTCTTAGCTTTTGTTTCTCCTTCTCTTTGCCTTAATCCATTACAGTATCAGAG 305
||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 210 -CTTTATGTCTTAGCGTTTGCTTCTCCTTCTCTTTGCCTTAATCCATTACAGTATCAGAG 268
Query 306 TTTGGTGCTTATGAGCTCTGTTTTTCCAGGACCAAGATTTTTGTCCTTGTTGCAACAGAA 365
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 269 TTTGGTGCTTATGAGCTCTGTTTTTCCAGGACCAAGATTTTTGTCCTTGTTGTATCAGAA 328
Query 366 TTCGAAAACCCTAATTCAAGCTAAGCAAATCCATGCTCAATTAGTCATCAATGGCTGCCA 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 329 TTCGAAAACCCTAATTCAAGCTAAGCAAATCCATGCTCAATTAGTCATCAATGGTTGCCA 388
Query 426 TGATAATTCTCTATTTGGCAAACTCATAGGCCATTACTGTTCAAAGCCATCAACCGAAAG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 389 AGATAATTCTCTATTTGGCAAACTCATAGGCCATTACTGTTCAAAGCCATCAACAGAAAG 448
Query 486 CAGCTCAAAGCTTGCTCATTTACTAGTGTTTCCTCGATTTGGTCATCCTGATAAGTTTCT 545
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 449 C---TCAAAGCTTGCTCATTTACTGGTGTTTCCTCGATTTGGTCATCCTGATAAGTTTCT 505
Query 546 CTTCAACACATTGCTTAAATGTAGCAAACCAGAGGACTCGATTCGGATTTTTGCCAATTA 605
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 506 CTTCAACACATTGCTTAAATGTAGCAAACCAGAGGACTCGATTCGGATTTTCGCCAATTG 565
Query 606 TGCATCAAAAAGTTCGTTGCTTTATCTCAATGAGCGCACTTTTGTCTTCGTCCTTGGCGC 665
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 566 GGCTTCAAAAAGTTCGTTGCTTTATCTCAATGAGCGTACTTTTGTTTTCGTCCTTGGCGC 625
Query 666 TTGTGCTAGGTCAGCTTCGTCGTCGGCGTTACGGGTTGGTAGAATTGTTCATGGGATGGT 725
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 626 TTGTGCTAGGTCAGCTTCGTCGTCGGCATTACGGGTTGGTAGAATTGTTCATGGGATGGT 685
Query 726 GAAAAAGCTTGGCTTTCTATATGAATCTGAATTGATTGGAACCACTTTACTCCATTTCTA 785
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 686 GAAAAAGCTTGGCTTTCTCTATGAATCTGAATTCATTGGAACCACTTTACTCCATTGCTA 745
Query 786 CGCTAAGAATGGAGATTTACGTTATGCAAGGAAGGTGTTTGACGAAATGCCTGAGAGAAC 845
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 746 CGCTAAGAATGGGGATTTACGTTATGCGAGGAAGGTGTTTGATGAAATGCCTGAGAGAAC 805
Query 846 CTCTGTTACATGGAACGCAATGATAGGTGGATATTGTTCACATAAGGATAAAGGCAATCA 905
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 806 CTCTGTTACATGGAACGCAATGATCGGTGGATATTGTTCACATAAGGATAAAGGGAATCA 865
Query 906 CAATGCGAGAAAGGCTATGGTTTTGTTTAGGAGATTCTCTTGCTGTGGTAGTGGAGTTAG 965
|||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 866 CAATGCAAGAAAGGCTATGATTTTGTTTCGTAGATTCTCTTGCTGTGGTAGTGGAGTTAG 925
Query 966 ACCTACTGATACAACCATGGTTTGTGTTCTTTCAGCCATTTCTCAGACGGGTTTGCTCGA 1025
||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||
Sbjct 926 ACCTACTGATACAACCATGGTTTGTATTCTTCCAGCCATTTCTCAGACGGGGTTGATCGA 985
Query 1026 AATTGGTTCTCTCGTTCATGGTTACATAGAAAAGCTCGGGTTCACACCCGAAGTTGATGT 1085
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 986 AATCGGTTCTCTCGTTCATGGTTACATAGAAAAGCTCGGGTTCACACCCGAAATTGATGT 1045
Query 1086 CTTTATCGGTACTGCACTTGTCGACATGTACTCAAAATGCGGCTGCTTGAACAACGCATT 1145
|||||| ||||||| |||||| | |||||||||||||||||||||||| || | || ||
Sbjct 1046 CTTTATTGGTACTGGACTTGTAGCCATGTACTCAAAATGCGGCTGCTTAAATAGTGCTTT 1105
Query 1146 CTCCGTGTTCGAGCTAATGAAAGTGAAAAATGTCTTTACATGGACTTCAATGGCAACGGG 1205
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1106 CTCAGTCTTCGAGCTAATGAAAGTGAAGAATGTCTTCACATGGACTTCAATGGCAACAGG 1165
Query 1206 GCTAGCTCTCAACGGTAGAGGAAACGAAACACCGAATCTTCTAAACCGAATGGCGGAATC 1265
|||||| ||| | || |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1166 GCTAGCACTCCATGGAAGAGGAAACGAAACACCGAATCTTTTAAATCGAATGGCGGAATC 1225
Query 1266 TGGGATCAAACCAAACGAAATAACTTTCACTAGCTTGCTTTCGGCTTATCGTCATATAGG 1325
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1226 TGGGATCAAACCAAACGAAGTAACTTTCACTAGCTTGCTTTCGGCCTATCGTCATATAGG 1285
Query 1326 TCTTGTTGAAGAAGGAATCGAGCTGTTCAAGAGCATGAAGACAAGATTTGGTGTCACACC 1385
||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| ||
Sbjct 1286 TCTTGTTCAAGAAGGAATCGAGCTCTTCAAAAGCATGAGGACAAGATTTGGTGTCACTCC 1345
Query 1386 GGTTAT-CGAACACTATGGTTGCATAGTAGATCTTCTTGG-TAAGGCAGGGCGGATACAA 1443
|||||| | ||||||| || ||||||||||||||| |||| ||| |||||||||||||||
Sbjct 1346 GGTTATTC-AACACTACGGATGCATAGTAGATCTT-TTGGGTAAAGCAGGGCGGATACAA 1403
Query 1444 GAGGCTTATCAGTTTATATTAGCTATGCCTATAAAGCCTGACGCTATCTTGTTAAGAAGC 1503
||||||||| ||||| ||||||||||||||||||| || ||| | ||||||||||||||
Sbjct 1404 GAGGCTTATGAGTTTGTATTAGCTATGCCTATAAAACCCGACACCATCTTGTTAAGAAGT 1463
Query 1504 CTCTGCAATGCCTGCAGCATTTATGGAGAGACTGTAATGGGTGAAGAGATCGGAAAGGCT 1563
||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1464 CTCTGTAATGCCTGCAGCATTTATGGAGAGACTGCAATGGGTGAAGAAATCGGAAAGGCT 1523
Query 1564 CTTCTCGAGATAGAACGAGAGGACGAGAAGCTTTCGGGTTCTGAGTGCGAAGATTATGTC 1623
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1524 CTTCTCGAGATAGAACGAGAGGAGGAGAAGCTTTCAGGTTCTGAGTGCGAAGATTATGTC 1583
Query 1624 GCTTTATCGAATGTGTTAGCTCATAAAGGGAAATGGGTAGAGGTAGAGAAGCTGAGGAAG 1683
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1584 GCTTTATCGAATGTGTTAGCTCATAAAGGGAAATGGATAGAGGTAGAGAAGCTGAGGAAC 1643
Query 1684 GAGATGAAAGAAAGAAGAATCAAAACAAGACCTGGTTACAGTTTTGTTTAACATAGCTTG 1743
|||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||
Sbjct 1644 GAGATGAAAGAAAGAAGAATAAAAACAAGACCAGGTTTCAGTTTTGTTTAAAATAGCTTG 1703
Query 1744 TTACAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGAAGACtctcttgtcttcttc 1803
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1704 TTACAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGTAGACTCTCATGTCTTCTTC 1763
Query 1804 ttcttcttTAAGCACATGCATTGGATTCATCACATCAAGATCTACACA--TA-GATTAAA 1860
||||||||||||||| || |||| ||| |||| ||||| ||||||||| || ||| |||
Sbjct 1764 TTCTTCTTTAAGCACTTGGATTGAATTGATCATATCAACATCTACACAAATAAGAT-AAA 1822
Query 1861 A-ATATTCAGATCCCAATCTTCTTAATCT-A---T-ATTAAGAACAAAGTCTTCTTACCG 1914
| |||||||||| ||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct 1823 AGATATTCAGATGCCAATCTTCTTAATCACAACGTTATTAAGACCAAAGTCTTCTTACCG 1882
Query 1915 TGTAGAATCTTGTCAAGTTCGATGTCTCTTGATCTCTTCTTGGATTTGTGCTCTGTATCA 1974
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1883 AGTAGAATCTTGTCAAACTCGATGTCTCTTGGTCTCTTCTTGGATTTGTGCTCTGTATCA 1942
Query 1975 CCACCATTAACAGATTGATTATTCTTCCTTGTACCTTGAGTTCC 2018
||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1943 CCACCATCAACAGATTGATCATTCTTCCTTGTACCTTGAGTTCC 1986
> Ahg318888 jgi|Araly1|318888|fgenesh1_pm.C_scaffold_3001904
Length=1572
Score = 69.4 bits (37), Expect = 9e-11
Identities = 60/71 (85%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 810 TGCAAGGAAGGTGTTTGACGAAATGCCTGAGAGAACC-TCTGTTACATGGAACGCAATGA 868
|||| | |||||||||||||||||||||||||||| | | | ||| |||||||| ||||
Sbjct 297 TGCACGTAAGGTGTTTGACGAAATGCCTGAGAGAAACGTA-GCTACTTGGAACGCTATGA 355
Query 869 TAGGTGGATAT 879
| ||||| |||
Sbjct 356 TTGGTGGGTAT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104309510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5