BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18980.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952175 jgi|Araly1|952175|scaffold_43900002.1 390 1e-107
Ahg933273 jgi|Araly1|933273|scaffold_401261.1 63.9 3e-09
> Ahg952175 jgi|Araly1|952175|scaffold_43900002.1
Length=1157
Score = 390 bits (211), Expect = 1e-107
Identities = 494/620 (80%), Gaps = 62/620 (10%)
Strand=Plus/Plus
Query 380 TATGCAACCACGTAGGCAAGAATCC-CCGATACGGATCTA-AAATCGTGGTTTGGAACCC 437
|||||| ||||| |||| || || ||| |||||||| | ||||||| |||||||||||
Sbjct 280 TATGCACCCACGAAGGC-AG---CCTCCGGTACGGATC-ACAAATCGTTGTTTGGAACCC 334
Query 438 GCTGACTGGTCAAACCAGGTGGATCGAAGCCGGCTATCGTTGGAAGGAATACGAAGTCAG 497
| | |||||||| ||||||||||||||| ||||| ||||||| |||||| | || |
Sbjct 335 GTTTACTGGTCAGACCAGGTGGATCGAATCCGGCAATCGTTGCAAGGAAGGC-AA--AAT 391
Query 498 ATTTGTTCTCGGATACTGCTACCAGCAAGACGAGAACAATTCCTGCAGTaaaaaaaTCTA 557
||||||||| ||||||| ||| | |||||| ||||||| ||||||||| |||| |||
Sbjct 392 ATTTGTTCTAGGATACTACTA-C--CAAGACAAGAACAAGTCCTGCAGT---AAAAGCTA 445
Query 558 CAAAATTTTGTGTTTTTA-TCCTAATGGCCAA-GATACAGAAATCTACGAGCTTAACTAC 615
|||| ||||||| || | |||| ||| ||| |||||||||||||||||| |||| ||
Sbjct 446 CAAAGTTTTGTG-CTTGAGTCCTTTTGG-CAATGATACAGAAATCTACGAG-TTAA--AC 500
Query 616 TCTGATAGGTGGACAAGGACGATTCCTGATGGTGATCTCACTCCAGGCTGGACCTTGAT- 674
|||||| |||| |||| |||||||||| | | || || | | || || || |
Sbjct 501 TCTGATTCGTGG---AGGAGGATTCCTGAT-G-G-TC-CAGGCTA--CT--ACATT--TC 547
Query 675 ATACTCAGAG-CAGACCGTGTCTATGAATGGAAAT-CTTTACTTGTTTGCTTCG-GAGAA 731
| |||| | | || | |||||| |||| |||||| | ||||| |||||| ||| ||||
Sbjct 548 AGACTCTG-GCCATATGGTGTCTTTGAAGGGAAATAC-TTACTGGTTTGC-TCGTGAGAT 604
Query 732 ATCAAAACCCCATCTTGGCGTGTCCTTGCTCAGATTTGATTTCTCA-ACAGAGAAATCAT 790
| ||||||| ||||| ||| | ||||||||| |||||||||| ||| |||||||||||||
Sbjct 605 AGCAAAACCGCATCTCGGCATATCCTTGCTCGGATTTGATTT-TCAGACAGAGAAATCAT 663
Query 791 C-TC--TATGTGTGACTCTTCCCTATCAGCGTCCAAGGTATGAAATTTTGAGTATTTCCG 847
| || | ||| || |||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 664 CATCTTTTTGTTTGCCTCTTCCCTATCAGGGTCCACTCTATGAAATTTTGAGTCTTTCCG 723
Query 848 CCGTTAGAGGAGGAGAGAATCTTTCTC-TGTTGT-TGCAGCTCGATTT-TGA-ATCTAAG 903
||||||| || |||||| ||||| | |||| | | || | || ||| | | ||| |||
Sbjct 724 TCGTTAGA-GA--AGAGAAACTTTC-CGTGTT-TATACAACCCG-TTTAT-ACATCCAAG 776
Query 904 ACTGAGATATGGGTGACGAATAAGATTGATGACACCACCACCAAAGGAGCAGCAGTCTCT 963
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 777 ACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGT--T-TCT 833
Query 964 TGGACCAAGGTCCTAGCATT 983
|||||||||||| || ||||
Sbjct 834 TGGACCAAGGTCTTATCATT 853
Score = 102 bits (55), Expect = 7e-21
Identities = 155/198 (78%), Gaps = 27/198 (14%)
Strand=Plus/Plus
Query 1128 CGACAAGATATACATTCTCGGGGAGGATAATAAAGTCGAT-GAAGT-AGGTTCTGGAGAG 1185
||||||||||||||||||||||||||||||||||||| || ||||| || || ||| | |
Sbjct 980 CGACAAGATATACATTCTCGGGGAGGATAATAAAGTC-ATTGAAGTGAGTTT-TGGTGTG 1037
Query 1186 GGAGAGGCTACAGATTCACTTGAAGGAAT-TTCGCAAGTTATTCTCAATTACGCTCCAAG 1244
|| | || | | | |||||| | || || || |||||| ||||| | ||||||
Sbjct 1038 GGT-A---TA-A----C--T-GAAGGA-TGTTGGCCAGCTATTCTTAATTATGTTCCAAG 1084
Query 1245 TTTGG-TCCAAATCGAGCAAGCCGGAGGAGGCAAAACAAAAAGAGGTGACGACTAAAACA 1303
||||| || | | |||| ||| || || | ||||| ||||||||||||| |||| ||
Sbjct 1085 TTTGGCTCGAGTT-GAGCCAGCTGG-GG-G-CAAAAGAAAAAGAGGTGAC---TAAA-CA 1136
Query 1304 ACCTCTACATGTAATATT 1321
||||||||||||||||||
Sbjct 1137 ACCTCTACATGTAATATT 1154
> Ahg933273 jgi|Araly1|933273|scaffold_401261.1
Length=934
Score = 63.9 bits (34), Expect = 3e-09
Identities = 72/89 (81%), Gaps = 8/89 (9%)
Strand=Plus/Plus
Query 856 GGAGGAGAGAATCTTTCTCTGTTGTTGCAGC-TCG-ATTTTGA-ATCTAAG-ACTGAGAT 911
|||| |||||| |||||| |||| || |||| | | | | | ||| ||| || |||||
Sbjct 573 GGAGAAGAGAAACTTTCTGTGTTATTACAGCAT-GCA-GAT-ACATC-AAGAACAGAGAT 628
Query 912 ATGGGTGACGAATAAGATTGATGACACCA 940
|||||||||||||||||||||||| ||||
Sbjct 629 ATGGGTGACGAATAAGATTGATGAGACCA 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5