BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19000.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1 1687 0.0
Ahg479418 jgi|Araly1|479418|fgenesh2_kg.3__2119__AT3G19010.1 289 4e-77
> Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1
Length=1191
Score = 1687 bits (913), Expect = 0.0
Identities = 1124/1221 (92%), Gaps = 33/1221 (3%)
Strand=Plus/Plus
Query 3 ATAAATTAGTATAGATTCATTTTATTTCAGGGAGAAATTAAATTCTACTCTACTTACGTG 62
|||||||||| ||||||||||||||||| |||| || |||| ||||||||| ||||||
Sbjct 1 ATAAATTAGTCTAGATTCATTTTATTTC-GGGA-CAAGAAAATACTACTCTACGTACGTG 58
Query 63 GCATTATCCTATAAAGCAACACCAACCGCACCACTAATCATCGATATCTCCAAAGCCTAC 122
| | ||||||||||| || |||||||||||||||| | ||| | | | | ||
Sbjct 59 GAACTATCCTATAAATCACCACCAACCGCACCACT-A--ATC---A--T-C---G-ATA- 104
Query 123 TCTAAAAAATAACCACAAGAATCACTGCCAAAACTGCCATGGGAGAACTCGACGAAGCTT 182
|| | ||| ||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 105 TC-------T--CCA-AAG-CCCACTGCAAAAACCGCCATGGGAGAACTCGACGAAGCTT 153
Query 183 TTATCCAAGCTCCAGAACACAGACCCAACACTCACCTCACAAACTCCGGTGATTTCATTT 242
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 154 TTATCCAAGCTCCAGAACACAGACCAAACACTCACCTCACAAACTCCAATGATTTCATTT 213
Query 243 TCTCCGACGAGATCCCGACCATCGACCTCTCTTCTCTCGA-AGATACTC-ATCATGACAA 300
|||||||||||||||||||||||| |||||||||||| | |||| | | ||||||||||
Sbjct 214 ACTCCGACGAGATCCCGACCATCGATCTCTCTTCTCTC-AGAGAT-CCCGATCATGACAA 271
Query 301 GACTGCGATCGCCAAGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTTCAAGTGAT 360
||| | |||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 272 GACGGTGATCGCGGCGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTCCAGGTGAT 331
Query 361 CAACCATGGCTTGCCTTCAGCTTTAAGGCATCGTGTAGAGAAGACA-GCTGCTGAGTTTT 419
|||||| ||||| ||||| | |||||||| |||||||||| || || | |||||||||||
Sbjct 332 CAACCACGGCTTACCTTCGGATTTAAGGCGTCGTGTAGAGGAGGCATG-TGCTGAGTTTT 390
Query 420 TCAATCTAACGACGGAGGAGAAGAGGAAAGTGAAAAGAGACGAAGTGAATCCTATGGGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TCAATCTAACGACGGAGGAGAAGAGGAAAGTGAAAAGAGACGAAGTGAATCCTATGGGTT 450
Query 480 ATCACGACGAAGAACACACTAAGAACGTTAGAGATTGGAAGGAAATTTTCGATTTCTTCT 539
|||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||
Sbjct 451 ATCACGACGAGGAACACACCAAGAACGTTAGAGACTGGAAAGAGATTTTTGATTTCTTCT 510
Query 540 TACAAGATTCCACGATCGTTCCGGCGTCACCGGAGCCGGAAGATACTGAGCTCCGAAAGC 599
| |||||||| ||||||||||||||| || |||| |||||||| ||||||||| ||||||
Sbjct 511 TGCAAGATTCGACGATCGTTCCGGCGACAACGGATCCGGAAGACACTGAGCTCAGAAAGC 570
Query 600 TCACGAACCAGTGGCCTCAAAACCCTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TCACGAACCAGTGGCCTCAAAACCCTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAA 630
Query 660 GAGAAGTTGAGAAGTTAGCTTTTAGGCTATTGGAACTTGTCTCCATTAGTTTGGGTCTAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GAGAAGTTGAGAAGTTAGCTTTTAGGCTATTGGAACTTGTCTCCATTAGTTTGGGTCTAC 690
Query 720 CTGGTGATCGGCTAACCGGTTTCTTCAATGAGCAAACTAGTTTTTTGCGGTTTAACCATT 779
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CTGGTGATCGGTTAACCGGGTTCTTCAATGAGCAAACTAGTTTTTTGCGGTTTAACCATT 750
Query 780 ACCCTCCTTGCCCGAACCCCGAGCTAGCATTAGGTGTTGGACGTCACAAAGATGGAGGAG 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 751 ACCCTCCTTGCCCGAACCCCGAGCTGGCATTAGGTGTTGGACGTCACAAAGATGGAGGAG 810
Query 840 CTTTAACCGTCCTGGCCCAAGATAGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATG 899
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CTTTAACCGTCTTGGCCCAAGATAGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATG 870
Query 900 GACAATGGATCCCCGTGAAACCGATCTCGGATGCTTTGATCATTAACATGGGCAATTGTA 959
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 871 GACAATGGATCCCCGTGAAACCGATCTCGGATGCTTTGATCATTAACATTGGCAATTGTA 930
Query 960 TTCAGGTGTGGACAAATGATGAGTATTGGAGTGCTGAACATAGAGTGGTCGTGAATACAA 1019
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 931 TTCAGGTGTGGACAAATGATAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAA 990
Query 1020 GCAAAGAGAGATTCTCAATACCATTCTTCTTCTTCCCATCACATGAAGCCAATATTGAGC 1079
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 991 GCAAAGAGAGATTCTCAATACCATTCTTCTTCTTCCCGTCACATGAAGCCAACATTGCGC 1050
Query 1080 CATTGGAGGAGCTTATAAGTGAGGAAAACCCGCCTTGTTATAAAAAGTACAATTGGGGAA 1139
|| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1051 CACTGGAAGAGCTTATAAGTGAAGAAAACCCGCCTTGTTACAAAAAGTACAATTGGGGAA 1110
Query 1140 AGTTCTTTGTTTCAAGAAACAGAAGTGATTTCAAGAAACTCGAGGTTGAGAATATCCAGA 1199
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1111 AGTTCTTTGTTTCAAGAAACAGAAGTGATTTCAAGAAGCTCGAGGTTGAGAATATCCAGA 1170
Query 1200 TTGATCACTTCAAGGCTTAGT 1220
|||||||||||||||||||||
Sbjct 1171 TTGATCACTTCAAGGCTTAGT 1191
> Ahg479418 jgi|Araly1|479418|fgenesh2_kg.3__2119__AT3G19010.1
Length=1175
Score = 289 bits (156), Expect = 4e-77
Identities = 671/910 (74%), Gaps = 74/910 (8%)
Strand=Plus/Plus
Query 340 ATGGGGATTTTTTCAAGTGATCAACCATGGCT-TGCCTT--CAGCTTTAAGGCATCGTGT 396
||||||||||||||| ||||| || ||||| | |||||| || | |||||| |||||
Sbjct 186 ATGGGGATTTTTTCAGGTGATTAATCATGG-TGTGCCTTCCCA-C-GCAAGGCAACGTGT 242
Query 397 AGAGAAGACAGCTGCTGA-GTTTTTCAATCTAACGACGGAGGAGAAGAGGAAA-GTGAAA 454
|||||||| | || || ||||||| || | | | ||| ||||||| ||| |||||
Sbjct 243 GGAGAAGACTG-TGAAGATGTTTTTCGATTTGCCAATGGAAGAGAAGA-TAAAGGTGAAG 300
Query 455 AGAGACGAAGTGAATCCTAT-GGGTTATCACGACGAAGAACACACTAAGAACGTTAGAGA 513
|||||||||||||||||| | ||| ||||| || | ||||||||| |||||||||| |||
Sbjct 301 AGAGACGAAGTGAATCCTGTAGGG-TATCATGATGGAGAACACACCAAGAACGTTAAAGA 359
Query 514 TTGGAAGGAAAT-TTTCGATTTCTTCTTAC-AAGATTCC-ACGATCGTTCCGGCGT-CAC 569
|||||| ||| | ||| ||| | || || | |||| ||| | | | |||| | | ||
Sbjct 360 TTGGAAAGAAGTGTTT-GATAT-TTATTTCAAAGA-TCCAATGGTTATTCCTTCTTCCA- 415
Query 570 CGGAGCCGGAAGATACTG-AGCTCCGAAAGC----TCACGAACCAGTGGCCTCAAAAC-C 623
| || || |||| | || || | || || | || ||| ||||||||| || | |
Sbjct 416 CTGATCCTGAAG--A-TGAAGGT-TTAAGGCTTGTTTAC-AACAAGTGGCCTC-AATCTC 469
Query 624 CTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAAGAGAAGTTGAGAAGTTAGCTTTTA 683
||||| ||||||| || | ||| ||| |||||||| | | | ||| || ||||| || |
Sbjct 470 CTTCTGATTTCAGGGAAGCATGTGAAGTATATGCAAAACACGCTGAAAAATTAGCGTTCA 529
Query 684 GGCTATTGGAACTTG-TCTCCATT-AG-TTTGGGTCTACCTGGTGATCGGCTAAC-CGGT 739
||| ||||||| || | | |||| || || || | |||| || | | | | | |
Sbjct 530 AGCTCTTGGAAC-TGAT-TTCATTAAGCTTAGGCT-TACCAAAAGAGC-GTTTTCATGAT 585
Query 740 TTCTTCAATGAGCAAACT-AGTTTTTTGC-GGTTTAACCATTACCCTCCTTGCCCGAA-C 796
| |||||| || |||| | |||||||| | || | || | ||| || || || || ||
Sbjct 586 TACTTCAAAGAACAAA-TGAGTTTTTT-CAGGATAAATCGTTATCCACCATGTCC-AAGA 642
Query 797 CCCGAGCTAGCATTAGGTGTTGGACGTCACAAAGATGGAGGAGCTTTAACCGTC--CTGG 854
|| || ||||| ||||||||||| | |||||||||| | || | ||| ||| |||
Sbjct 643 CCTGACCTAGCTTTAGGTGTTGGTCACCACAAAGATGCA-GA-CGTTATTAGTCTATTGG 700
Query 855 CCCAAGATAG-TGTAGGTGGATTACAAGTGAGTCGTAGATCGGATGGACAATGGATCCCC 913
| |||||| | || || |||||||||||||||||||||||||| || ||| | ||
Sbjct 701 CTCAAGAT-GAAGTTGGAGGATTACAAGTGAGTCGTAGATCGGACGGTGTTTGG-TTTCC 758
Query 914 G-TGA-AACCGATCTCGGATGCT-TTGATCATTAACATGGGCAATTGTATTCAGGTGTGG 970
| | | | ||| || | ||||| ||| |||| || || ||||| ||||| || | |||
Sbjct 759 GATTAGACCCG-TCCCTAATGCTCTTG-TCATCAATATAGGCAACTGTATGGAGATATGG 816
Query 971 ACAAATGATGAGTATTGGAGTGCTGAACATAGAGTGGTCGTGAATACAAGCAA-AGAGAG 1029
|| |||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct 817 ACGAATGATAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAA-CAAGAGAGAG 875
Query 1030 ATTCTCAATACCATTCTTCTTCTTCCCATCACATGAAGCCAATATTGA-GCCATTGGAGG 1088
|| |||||||||||||||||| || || ||||| || | | | ||| |||||| || |
Sbjct 876 ATACTCAATACCATTCTTCTTGTTGCCTTCACACGATGTGGA-AGTGAAGCCATTAGAAG 934
Query 1089 AGCTTATAAGTGAGGAAAACCCGCCTTGTTATAAAAAG--TACAATTGGGGAAAGTTCTT 1146
||||| | ||| |||||||| || | ||| |||| || || ||||| |||||||
Sbjct 935 AGCTTGTGAGTCCTGAAAACCCTCCAAG--ATACAAAGGCTATAAATGGGGCAAGTTCTA 992
Query 1147 TGTTTCA--AGAAACAGAAGTGATTT-CAAGAAA-CTCGAGGTTGAGAATATCCAGATTG 1202
|| || || |||||||||||||| | |||| || || | || || ||||| || |
Sbjct 993 CGT--CAGTAGGAACAGAAGTGATTTTC--GAAAGCTGGAAATCGAAAACATCCAAATCG 1048
Query 1203 ATCACTTCAA 1212
|| |||||||
Sbjct 1049 ATGACTTCAA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5