BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19010.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479418 jgi|Araly1|479418|fgenesh2_kg.3__2119__AT3G19010.1 1897 0.0
Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1 267 2e-70
> Ahg479418 jgi|Araly1|479418|fgenesh2_kg.3__2119__AT3G19010.1
Length=1175
Score = 1897 bits (1027), Expect = 0.0
Identities = 1128/1176 (96%), Gaps = 9/1176 (1%)
Strand=Plus/Plus
Query 56 AAACTCTTTTTACGT-CAAGCAATGGAGGATCTTGATCCAACCTACATCCAAGCACCAGA 114
||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACTCTTTCTACGTGTAA-CAATGGAGGATCTTGATCCAACCTACATCCAAGCACCAGA 59
Query 115 GCATAGATCAGATTCGAATTTCATCCCTAACCAACCAGAAGAAATACCCGTGATTGATCT 174
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 60 GCATAGATCAGATTCAAATTTCATCCCTAACCAACCCGAAGAAATACCCGTGATCGATCT 119
Query 175 CTCGCGCCTCGATGACCCCGAAGATGTCCAAAACGTTATCTCAGAGATCGGTGATGCTTG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCGCGCCTCGATGACCCCGAAGATGTCCAAAACGTTATCTCAGAGATCGGTGATGCTTG 179
Query 235 TGAAAAATGGGGATTTTTTCAGGTGCTTAATCATGGTGTGCCTTCTGACGCAAGGCAACG 294
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 180 TGAAAAATGGGGATTTTTTCAGGTGATTAATCATGGTGTGCCTTCCCACGCAAGGCAACG 239
Query 295 TGTGGAGAAGACTGTGAAGATGTTTTTCGATTTGCCTATGGAAGAGAAGATAAAGGTGAA 354
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TGTGGAGAAGACTGTGAAGATGTTTTTCGATTTGCCAATGGAAGAGAAGATAAAGGTGAA 299
Query 355 GAGAGACGATGTGAATCCTGTAGGGTATCATGATGGAGAACACACCAAGAACGTTAAAGA 414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGAGACGAAGTGAATCCTGTAGGGTATCATGATGGAGAACACACCAAGAACGTTAAAGA 359
Query 415 TTGGAAAGAAGTGTTTGATATTTATTTCAAAGATCCAATGGTCATTCCTTCAACCACTGA 474
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 360 TTGGAAAGAAGTGTTTGATATTTATTTCAAAGATCCAATGGTTATTCCTTCTTCCACTGA 419
Query 475 TCCTGAAGATGAAGGCTTAAGACTTGTTTACAACAAGTGGCCTCAATCTCCTTCTGATTT 534
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCTGAAGATGAAGGTTTAAGGCTTGTTTACAACAAGTGGCCTCAATCTCCTTCTGATTT 479
Query 535 CAGGGAAGCATGTGAAGTATATGCGAGACACGCTGAAAAATTAGCGTTCAAGCTCTTGGA 594
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 480 CAGGGAAGCATGTGAAGTATATGCAAAACACGCTGAAAAATTAGCGTTCAAGCTCTTGGA 539
Query 595 ACTGATTTCGTTAAGCTTAGGCTTGCCAAAAGAGCGTTTTCATGACTACTTCAAAGAACA 654
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 540 ACTGATTTCATTAAGCTTAGGCTTACCAAAAGAGCGTTTTCATGATTACTTCAAAGAACA 599
Query 655 AATGAGTTTTTTCAGGATAAATCGTTATCCACCATGTCCAAGACCTGACCTAGCTTTAGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGAGTTTTTTCAGGATAAATCGTTATCCACCATGTCCAAGACCTGACCTAGCTTTAGG 659
Query 715 TGTTGGTCACCACAAAGATGCCGACGTTATTAGTCTATTGGCTCAAGATGATGTTGGAGG 774
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TGTTGGTCACCACAAAGATGCAGACGTTATTAGTCTATTGGCTCAAGATGAAGTTGGAGG 719
Query 775 ATTACAAGTTAGTCGTAGATCGGACGGTGTTTGGTTTCCGATTAGACCCGTCCCTAATGC 834
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTACAAGTGAGTCGTAGATCGGACGGTGTTTGGTTTCCGATTAGACCCGTCCCTAATGC 779
Query 835 TCTTGTCATCAATATAGGCAATTGTATGGAGATATGGACGAATGACAAGTATTGGAGTGC 894
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TCTTGTCATCAATATAGGCAACTGTATGGAGATATGGACGAATGATAAGTATTGGAGTGC 839
Query 895 TGAACATAGAGTGGTGGTGAACACAACAAGAGAGAGATACTCGATACCATTCTTCTTGTT 954
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 TGAACATAGAGTGGTGGTGAACACAACAAGAGAGAGATACTCAATACCATTCTTCTTGTT 899
Query 955 GCCTTCACACGATGTGGAAGTGAAGCCATTAGAAGAACTTGTGAGTCCTGAAAACCCTCC 1014
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GCCTTCACACGATGTGGAAGTGAAGCCATTAGAAGAGCTTGTGAGTCCTGAAAACCCTCC 959
Query 1015 AAAATACAAAGGCTATAAATGGGGTAAGTTCTACGTCAGTAGGAATAGAAGCGATTTTCG 1074
|| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 960 AAGATACAAAGGCTATAAATGGGGCAAGTTCTACGTCAGTAGGAACAGAAGTGATTTTCG 1019
Query 1075 AAAACTGGAAATCGAAAACATCCAAATCGATGACTTCAAAGTTAAAACTTAATATACTAT 1134
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 AAAGCTGGAAATCGAAAACATCCAAATCGATGACTTCAAAGTTAAAACTTAATCTACTAT 1079
Query 1135 GTATCG---GCtttttttttGTTT----ACCAAGCTATGATATTAATCAAATAATGTGTG 1187
|||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1080 GTATCGATTGTTTTTTTTTTTTTTTTTGACCAAGCTATGATATTAATCAAATAATGTGTG 1139
Query 1188 TGGGACTTAATTTGTGTCGGAAAGAATAAATTTGAT 1223
||||||| ||||||||||||||| |||| |||||||
Sbjct 1140 TGGGACTGAATTTGTGTCGGAAACAATATATTTGAT 1175
> Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1
Length=1191
Score = 267 bits (144), Expect = 2e-70
Identities = 556/749 (74%), Gaps = 52/749 (7%)
Strand=Plus/Plus
Query 241 ATGGGGATTTTTTCAGGTGCTTAATCATGG-TGTGCCTTCTGACGCAAGGCAACGTGTGG 299
|||||||||||| |||||| | || || || | | ||||| || ||||| ||||| |
Sbjct 311 ATGGGGATTTTTCCAGGTGATCAACCACGGCT-TACCTTCGGATTTAAGGCGTCGTGTAG 369
Query 300 AGAAGAC-TGTGAAGATGTTTTTCGATTTGCCTATGGAAGAGAAGA-TAAAGGTGAAGAG 357
|| || | |||| || ||||||| || | | | ||| ||||||| ||| ||||| ||
Sbjct 370 AGGAGGCATGTGCTGA-GTTTTTCAATCTAACGACGGAGGAGAAGAGGAAA-GTGAAAAG 427
Query 358 AGACGATGTGAATCCTGTAGGG-TATCATGATGGA-GAACACACCAAGAACGTTAAAGAT 415
|||||| ||||||||| | ||| ||||| || || ||||||||||||||||||| |||
Sbjct 428 AGACGAAGTGAATCCTAT-GGGTTATCACGA-CGAGGAACACACCAAGAACGTTAGAGAC 485
Query 416 TGGAAAGAAG-TGTTTGATAT-TTATTTCAAAGATCCAATGGTCATTCCTTCAACCACTG 473
||||||| || | |||||| | || || | ||||| | | | || |||| | || || |
Sbjct 486 TGGAAAG-AGATTTTTGATTTCTTCTTGC-AAGATTCGACGATCGTTCCGGCGACAACGG 543
Query 474 ATCCTGAAG--A-TGAAGGCTTAAGACTTGTTTAC-AACAAGTGGCCTC-AATCTCCTTC 528
|||| |||| | || | || | ||| | | || ||| ||||||||| || | |||||
Sbjct 544 ATCCGGAAGACACTG-A-GC-TCAGA-AAGCTCACGAACCAGTGGCCTCAAAAC-CCTTC 598
Query 529 TGATTTCAGGGAAGCATGTGAAGTATATGCGAGACACGCTGAAAAATTAGCGTTCAAGCT 588
| ||||||| || | ||| ||| |||||| ||| | | ||| || ||||| || | |||
Sbjct 599 TCATTTCAGAGAGGTATGCCAAGAATATGCAAGAGAAGTTGAGAAGTTAGCTTTTAGGCT 658
Query 589 CTTGGAAC-TGAT-TTCGTTAAGCTTAGGCT-TGCCAAAAGAGC-GTTTTCATGACTACT 644
||||||| || | | | || || || || | | || || | ||| | | | ||
Sbjct 659 ATTGGAACTTG-TCTCCATT-AG-TTTGGGTCTACCTGGTGATCGGTTAAC-CGGGTTCT 714
Query 645 TCAAAGAACAAA-TGAGTTTTTT-CAGGATAAATCGTTATCCACCATGTCC-AAGACCTG 701
|||| || |||| | |||||||| | || | || | ||| || || || || || || |
Sbjct 715 TCAATGAGCAAACT-AGTTTTTTGC-GGTTTAACCATTACCCTCCTTGCCCGAA-CCCCG 771
Query 702 ACCTAGCTTTAGGTGTTGGTCACCACAAAGAT-GCCGACGTTATTAGTC-TATTGGCTCA 759
| || || ||||||||||| | ||||||||| | || | | ||| | | ||||| ||
Sbjct 772 AGCTGGCATTAGGTGTTGGACGTCACAAAGATGGAGGA-GCT-TTAACCGTCTTGGCCCA 829
Query 760 AGATGA-TGTTGGAGGATTACAAGTTAGTCGTAGATCGGACGGTGTTTGG-TTTCCGATT 817
|||| | ||| || ||||||||||| |||||||||||||| || ||| | ||| |
Sbjct 830 AGAT-AGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATGGACAATGGATCCCCG-TG 887
Query 818 AGACCCG-TCCCTAATGCTCTTG-TCATCAATATAGGCAATTGTATGGAGATATGGACGA 875
| | ||| || | ||||| ||| |||| || || ||||||||||| || | ||||| |
Sbjct 888 A-AACCGATCTCGGATGCT-TTGATCATTAACATTGGCAATTGTATTCAGGTGTGGACAA 945
Query 876 ATGACAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAA-CAAGAGAGAGATAC 934
|||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 946 ATGATAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAAGCAA-AGAGAGATTC 1004
Query 935 TCGATACCATTCTTCTTGTTGCCTTCACA 963
|| |||||||||||||| || || |||||
Sbjct 1005 TCAATACCATTCTTCTTCTTCCCGTCACA 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5