BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G19030.1

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479421 jgi|Araly1|479421|fgenesh2_kg.3__2122__AT3G19030.1         676    0.0  


> Ahg479421 jgi|Araly1|479421|fgenesh2_kg.3__2122__AT3G19030.1
Length=454

 Score =  676 bits (366),  Expect = 0.0
 Identities = 426/454 (94%), Gaps = 8/454 (2%)
 Strand=Plus/Plus

Query  1    GACTCACAAAGACAAGAGTTCTCTAGACGCGgaaaacataga-aaga-aaaaaa-cctaa  57
            |||||||||||||||||||||||||||||||||||||||||| || | |||||| ||| |
Sbjct  1    GACTCACAAAGACAAGAGTTCTCTAGACGCGGAAAACATAGAGAAAACAAAAAACCCTCA  60

Query  58   aaagcgcaaaacacgaaacaagaagaaaagaaaaacA--TTT--CTCT-TCCTACGAATT  112
            |||||||||||||||||||||||||||||| ||||||  |||   ||| |||||||||||
Sbjct  61   AAAGCGCAAAACACGAAACAAGAAGAAAAGTAAAACATTTTTAGTTCTCTCCTACGAATT  120

Query  113  AAGCACAAACAACATGGTGTCTCAAAAGCTAGAGATTTGCATCGAATTGGTGAAAATTGC  172
            ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  AAGTACGTACAACATGGTGTCTCAAAAGCTAGAGATTTGCATCGAATTGGTGAAAATAGC  180

Query  173  TGTTGTTTTCGTCACCACCGTGGCTGAATCAGTAGAAGAAGCTTTCCGTAAGCCTCCACC  232
            ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  181  TGTTGTTTTCGTCGCCACCGTTGCTGAATCAATAGAAGAAGCTTTCCGTAAGCCTCCACC  240

Query  233  GTCTCTTCCAGCAGTTCACGGTGGTCGCCGGAATAATTACGCCGCCGTTCCCATTCCTCT  292
            ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCGCTTCCAACAGTTCACGGTGGTCGCCGGAATAATTACGCCGCCGTTCCCATTCCTCT  300

Query  293  TGTTGGATTCATGTGATGAGCTTCTTAGttttttatttttttttGGTTTTGGCCTCATTA  352
            ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct  301  TGTTGGATTCATGTGATGAGCTTTTTAGTTTTTTTTTTTTTTTTGGTTTTGGCCTCGTTA  360

Query  353  AAGTTAGTAGTTCCCGTGCCTTGTGGCGTTTTGGATATTGTTTATTTGTGTATAAAGTAT  412
            ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  361  AAGTTAGTAGTTCTCGTGCCTTGTGGCGTTTTGGATGTTGTTGATTTGTGTATAAAGTAT  420

Query  413  AACCAAAACATAATGAAGAGTTTACAGATGAATC  446
            |||||||| |||||||||||||||||||||||||
Sbjct  421  AACCAAAAGATAATGAAGAGTTTACAGATGAATC  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16101658558


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5