BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19025.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929790 jgi|Araly1|929790|scaffold_302247.1 484 4e-136
> Ahg929790 jgi|Araly1|929790|scaffold_302247.1
Length=903
Score = 484 bits (262), Expect = 4e-136
Identities = 377/427 (88%), Gaps = 29/427 (7%)
Strand=Plus/Plus
Query 78 GCAATAAAGTGAAAAGAAAAAATGGTGAGCAAAACAAATAGTTACTTAACCTCAATTCTT 137
|||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 GCAATAAAGTCAAAAGAAAAAATGGTGAGCAAAACAAACAAATACTTAACCTCAATTCTT 60
Query 138 GTTATATTGATCAGCCGATACTACCGTCCTATCTCCGCCACGCCACAACCCGCAACATGG 197
|| |||||||||||| ||||||||||||||||| | || | | | ||||||||||
Sbjct 61 GTGATATTGATCAGCTTATACTACCGTCCTATCT----C-CG-C-C-A--CGCAACATGG 110
Query 198 CCGGGCCCATTTTGTGATGGTTCATGGA----G-C-T-TGG-TT--T-TTGGTATAAACT 246
|||||||||||| ||| ||||||||||| | | | || || | ||||||||||||
Sbjct 111 CCGGGCCCATTTCGTGTTGGTTCATGGAGCCGGCCATGGGGCTTGGTGTTGGTATAAACT 170
Query 247 -ATACCATTCTTGAAATCTCAAGGCCATAACGTAACTGCGGTCAACTTAGCGGCATCCAG 305
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 171 CATACCAATCTTGAAATCTCAAGGCCATAACGTAACTGCGGTCAACTTAGCGGCGTCCGG 230
Query 306 AATCGATCAATAAC-GGCCTGAGACTCTACGGT-TGGTTGCGGAGTCTATTGGGCCCTTG 363
||||||| | || || ||||||||||||||| | |||||||||| |||||||||||||
Sbjct 231 GATCGATCTACGACAGG-CTGAGACTCTACGGTCT-GTTGCGGAGTATATTGGGCCCTTG 288
Query 364 ATGGGCCTAATGGAGAGTCTAGGTGAGGATGAGAAGGTGATTCTTC-TGGCACATAGTTT 422
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 289 ATGGGCCTAATGGAGAGTCTAGGTGAGGATGAGAAGGTGATTCT-CGTGGCACATAGTTT 347
Query 423 GAGTGGGGCTTGCTATTCCTAAGGCCATGGAGTTGTTCTACAAAAAGGTTCATATGGCTA 482
| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 348 GGGTGGG-CTTGCTATTTCTAAGGCCATGGAGATGTTCTACAAAAAGGTTCATATGGCTA 406
Query 483 TTTTCGT 489
|||||||
Sbjct 407 TTTTCGT 413
Score = 219 bits (118), Expect = 4e-56
Identities = 138/148 (93%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 491 ATTGGTGAAAGAGTTTCAGCACTGGATGATCAAGAACAACCCTCCTAACCACGTGGAGCA 550
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 735 ATTAGTGAAAGAGTTTCAGCTCTGGATGATCAAGAACAACCCTCCTAACCACGTGGAGCA 794
Query 551 TATCCAGAATTCTGATCATATGGTCACGATTTCAAGGCCGTTAGATCTTGGTGCCTGTAT 610
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
Sbjct 795 TATCCAGAATTCTGATCATATGGTCATGATTTCTAGGCCGCTAGATCTTGGTGCCTGTCT 854
Query 611 TTTTTCTTTGGCTAAGAAGTTTGCTTGA 638
|| |||| |||||||||||| ||||||
Sbjct 855 ATTGTCTTCGGCTAAGAAGTTCGCTTGA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5