BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18990.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479415 jgi|Araly1|479415|fgenesh2_kg.3__2116__AT3G18990.1 2204 0.0
Ahg923360 jgi|Araly1|923360|scaffold_104641.1 479 3e-134
> Ahg479415 jgi|Araly1|479415|fgenesh2_kg.3__2116__AT3G18990.1
Length=1465
Score = 2204 bits (1193), Expect = 0.0
Identities = 1407/1502 (94%), Gaps = 48/1502 (3%)
Strand=Plus/Plus
Query 7 TTTTTTCATCTTCTTGGGTTTGGTTGGGTCACTCTTCAGGTCAGGTGTGTaaaaaagaaa 66
||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1 TTTTTGCTTCTTCTTGGGTTTGGTTGGGTCACTCCTCAGGTCAGGTGTGTTAAAAAGAAA 60
Query 67 gaaagaaaagagagaTTGTTGTGTTGTAACCCCTTTGACTAAAATCT-AATGAACTTTTT 125
|||||||||||||| ||||||||||||||||||||||||||| || || | ||
Sbjct 61 AAAAGAAAAGAGAGA-----GTGTTGTAACCCCTTTGACTAAAATCTAAAAGAGC---TT 112
Query 126 TAACACAACAAAACTCCTTCAGATCTGAAAGGGTTCTTCTTCTCTCTTAGTCTCTTTGTC 185
|||||||| ||||||||||||||||||||||||||| || |||||| |||||| ||||
Sbjct 113 TAACACAATAAAACTCCTTCAGATCTGAAAGGGTTC-TC-TCTCTC--AGTCTC--TGTC 166
Query 186 CTTTTATTCTCCGTCGTCGTTTCATGATCTGACTCTCTGGtcttctcttcttcttcttct 245
||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 167 CTTTTATTCTCCGGCGTCGTTTCATGATCTGACTCTC---TCTGGTCTTC-TCTTCTTCT 222
Query 246 tcttctattttttcttacttcGTCACTGTTGTGTCTGAACATGCCACGCCCTTTCTTCCA 305
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TC--C---TTTTTCTTACTTCGTCACTGTTGTGTCTGAACATGCCACGCCCTTTCTTCCA 277
Query 306 TAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGT 365
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 278 TAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGAGTCCCAGATAAGTTTGT 337
Query 366 GAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGT 397
Query 426 TTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGA 457
Query 486 GTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAA 545
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 458 GTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATACGAAGGAAA 517
Query 546 CTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCAC 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCAC 577
Query 606 CGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGA 665
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CGGTCTCATGGATTCCGCACACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGA 637
Query 666 AGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTC 725
||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||
Sbjct 638 AGATGAAGATGCCGAGGTCGTCTTTCCTTCTTCCGTGTACCCTTCACCACTTCCTGATTC 697
Query 726 TACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACC 785
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 698 TACAGTACCAGCCAACAAAGGGTATGCTGGTTCAGCCATCCAAAGCTTGTTCACTGGATC 757
Query 786 AGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAA 845
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct 758 TGTTAAAGCTGAAGAGGCAACGCCAACTCCAAAAATTCCGAAAAAGAGAGGGAGGAAGAA 817
Query 846 GAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAA 905
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 818 GAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGGGATGATGACCCAGAGAA 877
Query 906 CCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAG 937
Query 966 AGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGT 1025
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 938 AGAGAGGGCCATCAATGCAGCGAAAACGTTCGAGCCAACAAACCCTTTCTTCAGAGTTGT 997
Query 1026 TCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGA 1057
Query 1086 GAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCC 1145
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1058 GAAGTACCTAAGTGGGATCTCCGGGTTCATCAAGGTCCAGCTCGCGGAGAAACAATGGCC 1117
Query 1146 TGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCAC 1205
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1118 TGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTTAGTCAAGGATGGTACGAATTCAC 1177
Query 1206 TCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCT-CAGAACCAGAG 1264
||||||||||||| ||||||||||||||||||| ||||| |||||||| | ||||| |||
Sbjct 1178 TCTAGAGAACAACCTAGGAGAAGGAGACGTCTGCGTGTTCGAGCTGCTAC-GAACCCGAG 1236
Query 1265 ATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGAACAAAGCATTATG 1324
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 ATTTCGTTCTGAAAGTGACGGCCTTTCGAGTCAACGAGTACGTCTGAACAAAGCATTATG 1296
Query 1325 GTGTGATCATTCTG--G-------ATTTGCAAGTACAATGTCGTGTAGGAGTATCTTAAT 1375
|||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1297 GTGTGATCATTCTGCAGTGGGGGGATTTGCAAGTACAATGTCGTGTAGGAGTATCTTAAT 1356
Query 1376 TTAAAAACAACTAAAAAACTCTCTTCTGGTCTGTGTCATTATTGCGTCAGTGTCTCGTTT 1435
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1357 TTAAAAACAACTAAAA--CTCTCTTCTGGTC------ATT---GCGTCAGTGTCTCGTTT 1405
Query 1436 TTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGTTGTTTTTACCTCATTATATA 1495
||||| ||||||||||| |||| ||||||||||||||||||||| ||| |||| ||||
Sbjct 1406 CTTCTC--GGGTTTACTTTATGTTTTCGATGTGGATAAGTTGTTTTCACCCCATTCTATA 1463
Query 1496 TA 1497
||
Sbjct 1464 TA 1465
> Ahg923360 jgi|Araly1|923360|scaffold_104641.1
Length=721
Score = 479 bits (259), Expect = 3e-134
Identities = 425/504 (84%), Gaps = 16/504 (3%)
Strand=Plus/Plus
Query 821 TACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAG 880
||| ||| |||||||| ||||||||||| ||| || |||| |||||| ||||||| |||
Sbjct 211 TACTTAAGAAGAGAGGAAGGAAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAA 270
Query 881 CTCCGCG-AGATGATGATC-CAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAG 938
||||| | || ||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 271 CTCCGGGTGGA-GATGA-CTCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCTAG 328
Query 939 AAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGA 998
||||||||| || || ||||| ||||||||| ||||| |||||||||||||||| |||||
Sbjct 329 AAAGAGAACTGTAACCGCAGAGGAAAGAGAGCGAGCCGTCAATGCAGCCAAAACATTCGA 388
Query 999 ACCAACAAACCCTTTCTT-CAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCA 1057
|||| | || |||| ||| | |||| |||||||||||||| |||||||||||||| ||||
Sbjct 389 ACCAGCCAATCCTTACTTTC-GAGTTGTTCTGCGACCATCATATCTATACAGAGGCTGCA 447
Query 1058 TCATGTATCTT-CCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATC 1116
||||||| ||| || |||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 448 TCATGTA-CTTGCCATCTGGGTTTGCTGAGAAGTACCTAAGCGGGATATCTGGTTTCATC 506
Query 1117 AAAG-TCCAGCTTGCG-GAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAG 1174
|| | ||||||| | | |||||||||||||| || | || ||||| ||||| |||||||
Sbjct 507 AA-GCTCCAGCTCG-GTGAGAAACAATGGCCAGTGAGGTGCCTCTATAAAGCAGGGAGAG 564
Query 1175 CCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACT-TAGGAGAAGGAGAC 1233
| || || || ||||||||||| || ||||| || |||||||| | |||| ||||||||
Sbjct 565 CTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAA-TATAGGCGAAGGAGAT 623
Query 1234 GTCTGTGTGTTTGAGCTGCTCAGAAC-CAGAGATTTCGTTTTGAAAGTGACAGCCTTTCG 1292
|| |||||||||||||| |||||||| | | |||||| || ||||||| || ||||||||
Sbjct 624 GTATGTGTGTTTGAGCTACTCAGAACTCGG-GATTTCATTCTGAAAGTCACCGCCTTTCG 682
Query 1293 AGTCAACGAGTACGTCTGAACAAA 1316
||||| || || || ||| ||||
Sbjct 683 TGTCAATGAATATGTGTGACCAAA 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5